Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,765,440 (TATGGCAC)6→3 intergenic (‑287/+50) yfjL ← / ← yfjM CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2765412 2765435 24 276 [0] [0] 277 yfjL/yfjM CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2765436 =0 (0.000)210 (1.450) 103/308 0.0 100% intergenic (‑283/+77) yfjL/yfjM CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein
?NC_000913 = 2765411 0 (0.000)intergenic (‑258/+102) yfjL/yfjM CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein

Only 100 of 277 total aligned reads displayed.

GTCCAATCGGATCACTGCATCATCACCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGAC  >  NC_000913/2765203‑2765674
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                              
aaattaaggagatgttatgacacattccaatcggatcactgcgtcatcaccagtaatttaaataattcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcacta                                                                                                                                                                                                                                           >  2:345335‑M1/234‑239 (MQ=255)
   ttaaggagatgttatgacacagtccaatcggatcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgg                                                                                                                                                                                                                                        >  2:1042316‑M1/231‑239 (MQ=255)
   ttaaggagatgttatgacacagtccaatcggatcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgg                                                                                                                                                                                                                                        >  1:1243612‑M1/231‑239 (MQ=255)
               tatgacacagtccaatcggatcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcacta                                                                                                                                                                                                                                           >  1:1941351‑M1/219‑224 (MQ=255)
                         tccaatcggatcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccg                                                                                                                                                                                                                                                <  2:1367879‑M1/1‑1 (MQ=255)
                         tccaatcggatcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccg                                                                                                                                                                                                                                                >  1:1367879‑M1/209‑209 (MQ=255)
                         tccaatcggatcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCg                                                                                                                                                                                                                   <  1:1145267‑M1/30‑1 (MQ=255)
                                   tcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgccggtatcaatcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGt                                                                                                                                                                                                        <  2:1678784‑M1/41‑1 (MQ=255)
                                   tcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgg                                                                                                                                                                                                                                        <  2:525804‑M1/9‑1 (MQ=255)
                                   tcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgca                                                                                                                                                                                                                                              <  2:1721441‑M1/3‑1 (MQ=255)
                                   tcactgcatcatcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgca                                                                                                                                                                                                                                              >  1:1721441‑M1/199‑201 (MQ=255)
                                          ataatcacaagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacttctaatttggttatataacatactgccccaactaacgtaagttaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTTTGGCACTATGGCACCGCCAGCGATTGTAATcaca                                                                                                                                                                                                 >  2:1232310‑M1/192‑239 (MQ=255)
                                            catcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACt                                                                                                                                                                                               >  1:10621‑M1/190‑239 (MQ=255)
                                               caccagtgatctaaattcttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGa                                                                                                                                                                                            >  2:1790046‑M1/187‑239 (MQ=255)
                                                    ttgatctaattcttccacagccatttctggccgaagttatcaagctttccagtatcccacaaattttttaaccctaacgtctaatttgtttataatacttactgcccaaactaacgtaaggtaggcccagccttaatcaaggttttggttttcaaatagttcagagctgaaaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGAtatta                                                                                                                                                                                       >  2:2115773‑M1/182‑239 (MQ=255)
                                                      gatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATtata                                                                                                                                                                                     <  1:941729‑M1/60‑1 (MQ=255)
                                                          taaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACt                                                                                                                                                                                               >  2:639952‑M1/176‑225 (MQ=255)
                                                             atacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAAcaca                                                                                                                                                                              >  1:1656172‑M1/173‑239 (MQ=255)
                                                               acttcacagccattctcggtcgcaggtatcaagcttttcaggatttcacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGt                                                                                                                                                                            <  2:197698‑M1/69‑1 (MQ=255)
                                                                   cacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGc                                                                                                                                                                         <  2:860257‑M1/72‑1 (MQ=255)
                                                                   cacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGc                                                                                                                                                                         <  2:2251537‑M1/72‑1 (MQ=255)
                                                                   cacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGc                                                                                                                                                                         <  2:1207853‑M1/72‑1 (MQ=255)
                                                                   cacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCa                                                                                                                                                                        >  1:1534668‑M1/167‑239 (MQ=255)
                                                                      agccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGc                                                                                                                                                                     <  1:2233013‑M1/76‑1 (MQ=255)
                                                                        ccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatggca                                                                                                                                                                                                                                      >  2:484016‑M1/162‑172 (MQ=255)
                                                                         cattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCatt                                                                                                                                                                  >  1:2061168‑M1/161‑239 (MQ=255)
                                                                           ttctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctggcgtctaatttggttatataacatactgccccaactaacgtaaggtaggcaccgccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCattat                                                                                                                                                                <  2:737540‑M1/81‑1 (MQ=255)
                                                                                  tcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATtata                                                                                                                                                                                     <  1:1090087‑M1/60‑1 (MQ=255)
                                                                                  tcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATtata                                                                                                                                                                                     >  2:1090087‑M1/152‑211 (MQ=255)
                                                                                                        gattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGAt                                                                                                                                    <  1:243545‑M1/109‑1 (MQ=255)
                                                                                                          ttccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCAC‑‑‑‑‑‑‑‑CGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGc                                                                                                                         >  1:149685‑M1/128‑239 (MQ=255)
                                                                                                             caaaaatattgtacaccgaacgtctaatttggttatataacagaatgccccaactaacgaaaggaaggcacagccttaaacaagtttttggtttgaaaagagttcagagctgagaccgacaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGc                                                                                                                                                                                                              >  2:566215‑M1/125‑159 (MQ=255)
                                                                                                                  atattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGc                                                                                                                         >  1:1441848‑M1/120‑239 (MQ=255)
                                                                                                                  atattgtaaccctgacgtctaatttggttatataacatactgcccaaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGc                                                                                                                         >  1:441201‑M1/120‑239 (MQ=255)
                                                                                                                       gtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGc                                                                                                                         <  1:381567‑M1/120‑1 (MQ=255)
                                                                                                                        taaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATg                                                                                                                                   <  2:1126237‑M1/110‑1 (MQ=255)
                                                                                                                          accctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCAAGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCa                                                                                                                  <  2:2095667‑M1/127‑1 (MQ=255)
                                                                                                                              tgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATc                                                                                                             <  2:2239788‑M1/132‑1 (MQ=255)
                                                                                                                               gacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATc                                                                                                             <  2:2220029‑M1/132‑1 (MQ=255)
                                                                                                                                 cgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATcgc                                                                                                           >  1:716330‑M1/105‑238 (MQ=255)
                                                                                                                                  gtctaattgggttatataaaatactgcccaaacaaccgtaaggtaggcacagccttaaccaatgtttaggttttgaaatagtgcagacctgggaccgcaatccACACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGc                                                                                                                         >  2:1411404‑M1/104‑223 (MQ=255)
                                                                                                                                         ttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATg                                                                                                  >  1:860257‑M1/97‑239 (MQ=255)
                                                                                                                                             ttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgc                                                                                                                                                                                                                                               <  1:1158312‑M1/2‑1 (MQ=255)
                                                                                                                                             ttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCt                                                                                               >  1:1836375‑M1/93‑238 (MQ=255)
                                                                                                                                                tataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATg                                                                                                  <  2:514382‑M1/143‑1 (MQ=255)
                                                                                                                                                 ataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgca                                                                                                                                                                                                                                              >  2:1169941‑M1/89‑91 (MQ=255)
                                                                                                                                                 ataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCAc                                                                                                                                                                       <  2:1070857‑M1/74‑1 (MQ=255)
                                                                                                                                                   actatacggcccaaacaaacgtaagtaaggcacagcttaaatcaaggttttggttttcaaatgtttatgagcggagaccgcaaaccGCTTTATGACATAAGGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCTCGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCtata                                                                                        >  2:1617498‑M1/87‑239 (MQ=255)
                                                                                                                                                      atactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACt                                                                                                                                                                                               <  1:500198‑M1/50‑1 (MQ=255)
                                                                                                                                                       tactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccg                                                                                                                                                                                                                                                >  2:1485653‑M1/83‑83 (MQ=255)
                                                                                                                                                        actgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATAttgtt                                                                                   <  1:2004737‑M1/158‑1 (MQ=255)
                                                                                                                                                          tgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgca                                                                                                                                                                                                                                              <  2:1872932‑M1/3‑1 (MQ=255)
                                                                                                                                                          tgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTAAGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGAt                                                                                                                                    <  1:2095130‑M1/109‑1 (MQ=255)
                                                                                                                                                           gccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccg                                                                                                                                                                                                                                                >  1:750559‑M1/79‑79 (MQ=255)
                                                                                                                                                            ccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccg                                                                                                                                                                                                                                                <  1:1338645‑M1/1‑1 (MQ=255)
                                                                                                                                                            ccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATtata                                                                                                                                                                                     >  1:1001871‑M1/78‑137 (MQ=255)
                                                                                                                                                            ccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATtata                                                                                                                                                                                     <  2:1001871‑M1/60‑1 (MQ=255)
                                                                                                                                                            ccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGAt                                                                                <  1:533065‑M1/161‑1 (MQ=255)
                                                                                                                                                            ccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGAt                                                                                <  2:364994‑M1/161‑1 (MQ=255)
                                                                                                                                                            ccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTACTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGTGCAATGTTAACATCGCGTGCTCATGGCTTTCTATATTGTTGAt                                                                                <  2:1921514‑M1/161‑1 (MQ=255)
                                                                                                                                                             cccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCtata                                                                                        >  2:243545‑M1/77‑229 (MQ=255)
                                                                                                                                                             cccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCtata                                                                                        >  1:643449‑M1/77‑229 (MQ=255)
                                                                                                                                                                 actaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccg                                                                                                                                                                                                                                                >  2:399689‑M1/73‑73 (MQ=255)
                                                                                                                                                                 actaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccg                                                                                                                                                                                                                                                <  1:399689‑M1/1‑1 (MQ=255)
                                                                                                                                                                      cgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAAt                                                                                                                                                                                                     >  1:520673‑M1/68‑111 (MQ=255)
                                                                                                                                                                      cgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATcaca                                                                                                                                                                                                 <  2:2123261‑M1/48‑1 (MQ=255)
                                                                                                                                                                       gtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATc                                                                    >  2:1690450‑M1/67‑239 (MQ=255)
                                                                                                                                                                           ggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcacta                                                                                                                                                                                                                                           <  2:2190460‑M1/6‑1 (MQ=255)
                                                                                                                                                                           ggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcacta                                                                                                                                                                                                                                           >  1:2190460‑M1/63‑68 (MQ=255)
                                                                                                                                                                           ggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAggg                                                                                                                                                <  1:319402‑M1/97‑1 (MQ=255)
                                                                                                                                                                                 cacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCa                                                           >  1:2220029‑M1/57‑238 (MQ=255)
                                                                                                                                                                                    agccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgg                                                                                                                                                                                                                                        <  2:29868‑M1/9‑1 (MQ=255)
                                                                                                                                                                                    agccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgg                                                                                                                                                                                                                                        >  1:29868‑M1/54‑62 (MQ=255)
                                                                                                                                                                                     gccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACCCCt                                                      <  1:1881949‑M1/187‑1 (MQ=255)
                                                                                                                                                                                      ccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATcaca                                                                                                                                                                                                 <  2:937375‑M1/48‑1 (MQ=255)
                                                                                                                                                                                       cttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCa                                                           >  1:1204918‑M1/51‑232 (MQ=255)
                                                                                                                                                                                       cttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCa                                                           >  2:682250‑M1/51‑232 (MQ=255)
                                                                                                                                                                                       cttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCa                                                           >  1:1858435‑M1/51‑232 (MQ=255)
                                                                                                                                                                                       cttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACt                                                         >  2:1337320‑M1/51‑234 (MQ=255)
                                                                                                                                                                                           atcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCtata                                                                                        <  2:1154575‑M1/153‑1 (MQ=255)
                                                                                                                                                                                           atcaaggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTtata                                                  <  1:761632‑M1/191‑1 (MQ=255)
                                                                                                                                                                                            ccaagtttttgtttttaaaatagttaagagccgggaccgcaaaccGCACTATGGCACTATGCCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCt                                               >  2:2061478‑M1/46‑239 (MQ=255)
                                                                                                                                                                                                ggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAaca                                                                                                                                                                                >  1:1295636‑M1/42‑106 (MQ=255)
                                                                                                                                                                                                ggttttggttttcaaatagttcagagctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCtcatc                                           <  1:470927‑M1/198‑1 (MQ=255)
                                                                                                                                                                                                  ttttggttttcaaatagttcagagctgagaccgccaaccgcacta                                                                                                                                                                                                                                           <  2:1840923‑M1/6‑1 (MQ=255)
                                                                                                                                                                                                     tggttttcaaatagttcagagctgagaccgccaaccgcactatgg                                                                                                                                                                                                                                        >  2:916303‑M1/37‑45 (MQ=255)
                                                                                                                                                                                                     tggttttcaaatagttcagagctgagaccgccaaccgcactatgg                                                                                                                                                                                                                                        <  1:916303‑M1/9‑1 (MQ=255)
                                                                                                                                                                                                                   ttcagagctgagaccaccaaccGCACTATGGCACTATGCCTCTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCa                                                                                                    >  2:1526797‑M1/23‑163 (MQ=255)
                                                                                                                                                                                                                         gctgagaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGctc                      >  1:628648‑M1/17‑235 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGAtatta                                                                                                                                                                                       >  2:1879827‑M1/13‑70 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATcg                                                                                                            <  1:1874667‑M1/133‑1 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCt                                                                                               <  1:1691796‑M1/146‑1 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGcc                                                                        <  2:1822878‑M1/169‑1 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGcc                                                                        >  1:1822878‑M1/13‑181 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCg                                                                  <  1:797829‑M1/175‑1 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCg                                                                  >  2:797829‑M1/13‑187 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATTGCTTGTTTTGTGCTCTCTGCTCg              <  2:1341730‑M1/227‑1 (MQ=255)
                                                                                                                                                                                                                             agaccgccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGCTCTCTGCTCg              <  2:1052124‑M1/227‑1 (MQ=255)
                                                                                                                                                                                                                                  gccaaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGCTCTCTGCTCGt             <  2:1632996‑M1/228‑1 (MQ=255)
                                                                                                                                                                                                                                    caaccGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGCTCTCTGCTCGTTc           >  1:1620115‑M1/6‑235 (MQ=255)
                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                              
GTCCAATCGGATCACTGCATCATCACCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGCTCTCTGCTCGTTCTGTTTCGAC  >  NC_000913/2765203‑2765674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: