Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,101,5140GT38.5% 135.3 / 53.6 78intergenic (+84/‑176)sodA/kdgTsuperoxide dismutase, Mn/2‑keto‑3‑deoxy‑D‑gluconate transporter
Reads supporting (aligned to +/- strand):  ref base G (5/43);  new base T (30/0);  total (35/43)
Fisher's exact test for biased strand distribution p-value = 9.44e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGACAGGTGATGGAAATGCAG‑ATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCC  >  NC_000913/4101281‑4101741
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                         
ggCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATAAGCTTAAAAAATGAACCATCGCCAACGGCGGGTGGGCTTTTtgtat                                                                                                                                                                                                                                        >  2:980427/1‑236 (MQ=255)
 gcgcTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTCAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTtttgtaca                                                                                                                                                                                                                                     >  2:603130/1‑235 (MQ=255)
  cgcTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGAGGGTTTTTTTTGATTaa                                                                                                                                                                                                                                    >  1:802386/1‑239 (MQ=255)
             tCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATaa                                                                                                                                                                                                                         <  1:2086285/239‑1 (MQ=255)
              cccGATTGTGGGCCTGGATGTGGGGGAACATGATTGCTACCTAAAATTCCAAAACCGCCGTCCGGACTACATTAAATTGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTTCGGCGAAAAAATAATCATTTGCCGCCGTCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTGTTTTGTGATCAATTTCAAAATaaa                                                                                                                                                                                                                        <  2:1753028/239‑1 (MQ=255)
              cccGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTTGTTCATTTTaaaaaaaa                                                                                                                                                                                                                         >  2:2086285/1‑239 (MQ=255)
                               aTGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat‑aa                                                                                                                                                                                                       <  1:1496039/238‑1 (MQ=255)
                                    tgGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGTTCCATTTCAAAAAAAAAAAAAAGAACCGaa‑caaaaaaa                                                                                                                                                                                                 >  2:1772149/1‑239 (MQ=255)
                                        aaCATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTGTGATTAAATTTAAAATAAAAACAAAGATCCGac‑aaaaataaaaaa                                                                                                                                                                                             >  1:1534500/1‑237 (MQ=255)
                                         aCATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAg                                                                                                                                                                                            <  1:1772149/239‑1 (MQ=255)
                                          cATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGTTTTTTTGTGATCAATTTCAAAAAAAAAAAAAAGAACCGGT‑AAAAATacaacaac                                                                                                                                                                                           >  2:869841/1‑237 (MQ=255)
                                            tGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑t                                                                                                                                                                                        <  1:754181/239‑1 (MQ=255)
                                            tGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGTTACATTTCAAAATAAAAACCAAAAACCGat‑aaaaaaaaaaaa                                                                                                                                                                                             >  1:1484996/1‑233 (MQ=255)
                                             gCTTACTACCTGAAATTCCAGAACCGCCGACCGGACTACATTAAAAAGTTCTGGAACGTGGTGAACTGGGACGCAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTCTAGGCCGCATATCAGCTTAAAAACTGAACCATCGCCAACGGC‑GGAGGGCTTCTTTTGATCCATTTTAAAAACAAAACAAAGTTCCGGT‑AATAAGAAAACaaagg                                                                                                                                                                                         >  2:1415521/1‑234 (MQ=255)
                                              cTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGATTAATTTTAAAAAAAAAAAAAAAAACCCgt‑aaaaaaaaaaaaacagt                                                                                                                                                                                        >  2:1748047/1‑231 (MQ=255)
                                                 actacCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCaa                                                                                                                                                                                   <  2:579369/239‑1 (MQ=255)
                                                 actacCTGAAATTCCAGAACCGCCGTACGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCaa                                                                                                                                                                                   <  2:1948182/239‑1 (MQ=255)
                                                  ctacCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAAt                                                                                                                                                                                  <  1:1834135/239‑1 (MQ=255)
                                                    acCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGAGGGTTTTTTTTGATCAAATTCAAAATAAAAAAAAAGATCCGAT‑AAAAATAAAAAAGCG‑GTTCCATTg                                                                                                                                                                                >  2:526512/1‑239 (MQ=255)
                                                     ccTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGATCAATTTTTAAATAAAAACAAAGATCCGAT‑AAAAATAAAACAACG‑ttttcattta                                                                                                                                                                               >  1:93644/1‑232 (MQ=255)
                                                       tGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGAtg                                                                                                                                                                             <  1:1366997/239‑1 (MQ=255)
                                                            ttCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTTTGATTAATTTTAAAAAAAAAAAAAAAAACCCATAAAAAAAAAAAAAGCG‑TTT‑AATTTATGTgggt                                                                                                                                                                        >  2:90998/1‑237 (MQ=255)
                                                            ttCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGGTTTTTTTGGTTAATTTTAAAATAAAAACAAAGATCCGAT‑AAAAATAAAAAAACG‑GGTCAATTTATGTgggt                                                                                                                                                                        >  2:1366997/1‑237 (MQ=255)
                                                                 gAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑t                                                                                                                                                                  <  2:213895/239‑1 (MQ=255)
                                                                   aCCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑t                                                                                                                                                                  <  1:1323539/237‑1 (MQ=255)
                                                                   aCCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑t                                                                                                                                                                  <  2:2192382/237‑1 (MQ=255)
                                                                    ccgccgTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGATCAATTTCAAAATAAAAACAAAGATCCGAT‑AAAAAAAAAAAAGCG‑ATTTAATTTATGTGGGTTTGA‑Tc                                                                                                                                                                 >  1:1769164/1‑237 (MQ=255)
                                                                       ccgTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑t                                                                                                                                                                  <  1:571478/233‑1 (MQ=255)
                                                                         gTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTa                                                                                                                                                          <  1:132298/239‑1 (MQ=255)
                                                                                 tACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                                                                                                                          <  1:1122650/186‑1 (MQ=255)
                                                                                   cATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAAc                                                                                                                                                                                              <  1:939651/195‑1 (MQ=255)
                                                                                     ttAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAaatga                                                                                                                                              <  1:1800288/239‑1 (MQ=255)
                                                                                      tAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTTATCAAATTCAAAATAAAAAAAAAAAACCGAT‑AAAAAATAAAAAACG‑TTTCCATTGTTGTGGTTTTTA‑TTACTTTTTTTTTTTAaatgaa                                                                                                                                             >  2:2068153/1‑239 (MQ=255)
                                                                                       aaaGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAaatgaat                                                                                                                                            <  2:1041268/239‑1 (MQ=255)
                                                                                       aaaGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAaat                                                                                                                                                <  1:90998/235‑1 (MQ=255)
                                                                                           agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGAGTAATTTTTAAAAAAAAAAAAAGAAACGga‑aaaaaaaaaa                                                                                                                                                                                               >  2:1122650/1‑186 (MQ=255)
                                                                                           agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGGTCCAATTTAAAAAAAAAAAAAAAATCACCT‑AAAAAAAAAAAAAGG‑GTTTAATTTTTGTGGTTTTTATTCAC‑TTTATTTTTTAaatgaaaatgt                                                                                                                                        >  2:170900/1‑234 (MQ=255)
                                                                                             ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTTGTTAAATTT‑AAAAAAAAAAAAAAAATACGAT‑AAAAAAAAAAAAAAGTTTTTAATTTTTTTGGTTTTG‑‑TTACTTTTTTTTATTtaaaaaaaat                                                                                                                                          >  2:1197536/1‑228 (MQ=255)
                                                                                             ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGGTTAATTTTAAAAAAAAAAAAAAAATACCGT‑AAAAATAAAAAAACG‑GTTCAATTTATGTGGGTTTGA‑TCCCTTTTTTTTATTaaaag                                                                                                                                               >  1:2153168/1‑228 (MQ=255)
                                                                                                    aCGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATATGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                                                                                                                               <  1:1142807/239‑1 (MQ=255)
                                                                                                       tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                                                                                                                          <  1:1793900/164‑1 (MQ=255)
                                                                                                            aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTTATCAATTTTTAAATAAAAAAAAAGATCCGCT‑AAAAAAAAAACAGAG‑TTTTACTTTTGTTGGTTTTGT‑TAACTTTTATTGTTTAAATGAAAATATATATTCTTGTtcatca                                                                                                                        >  2:441412/1‑238 (MQ=255)
                                                                                                               tGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAacac                                                                                                                    <  1:1197536/239‑1 (MQ=255)
                                                                                                                 ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGGTATATTTCTAACAAAAAAAAACAATCTGCT‑AAAAATAAAAAAGCG‑CTTCACTTGTTTTGGTTTTTT‑TCACTTTTTTTTTTTTAATAACTGTCTATTTCTCTTTTCATCAacaccg                                                                                                                  >  2:2214225/1‑237 (MQ=255)
                                                                                                                 ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGGTTAAATTTAAAAAAAAAACAAAGATCCGat‑aaaaaaaaaa                                                                                                                                                                                               >  2:1793900/1‑164 (MQ=255)
                                                                                                                       agcagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                                                                                                                          <  1:1738051/148‑1 (MQ=255)
                                                                                                                       agcagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTc                                                                                                            <  1:980427/239‑1 (MQ=255)
                                                                                                                             ggCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCt                                                                                                             <  1:1748047/232‑1 (MQ=255)
                                                                                                                                 cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGATCAAATTTAAAAAAAAAAAAAAGAACCGat‑aaaaaaaaaa                                                                                                                                                                                               >  2:1738051/1‑148 (MQ=255)
                                                                                                                                    tttGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTa                                                                                              <  2:2067339/239‑1 (MQ=255)
                                                                                                                                        cggcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGGTCAATTTCAAAATAAAAAAAAAAATCCGAT‑AAAAAAAAAAAAACG‑TTTTAATTTTTTTGGGTTTTA‑TTACTTTTTTTTATTAAAAGAAAGTCTATTTTTGTTTTCTTCAAAAATTATGCTCCCTTTATG‑AATTaataa                                                                                          >  2:71329/1‑235 (MQ=255)
                                                                                                                                         ggcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCAt                                                                                         <  1:1975366/239‑1 (MQ=255)
                                                                                                                                            gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCa                                                                                       <  1:443458/238‑1 (MQ=255)
                                                                                                                                            gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAg                                                                                      <  1:1962608/239‑1 (MQ=255)
                                                                                                                                                              cgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGa                                                                   <  1:1647018/239‑1 (MQ=255)
                                                                                                                                                                  tgctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGACAgg                                                               <  2:1465501/239‑1 (MQ=255)
                                                                                                                                                                    ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑t                                                                                                                                                                  <  1:765218/140‑1 (MQ=255)
                                                                                                                                                                            aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCAtt                                                                                                        <  1:2062237/190‑1 (MQ=255)
                                                                                                                                                                              gCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAaatg                                                                                                                                               <  1:2000446/149‑1 (MQ=255)
                                                                                                                                                                              gCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGGTCAAATTTAAAAAAAAAACAAAGATCCGAT‑AAAAAAAAAACAACG‑GTTTAATTGATGTGGGTTTTA‑TCACTTTTATTTATTAAAAGAATGTCTATCTTCGTTTTCCTCAACACTTATGCTCCCTTTAGG‑AAATATGCATCAGCCCTTAAAAATATG‑CCGACAGGAGATGGGAATGc                                                   >  2:296923/1‑239 (MQ=255)
                                                                                                                                                                              gCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGATCAATTTCAAAATAAAAAAAAAAATCCCGT‑AAAAAAAAAAAAACG‑TTTCCATTTATTTGGGTTTTT‑TTACTTTTATTTATTAAATAAAAGTCTTTCTTTGTTTTCATCCATACTAATTCTCCATTTAGG‑AATTACGCATCAGCCCTTTAAAATATGCCCGACAggggtggtaatgt                                                    >  2:1947349/1‑228 (MQ=255)
                                                                                                                                                                              gCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGTTCAATTTCTAAATAAAAAAAAAAAAACCAT‑AAAAAAAAAAAAACG‑GTTCAATTGATGTGGTTTTTA‑TTACTtttttt                                                                                                                                                        >  2:765218/1‑140 (MQ=255)
                                                                                                                                                                                 tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGAt                                                                                                                                                                                                                                       <  1:1390023/61‑1 (MQ=255)
                                                                                                                                                                                      gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTTTGGTCCATTTTAAAATAAAAACAAAGATTCGAT‑AAAAATAAAAAAGCG‑TTTTAATTTTTGTGGGTTTTT‑TTACTTTTATTGATTAAATGAATGTTTATCTTCGGTTTCATCAACACTGATTCTCCCTTGAGG‑aaatta                                                                                             >  2:2062237/1‑186 (MQ=255)
                                                                                                                                                                                      gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAAATTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAACCCTTAAAAATATG‑CCGa                                                                   <  1:1360152/215‑1 (MQ=255)
                                                                                                                                                                                        cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGGTCAATTTTAAAATAAAAAAAATGATACGAT‑AAAAATAAAAAAACG‑TTTTAATTTATGTGGGTTTTT‑TCACTTTTTTTTATTAAATGAATGTCTAtt                                                                                                                                     >  2:2000446/1‑148 (MQ=255)
                                                                                                                                                                                          cATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTTTGTTCAATTTTAAAATAAAAAAAAAGATACCAT‑AAAAATAAAAAAAGG‑TTTTACTTTATGTGGGTTTGA‑TCACTTTTATTGATTAAAAGAAATTCTATCTTTGTTTTCATTAACACTGATACTACATTTAGG‑AATTATGCATCAGCCCTTTAAAAAATT‑GCGCAAGTGGATGGAAAAGCAG‑aaaaaaacc                                       >  2:1873920/1‑235 (MQ=255)
                                                                                                                                                                                          cATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGATTAATTTCAAAAAAAAAAAAAATAATCGAT‑AAAAAAAAAAAAGCG‑GTTTCATTTATTTGGGTTTTG‑TCACTTTTATTTTTTAAAATAAAGTTTTTTTTCGTTTTCCTCAAAAACTATTTTCCATTTAGGAAATTAC‑CAACAGCCCTTTAAAAAATT‑CCCAAAAGGGATGGGAAAGCAGAATaaaaac                                        >  2:1111845/1‑236 (MQ=255)
                                                                                                                                                                                           atatCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg                                                                                                               <  1:944086/168‑1 (MQ=255)
                                                                                                                                                                                           atatCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTTGTCAATTTTaaa                                                                                                                                                                                                                             >  2:1390023/1‑61 (MQ=255)
                                                                                                                                                                                              tCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGACAGGTGATGGAAATGCAG‑ATAAAACGCTCGAt                                  <  1:1797216/239‑1 (MQ=255)
                                                                                                                                                                                                aGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGGTTTTTTTTGTTCAATTTCTAAAAAAAAAAAAATATTCGGT‑AAAAAAAAAAAAGCG‑TTTTTATTTATGTGGGTTTTA‑TTACTTTTTTTTATTTAATGAATTTTTATTTTCGTTTTCATCCACACCGTTGGTCCCTTTAGG‑AATTACGCATCAACCCTTCAAAATATT‑CCGACAGGGGTTGGAAAAGGAG‑ATAAAAccactggttt                                >  2:2117114/1‑230 (MQ=255)
                                                                                                                                                                                                     aaaaaaTGAACCATCGCCAACGGC‑GGGGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAAAGATCCGAT‑AAAAAAAAAAAAACG‑TTTTAATTTATGTGGGTTTTA‑TTACTTTTTTTTATTAAATGAAAGTCTATTTTTGTTTTCATTAACACTGATGCTCCATTTAg                                                                                                     >  2:944086/1‑168 (MQ=255)
                                                                                                                                                                                                         aaTGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAaat                                                                                                                                                <  2:1788376/121‑1 (MQ=255)
                                                                                                                                                                                                         aaTGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCg                                                                    <  1:2040104/195‑1 (MQ=255)
                                                                                                                                                                                                              aCCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGCCAGGTGATGGAAATGCAG‑ATAAAACGCTCGATTGAGAAAATCCCgggg                  <  2:1887727/239‑1 (MQ=255)
                                                                                                                                                                                                                   cGCCAACGGC‑GGTGGTTTTTTTGTGGTCAATTTTAAAATAAAAAAAATGATCCGAT‑AAAAATAAAACAGCG‑GTTTCATTTTTGTGGTTTTTA‑TCACTTTTATTTATTAAATGAAAGTCTAt                                                                                                                                      >  1:1788376/1‑121 (MQ=255)
                                                                                                                                                                                                                              ggtggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGACAGGTGATGGAAATGCAG‑ATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGt    <  1:2068153/238‑1 (MQ=255)
                                                                                                                                                                                                                               gtgggTTTTTTGTGATCAATTTTAAAATAAAAAAAAAGATCCGAT‑AAAAAAAAAACAACG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTTATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGACAGGTGATGGAAATTCAG‑ATAAAAAGCCCGATTGAGAAAAACCCCGGGGggaggagt         >  2:1502359/1‑230 (MQ=255)
                                                                                                                                                                                                                                tggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGACAGGTGATGGAAATGCAG‑ATAAAACGCTCGATTGAAAAAATCCCGGGGGGGATGATGCTCGTcc  <  1:2226435/238‑1 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                         
GGCGCTTCCGGCTTCCCGATTATGGGCCTGGATGTGTGGGAACATGCTTACTACCTGAAATTCCAGAACCGCCGTCCGGACTACATTAAAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGC‑GGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGAT‑AAAAATAAAACAGCG‑TTTCAATTGATGTGGTTTTGA‑TCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG‑AATTACGCATCAGCCCTTAAAAATATG‑CCGACAGGTGATGGAAATGCAG‑ATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCC  >  NC_000913/4101281‑4101741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑