Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,293,036	IS2 (+) +5 bp	intergenic (‑114/‑487)	hns ← / → tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1293036 =	0 (0.000)	82 (0.790)	55/198	1.3	100%	intergenic (‑114/‑491)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
	?	NC_000913	= 1651548	NA (NA)					noncoding (706/706 nt)	IS2	repeat region
*	?	NC_000913	= 1293040	0 (0.000)	76 (0.730)	50/198	1.8	100%	intergenic (‑118/‑487)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
	?	NC_000913	= 1469240	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

TATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1292942‑1293040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  <  NC_000913/1469240‑1469142                                                                                                                                                                                                        aataGGGGCGGTTTGTTGAGGTAATAATAGAGCCTTAAATTGAGTTGGGCAATAGCCAGGAATGTAAGGAAATCAAAATTGTTCTTTCTTTTGTGCCGCT                                                                                                    >  2:80216/5‑100 TATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCT                                                                                                    >  2:97098/1‑100  ATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTA                                                                                                   <  2:1543907/100‑1      GGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACT                                                                                               <  1:1908084/100‑1       GGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTG                                                                                              >  1:127760/1‑100        ggGGTGTGTTGAGGTGATAATAGAGCCTTAGGTTGAGTTGTGCAATAGCCAGGAGTGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGG                                                                                             <  2:2026920/98‑1         TGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGC                                                                                            <  1:226894/100‑1          GGTTTGTTGAGGTAATAATCGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCC                                                                                           <  2:2315369/100‑1          GGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCC                                                                                           >  1:113016/1‑100          GGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCC                                                                                           >  1:78446/1‑100          GGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCC                                                                                           >  1:142239/1‑100          GGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTACTTTATTTTGTGCCGCTAGACTGGCC                                                                                           >  1:1690963/1‑100               GTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTG                                                                                      <  2:526898/100‑1                 TGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAA                                                                                    >  2:2036654/1‑100                 TGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAA                                                                                    >  2:1605307/1‑100                        ATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAG                                                                             >  2:875197/1‑100                        ATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAG                                                                             <  2:1244970/100‑1                        ATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAG                                                                             <  2:1244900/100‑1                         TAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGA                                                                            >  1:2018816/1‑100                         TAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGA                                                                            >  1:600879/1‑100                           ATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACA                                                                          >  1:152562/1‑100                             AGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAAC                                                                        >  2:1677127/1‑100                             AGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAAC                                                                        <  1:706888/100‑1                                GCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTTCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAA                                                                     >  2:963886/1‑100                                 CCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAAT                                                                    <  1:888080/100‑1                                    TAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                 >  2:94586/1‑100                                      AATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAC                                                               <  2:2209837/100‑1                                      AATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAC                                                               <  1:1928881/100‑1                                        TTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT                                                             <  1:1062615/100‑1                                         TCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAACTGTACTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAATCAATATTACTTA                                                            <  2:2497728/100‑1                                           AGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAA                                                          <  1:2020566/100‑1                                           AGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAA                                                          <  1:2195172/100‑1                                             TTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATA                                                        <  2:1413781/100‑1                                               GTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAG                                                      >  1:80609/1‑100                                                 GCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTG                                                    >  2:2236601/1‑100                                                   AATAGCCAGGAATGTAAGGAATTCAAAGTTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                  <  2:1030207/100‑1                                                   AATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGTCCCCCTGAATCTCCAGACAACCAATATCACTTAAACAAGTGAT                                                  <  2:2448779/100‑1                                                    ATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA                                                 >  2:1592273/1‑100                                                    ATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA                                                 >  2:1592108/1‑100                                                       GCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATAttg                                              <  1:1747660/100‑4                                                       GCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAAGCTCCAGACAACCAATATCACTTAAATAAGTGATAGTC                                              >  2:1050906/1‑100                                                         CAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATAttggt                                            <  1:1422488/100‑6                                                         CAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATTTAAGTGATAttggt                                            <  1:1807569/100‑6                                                         CAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTT                                            >  2:1661945/1‑100                                                         CAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTT                                            <  2:2271247/100‑1                                                            GAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAn                                         <  2:2409928/100‑2                                                            GAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAT                                         <  2:1212408/100‑1                                                             AATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATA                                        >  1:1385232/1‑100                                                              ATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC                                       <  2:480299/100‑1                                                               TGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACT                                      <  1:2185098/100‑1                                                                   AGGAATTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTT                                  >  2:139542/1‑100                                                                        TTCAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAG                             <  2:1850393/100‑1                                                                          CAAAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGAC                           >  1:1709502/1‑100                                                                          CAAAATTGTTCTTTATTTTGTGCCGCTAGACTAGCCCCATGAATCTACAGACAACCAATATCACTTAAATAAGTGATAGTGTTAATACTAGTTTTTAGAC                           >  1:2349846/1‑100                                                                            AAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTA                         >  1:959834/1‑100                                                                            AAATTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTA                         <  2:2094468/100‑1                                                                             AATTGTTCTTTATTTTGTGCCGCTAGGCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAG                        <  1:1684934/100‑1                                                                               TTGTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTC                      <  2:77301/100‑1                                                                                 GTTCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTAAAAACTAGTATTAAGACTAtcact                    <  1:792337/100‑6                                                                                   TCTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGGCAACCAATATCACTTAAATAAGTGATAGTCGTAATAATAGGATTTGGCCTAGTattca                  >  1:870826/1‑95                                                                                    CTTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGG                 >  2:1507464/1‑100                                                                                     TTTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGA                >  2:374991/1‑100                                                                                      TTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG               <  2:673969/100‑1                                                                                      TTATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG               <  1:2337341/100‑1                                                                                       TATTTTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGA              <  1:1028020/100‑1                                                                                           TTGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAG          <  2:469694/100‑1                                                                                            TGTGCCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGA         <  1:98558/100‑1                                                                                                CCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT     <  2:1817544/100‑1                                                                                                CCGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT     <  1:2177348/100‑1                                                                                                  GCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTG   >  1:2614340/1‑100                                                                                                  GCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTG   >  1:2614293/1‑100                                                                                                   CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  <  1:1529879/100‑1                                                                                                   CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  <  1:1770513/100‑1                                                                                                   CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  <  2:1870184/100‑1                                                                                                   CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  >  1:146313/1‑100                                                                                                   CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  >  1:146305/1‑100                                                                                                                                                                                                        TATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1292942‑1293040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA  <  NC_000913/1469240‑1469142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.