BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,755,880	0	G	A	38.5%	478.8 / inf	557	intergenic (+502/‑279)	smpB/intA	tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase
Reads supporting (aligned to +/- strand): ref base G (93/247); new base A (20/193); total (116/441)
Fisher's exact test for biased strand distribution p-value = 1.45e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.76e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 563 total aligned reads displayed.

AAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCA  >  NC_000913/2755782‑2755978

aaaaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATg                                                                                                    >  1:307295/1‑99 (MQ=255)

 aaaGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGt                                                                                                   >  1:1112988/1‑99 (MQ=255)

    gagaTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTaaa                                                                                                <  2:2278565/99‑1 (MQ=255)

      gaTCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAga                                                                                              <  2:292704/99‑1 (MQ=255)

        tCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgact                                                                                            <  1:4028679/99‑1 (MQ=255)

        tCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAgact                                                                                            >  2:2050464/1‑99 (MQ=255)

          gcgTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgactga                                                                                          >  2:3736442/1‑99 (MQ=255)

          gcgTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgactga                                                                                          >  2:3022395/1‑99 (MQ=255)

          gcgTGGAAGCCCTGCCTGGGGTTAAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgactga                                                                                          <  2:512746/99‑1 (MQ=255)

            gTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAgactgact                                                                                        >  2:3257458/1‑99 (MQ=255)

                aaGCCCTCCCTGGGGTTCAAGCGTTAAAACTTGATCAGGCTAGTCTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGc                                                                                    <  1:3989129/99‑1 (MQ=255)

                  gCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCAt                                                                                  >  2:1575527/1‑99 (MQ=255)

                    cctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgt                                                                                >  2:3477415/1‑99 (MQ=255)

                     ctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgta                                                                               >  2:2181976/1‑99 (MQ=255)

                     ctgcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATgta                                                                               <  1:31780/99‑1 (MQ=255)

                       gcctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgtagt                                                                             <  1:1007298/99‑1 (MQ=255)

                        cctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATgtagta                                                                            <  1:3910332/99‑1 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTAc                                                                           <  1:670357/99‑1 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTAc                                                                           <  1:1085802/99‑1 (MQ=255)

                         ctgGGGTTGAAGCGTTAAAACTTAAGCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTAc                                                                           <  1:1944437/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTATTCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:419264/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCgg                                                                        <  1:602686/99‑2 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3139872/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:326341/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3355994/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3588608/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2581397/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2491897/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2452781/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2198270/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1223994/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1441604/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:146575/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1614247/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:205504/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  2:1497710/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  2:1250198/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:1058308/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:721740/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3705007/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:3850061/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:156217/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2957753/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:2754158/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:955809/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4313919/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:874559/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:488532/99‑1 (MQ=255)

                            gggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:761492/99‑1 (MQ=255)

                            gggTTGAAACGTGAAAACTTAATCATGTTCCTTTTTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGa                                                                        <  1:4343846/99‑1 (MQ=255)

                             ggatGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3266364/96‑1 (MQ=255)

                             ggTTGAAGTTTTAAAACGTGATCAGGTTAGTTTGTTAGTGGCGTGTCCGGCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1071095/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGGCTAAGCATGTAGTACCGAg                                                                       <  1:3395535/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2232146/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3821739/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3327745/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3220963/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:303528/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2271368/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:4100855/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:18730/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:61688/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:20226/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1376491/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:443029/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2515534/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1523520/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2658889/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2391861/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:426194/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1324322/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:2131665/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:1167984/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:993542/99‑1 (MQ=255)

                             ggTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCATGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAg                                                                       <  1:3783575/99‑1 (MQ=255)

                              gTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGTCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAATGACTGACTAAGCATGTAGTACCGAgg                                                                      <  1:1845617/99‑1 (MQ=255)

                              gTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAgg                                                                      >  2:1147907/1‑99 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:829128/99‑1 (MQ=255)

                               ttGAAGCGTTAAAACTTAATCAGGCTAGTTGTGTAGTGGCGTGGCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:4138978/99‑1 (MQ=255)

                               tcgAACCGTCAAAACCTAATCAGACTAGTTTGTTAGTGGCCTGTCCGTCCCCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGa                                                                     <  1:2164873/97‑1 (MQ=255)

                                tGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGAt                                                                    <  1:1769476/99‑1 (MQ=255)

                                  aaGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGt                                                                  >  2:78905/1‑99 (MQ=255)

                                   aGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTa                                                                 <  1:1676768/99‑1 (MQ=255)

                                   aGCGTTAAAAATTAATAAGGATAGTTTGTTAGTGGAGTGTCCGTACGTAGCTGGAAAGCGAATATAAAGAATGAATAAGCATGTAGTACCGAGGAtaga                                                                 >  2:4063446/1‑96 (MQ=255)

                                    gCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAg                                                                <  1:3489561/99‑1 (MQ=255)

                                    gCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATATAAAGACTGACTAAGCATGTAGTACCGAGGATGTAg                                                                <  1:565816/99‑1 (MQ=255)

                                          aaaCTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAAttt                                                          >  2:2541155/1‑99 (MQ=255)

                                             cTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCgg                                                       >  1:2362306/1‑99 (MQ=255)

                                                 aTCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGAcgc                                                   <  1:254176/99‑1 (MQ=255)

                                                   cAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCgg                                                 <  1:173965/99‑1 (MQ=255)

                                                           tttGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACt                                         >  2:1824148/1‑99 (MQ=255)

                                                           tttGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGGAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGGTCAACt                                         >  1:2705711/1‑99 (MQ=255)

                                                                    ggCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGc                                <  1:516217/99‑1 (MQ=255)

                                                                      cGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTc                              >  1:2880231/1‑99 (MQ=255)

                                                                        tgtCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTcca                            >  2:234679/1‑99 (MQ=255)

                                                                             gtccgCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGTGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCaaa                       >  2:4201041/1‑99 (MQ=255)

                                                                                            gCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGa        >  1:1272379/1‑99 (MQ=255)

                                                                                             cGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGAt       >  2:613090/1‑99 (MQ=255)

                                                                                                  gTAAAGACTGACTAAGCGTGTAGTACCGAGGATGTAGGAATTGCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCa  <  1:1975639/99‑1 (MQ=255)

                                                                                                  gTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCa  <  2:2791338/99‑1 (MQ=255)

AAAAGAGATCGCGTGGAAGCCCTGCCTGGGGTTGAAGCGTTAAAACTTAATCAGGCTAGTTTGTTAGTGGCGTGTCCGTCCGCAGCTGGCAAGCGAATGTAAAGACTGACTAAGCATGTAGTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCA  >  NC_000913/2755782‑2755978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`