BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,755,880	0	G	A	20.4%	1213.1 / 285.8	550	intergenic (+502/‑279)	smpB/intA	tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase
Reads supporting (aligned to +/- strand): ref base G (132/304); new base A (10/102); total (143/407)
Fisher's exact test for biased strand distribution p-value = 9.68e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 556 total aligned reads displayed.

AAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCA  >  NC_000913/2755782‑2755978

aaaaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATg                                                                                                     <  1:612310/99‑1 (MQ=255)

aaaaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATg                                                                                                     <  2:1498020/99‑1 (MQ=255)

 aaaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGt                                                                                                    <  1:1180100/99‑1 (MQ=255)

   agagATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTaa                                                                                                  <  2:1985685/99‑1 (MQ=255)

     agaTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAg                                                                                                >  2:5271112/1‑99 (MQ=255)

      gaTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAga                                                                                               <  1:696819/99‑1 (MQ=255)

      gaTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAga                                                                                               <  1:2311744/99‑1 (MQ=255)

       aTCGCGTGGTAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgac                                                                                              >  2:5080525/1‑99 (MQ=255)

       aTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgac                                                                                              >  1:3948167/1‑99 (MQ=255)

          gcgTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAgactga                                                                                           <  1:3610430/99‑1 (MQ=255)

              ggAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTaa                                                                                       >  1:2929450/1‑99 (MQ=255)

              ggAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTaa                                                                                       >  2:4030313/1‑99 (MQ=255)

              ggAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTaa                                                                                       <  1:1001915/99‑1 (MQ=255)

                 aGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCa                                                                                    <  1:4985722/99‑1 (MQ=255)

                  gCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCAt                                                                                   >  2:1207230/1‑99 (MQ=255)

                   cccTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATg                                                                                  >  2:2373073/1‑99 (MQ=255)

                    cctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTCAGCATgt                                                                                 >  2:4096759/1‑99 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTAc                                                                            <  2:489282/99‑1 (MQ=255)

                           ggggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCg                                                                          >  2:2872588/1‑99 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:3485948/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:645477/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:3554483/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:5433529/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:5054002/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  2:1735764/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:3879857/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:4709727/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:86485/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:808534/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:1193073/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:1796032/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:1674016/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:266569/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:2612225/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:1869920/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:1601398/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:2079224/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:2287927/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:4680171/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:4624538/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:4308546/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:2140458/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:2448840/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:1236571/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:3284319/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                         <  1:5551135/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTCGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:5304471/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:2775518/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:1328282/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:74419/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:5112046/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:5142892/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:4817353/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:4505091/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:76817/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:1915041/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:945357/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:2414818/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:364658/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:2730220/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:2886384/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:3730163/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:1285166/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:5523547/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCCAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:5235448/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGGGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                        <  1:3345792/99‑1 (MQ=255)

                              gTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAga                                                                       >  2:686802/1‑98 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                      <  1:4592184/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                      <  1:440022/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                      <  1:5357942/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                      <  1:3843179/99‑1 (MQ=255)

                                   aGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTa                                                                  >  1:3760739/1‑99 (MQ=255)

                                    gCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAg                                                                 <  1:1422516/99‑1 (MQ=255)

                                    gCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAg                                                                 <  1:3998503/99‑1 (MQ=255)

                                       ttAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGaa                                                              >  2:649320/1‑99 (MQ=255)

                                           aaCTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTc                                                          <  2:2192265/99‑1 (MQ=255)

                                            aCTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCg                                                         <  1:407378/99‑1 (MQ=255)

                                            aCTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCg                                                         <  2:2679055/99‑1 (MQ=255)

                                             cTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCgg                                                        <  2:3163362/99‑1 (MQ=255)

                                              ttAATCAGGATAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGCCAAGCGAATGTCAAGACTGACTAAGCCTGTAGTACCGAGGATGTAGGAATTTCGGa                                                       <  1:4901334/99‑1 (MQ=255)

                                                  acAGCCTAGGTTTTGAGTGGCGTGTCCGTCCGCAGCGGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGAcgcg                                                   <  1:5635230/98‑1 (MQ=255)

                                                   cAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCgg                                                  <  1:546568/99‑1 (MQ=255)

                                                     ggCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑Gt                                               >  1:1267989/1‑99 (MQ=255)

                                                      gCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑Gtt                                              <  1:2562954/99‑1 (MQ=255)

                                                      gCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑Gtt                                              >  1:1460394/1‑99 (MQ=255)

                                                        tAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCa                                            >  2:3692936/1‑99 (MQ=255)

                                                          gTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAAc                                          >  2:463532/1‑99 (MQ=255)

                                                                  gTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGccc                                  >  2:4462947/1‑98 (MQ=255)

                                                                          tccgtccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTccacc                          >  1:1077419/1‑99 (MQ=255)

                                                                          tccgtccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTccacc                          >  2:1003083/1‑99 (MQ=255)

                                                                            cgtccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCaa                        >  1:3025054/1‑99 (MQ=255)

                                                                             gtccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCaaa                       >  1:3152747/1‑99 (MQ=255)

                                                                               ccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAAt                     <  1:2005047/99‑1 (MQ=255)

                                                                                 gCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAATtc                   >  2:2490401/1‑99 (MQ=255)

                                                                                 gCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGGAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAATtc                   >  2:3295372/1‑99 (MQ=255)

                                                                                  cAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAATtct                  <  1:4162421/99‑1 (MQ=255)

                                                                                     cTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAATTCTCCa               <  1:2533630/99‑1 (MQ=255)

                                                                                      tgccAAGCGAACGTCACGACTCACCCAGCATGTAGAACCGAGGATGAAGGTATTTCGG‑CTCGGCGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCAt              <  2:4842247/96‑1 (MQ=255)

                                                                                            gCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGa        <  1:424521/99‑1 (MQ=255)

                                                                                                  gTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCa  >  2:3609199/1‑99 (MQ=255)

AAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGG‑GTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCA  >  NC_000913/2755782‑2755978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`