| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,483,268 | 0 | T | A | 33.9% | 120.0 / 26.4 | 65 | L24F (TTA→TTT) | emrK | multidrug resistance efflux pump membrane fusion protein |
| Reads supporting (aligned to +/- strand): ref base T (35/8); new base A (0/22); total (35/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.82e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGC > NC_000913/2483054‑2483499 | tATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAg > 2:1914784/1‑239 (MQ=255) tGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTAttt > 1:872772/1‑237 (MQ=255) gCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTttct > 1:1177689/1‑239 (MQ=255) ttggTGGCATCATTTTTTCCAAGTGAAACAAAAATCTCCCCTGGTCGAATTTAGTTCTTATTTTTATGATAAACGACAGTGACACTACCTGAGACTTGTAAAAAAATTGG‑ACCTCCATCCCCCGG‑AACAGAGGCGTAATCTGTAAAATTCATGTCTGATATTTCCATTAACCAAGAGAAATAGCCTCCGGAAAA‑CCAAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTttcttc < 2:181504/235‑1 (MQ=255) tCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCAAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAg > 2:1384623/1‑235 (MQ=255) aaaaCAAAATTGTCCCTTTTTCAAACGTTGTTCGTATTTTTATAATTAACGACAGTCACCCACCCTGAGTTTTGTGAAAAAATTGT‑TTCTGCATCCCCCGT‑AACATAGGCTTCATTTTTACAAATCATGTTTTCTATTCCCATTGACAAAAAGAAATAGGCCCCTAAAAA‑CGAAAAAAAAAAAA‑TTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGaa < 2:48923/236‑1 (MQ=255) tttGTCGAATGTAGTCTTTATTTTTATGATTAACGACAGTGCCCCTCCCTGAGATTTGGAAAAAAATTGG‑ATCTGCTTCCCCCGT‑AACATAGGCGTCTTTTTTACTAATAATTTTTTCTAATTCCATTGACCAAAAGGAATAGGCCCCAAAAAA‑CGAAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTAt < 2:2062645/215‑1 (MQ=255) tCGAACGTATTTCGTATTTTTATGATTAACGACAGTGACACTACCTGAGTTTTGTGAAAAAATTGG‑ATCTGCTTCCCCCGT‑GACAGAGGCTTCATCTGTACTAATTATTTCTTTAAATTCCATTGCCAAATAGACATAGCCACCTAAAAA‑CGAAATAAATAAAC‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAAt < 2:453860/222‑1 (MQ=255) cGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCAt > 1:1109706/1‑239 (MQ=255) gTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAAt > 1:2062645/1‑216 (MQ=255) ttCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACt > 1:453860/1‑222 (MQ=255) ctgtttttttATGATTAACGACAGTGCCACTCCCTGAGTTTTGTGAAAAATTTGG‑TTCTCCTTTCCCCGT‑GACATAGGCGTATTCTTTACTAATAATGTTTTCTAATCCCATTGCCAAATAGGAATAGCCACCTAAAAA‑CGAAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCa < 2:2171881/232‑1 (MQ=255) aTCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGa > 2:1458339/1‑239 (MQ=255) ttATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCACCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGaa > 2:714727/1‑239 (MQ=255) aaCGACAGTGACACTCCCTGAGATTTGTGCAAAAATTGG‑ATCTGCTTCCCCCGT‑GACATGGGCGTCATCTGTACAAATCATTTCTTAAAATCCAATTGCCAAATAGGAATAGGCCCTTAAAAA‑CAAAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGa < 2:1833011/174‑1 (MQ=255) aaCGACAGTGACACTACCGGATATTTGTGAAAAAATTGG‑TTCTCCTTTCCCCAT‑AAAAAAGGCGTCATCTGTACTAATCATTTTTTCTAATTCCATTGACCAATAGGCATAGCCACCTAAAAC‑CAAAAAAAATAAAA‑CTCCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTc < 2:616738/201‑1 (MQ=255) cacacTCCCAGAGATTGGTGCA‑AAATTGGTATTTGCATCCCCCGT‑AACAAGGGCGTCTTCTGTTATAATATTGTCTTCAAATCCCATTGACAAAGAGAAAAAGACCCCTAAAAA‑CGAAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTAtgaattga < 2:817274/234‑1 (MQ=255) acacTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTa > 1:1833011/1‑174 (MQ=255) acacTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTAtc > 1:616738/1‑201 (MQ=255) ccTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGc > 1:219413/1‑239 (MQ=255) agaCTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGcattc > 1:960610/1‑239 (MQ=255) tgCAAAAATTGG‑ATCTGC‑TTCCCCGTGGACATGGGCTTGATTTTTTCTAATCATTTCTTCTAGTCCCGTTGACCAATAGACAGAGGCCCCTGAAAA‑CGTAATAAAAAAAC‑TTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttcttc < 2:894860/239‑1 (MQ=255) ttGG‑CTATGTATTCCCTGG‑GCCAAGGGCGTCTTTTGTATTAATTATGTCTTGTATTCCAAATGCCCAGTGGGAACGGGCATAT‑AAAT‑CAGAATAAAAAAAATCCCCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCACATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCaag < 2:872772/239‑2 (MQ=255) gg‑ATCGGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATTTTTTCAAATTCAATGGACAAATAGGCATAGGCCCCTGAAAA‑CGAAATAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 1:1540745/239‑1 (MQ=255) gattctccttcccccGA‑GACATGGGCTTCATTTTTACAAATATTGTTTTCTAATTCAATGCACCAATAGGAATAGGCACATAAAAC‑CAAAAAAAATAAAT‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca < 2:960610/228‑1 (MQ=255) aTCTCCATTCCCCGT‑GACATAGGCGTCATCTGTCCTAAATATTTATTCAAATCCCTTGGCCAAATAGCAATAGGCCCTTAAAAC‑CATAATAAAAAAAA‑CTCCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGaa < 2:1671921/151‑1 (MQ=255) tGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGt > 1:1360016/1‑238 (MQ=255) cccGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGtt > 1:1671921/1‑151 (MQ=255) ccagT‑GACATAGGCGTTTTTTTTAATAATCATGTTTTATAATTCCATTAACAAAAAGGAAAAGACCCCT‑AAAA‑CCCAAAAAAAAAAACCTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttcttc < 2:27920/214‑1 (MQ=255) cGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCACCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTg < 1:714727/239‑1 (MQ=255) aGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca > 1:27920/1‑217 (MQ=255) aGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTa > 1:2216423/1‑238 (MQ=255) aGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTa > 1:1487895/1‑238 (MQ=255) aTCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAag < 1:821475/186‑1 (MQ=255) aTCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAag > 2:821475/1‑186 (MQ=255) tGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTAtctct > 1:961498/1‑145 (MQ=255) taaaaataatGTTTTCTATTCCCATTGACAAATAGGAATAGGCCCCTAAAAA‑CGAAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttcttc < 2:1239776/191‑1 (MQ=255) tACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCaataaata > 1:1572355/1‑63 (MQ=255) tACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCaataaata < 2:1572355/63‑1 (MQ=255) aTCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAg > 2:1983648/1‑238 (MQ=255) aTCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAg > 1:330882/1‑238 (MQ=255) tcgagTCTACTAATCCCATGGACCAATAGAAAGAGGCACGTAAAAA‑CCAAATAAAAAAAC‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGc < 1:634497/235‑1 (MQ=255) cATTTCTTTTAATCCCATTGACCAATAGGAATGGCCACTTGAAAA‑CACAAAAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGcc < 1:172151/239‑1 (MQ=255) tttttttatatttCAATTGACCAATGAGCATAGGCACCTAAAAA‑CTAAATAAATAAAA‑TTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCt < 2:968164/228‑1 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca > 1:1239776/1‑195 (MQ=255) gTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTaa > 1:21806/1‑239 (MQ=255) tcttaaaaTTCCATTGACCAATAGGAATGGGCACGTAAAAA‑CCAAAAAAAAAAAC‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGcc < 1:1384623/229‑1 (MQ=255) ttctAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAAttt > 1:1822478/1‑239 (MQ=255) ttctAATTCCATTACCAAATAGGCATAGGCACCTAAAAA‑CAAAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCAc < 2:2043758/120‑1 (MQ=255) cATTGACAAATAGAAATAGGCCCATAAAAA‑CGCAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttct < 2:29236/171‑1 (MQ=255) aTTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTAtctct > 1:2043758/1‑120 (MQ=255) aaaTAGGCATAGGCACCGGAAAA‑CACAATAAAAAAAA‑TTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCAttcttc < 2:1696728/165‑1 (MQ=255) taggcataggcaCCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCaaa > 1:29236/1‑171 (MQ=255) ataggcaCCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTttc > 1:904803/1‑56 (MQ=255) ataggcaCCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAacaaca > 1:350103/1‑239 (MQ=255) atagccaCCTAAAAA‑CAAAAAAAAAAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAacaaca < 2:1487895/239‑1 (MQ=255) aatacacccTGAAAACCGAAATAAAAAAAC‑ATACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAaacaa < 2:728991/231‑1 (MQ=255) aggcaCCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTa > 1:902784/1‑74 (MQ=255) aggcaCCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca > 1:760695/1‑166 (MQ=255) aggcaCCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAaca > 1:1696728/1‑166 (MQ=255) tgcaCATAAAAA‑CGAAAAAAAAAAAA‑CTTCCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACagag < 2:350103/238‑1 (MQ=255) ggcaCCAAAAAG‑CGCAAAAAATAAAA‑CAACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAAt < 1:635440/84‑1 (MQ=255) caCTTGAAAA‑CAAAAAAAAAAAAA‑CAACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACag < 1:2067037/235‑1 (MQ=255) cttgagacaacAAAAAAAAAAT‑CTGCCGCCAATAAATAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTGCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACt < 2:2092001/229‑1 (MQ=255) cTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGTAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTa > 1:152052/1‑239 (MQ=255) cTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTa > 2:581661/1‑239 (MQ=255) tGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAAt > 1:1845968/1‑78 (MQ=255) aataaataAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGc < 1:1864735/156‑1 (MQ=255) aataaataAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGc > 2:1864735/1‑156 (MQ=255) aaaaaaaaatA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGc < 2:1360016/235‑1 (MQ=255) | TATTGAGTGCGATAGTGGCATCAGTTTTATCCAGTGAAACTAAAATGTCACCTTGTCGAACGTAGTTCGTATCTTTATGATTAACGACAGTGACACTACCTGAGACTTGTGCAGAAATTGG‑ATCTGCATTCCCCGT‑GACATAGGCGTCATCTGTACTAATCATGTCTTCTAATTCCATTGACCAATAGGCATAGGCACCTGAAAA‑CGCAATAAATAAAA‑CTACCGCCAATAAAGAAAAGTATTTTCTTCTGTTAGAATGTTTTTTATTTGAATTAATCTGTTCCACTATTATCTCTCATTTCTCATAGATGAAATTTATGAATTGAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAACAACAGAGGACTAAACCGTGGC > NC_000913/2483054‑2483499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |