| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 825,235 | 0 | T | A | 32.3% | 81.5 / 19.0 | 64 | M292L (ATG→TTG) | ybhR | putative ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (34/8); new base A (0/20); total (36/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.38e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCC > NC_000913/825010‑825448 | ccTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCCTA‑AAGACAAaaac > 1:335071/1‑238 (MQ=255) aaaCATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGGAAAGTGGCGAATAGGGGT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGGACCACA‑ACGACAAACACGCCCATaaaa > 2:994431/1‑237 (MQ=255) aCATCGCGTGCGCCGATGCCCCTGTCGTGGCCGTTATCCCCAGTAGCGGCCACAAACTTTCCCACACAATATCCAGACTCGCTTCCTTCAAATAAATCTGCTGGGTAAGGCCCGAAAAGTGGCAAATAGGGTT‑AACCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTCCCAC‑CGAAGAAACG‑TAACCGGAAAGGAGAATGGGGGGCATCAAA‑AAGACAAACACGCCGATAAACGcc < 2:1513112/239‑1 (MQ=255) cgcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAAAGCccgcc > 1:298078/1‑238 (MQ=255) gcgTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAAACAAAAACGCCGAAAAACACct > 1:1424218/1‑235 (MQ=255) gTACGCCGCTGACCATGCCGGGGCCTTTATCACTGGTGGCGCCAACAAACTATCCCAAACAATACCCAGGCACGCATCCTTCAAAAAATTCTGCTTGTTAAGGTCAGTAAAGTGGCAAATAGGGTT‑AACCCACGCCAGTTTTT‑GCAGCCAAACCGGCATTTTTTCCAC‑CGGAGAAACG‑TAACGGAAAGGGAAAAGGGCGGGCATCAAA‑AAGACAAACACGCCGATAAACGCCTGCtgtt < 2:619837/239‑1 (MQ=255) cgccgcTGCCCCTGTGTTGGCCGTTCTCACCAGTAGCGGCCACAAATTATCCCAAACAATATCCAGACTCGCATCCTTCAAAAAAATCTGTTGGGTATGGCCCGAAAAGTGGCGAAGGGGGTA‑AATCCACGTCGGGTTTT‑GCAGCAATACCGGCATGTTTCCCAC‑CGGAGAAACG‑TAACCGGAAGGGGGAGGGGCGGGCATCATA‑AAGAAAAACACGCCGATAAACGCCTGCtgttgtg < 2:1178858/239‑1 (MQ=255) gTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAAAAAAACACGCCGATAAAAGCCTGCTTTTGGGTTTGACAAAGtga > 1:34693/1‑239 (MQ=255) ggCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAAAAAACCGATAAAAGCCTGCTGTTGTGTTGAAAAGAGTGAGGaaa > 1:1244594/1‑239 (MQ=255) cccccAGAAGCGACCAAAAACTATCCCACAAAATACCCAGACTCGCATCCTAAAAATAAATCTGCTTGGTAATGTCAGAAAAGGGGCAAATAGGGTT‑AAACCACGTCAGGTTTT‑GCAGCCATACCGGCATTTTTCCCAC‑CGGAGAAACG‑AAACCGAAAAGGAAAAGGGCGGGCATCAAA‑AAGACAAACACGCCGATAAACGCctgctg < 2:764513/205‑1 (MQ=255) tAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAAAACCCCGATAAACGCCCGCTGTTGTGGTGAACAGAGTGGTGAAAACAACAGaaccaaa > 2:312357/1‑232 (MQ=255) cGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCCATAAACGCCTGCTGTTTTGTTGaa > 1:764513/1‑208 (MQ=255) gCCACAAACTATTCCACACAATATCCAGACTCGCCTCCTTAAAATAAATCTGCCTGGTAATGTCCGTAAAGTGGCGAATAGTGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCCGCCTGTTGTCCAC‑CGGAGAAACG‑CAACCGGTAAGGCGAATGGCGGGGTTCAGACAAGCCAAAAAGCCCAGAAAACCCCGGCTGTTGGGTGGAACAGCG‑GATGAAATAAAAAGaaccaaatcaca > 2:991239/1‑227 (MQ=255) tCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAAAACGCCGAAAAACGCCTGCTGTTGGGTTGAACAGAGGGATGAAATCAAAAGACCGAATCCCACCAACGAT‑AAACCa > 1:723068/1‑239 (MQ=255) tatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAACGAT‑AAACCATAAATCAcc > 1:980471/1‑239 (MQ=255) tatCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAAAACGCCGATAAAAGCCTGCTGGTGGGTTGAAAAAAGGGATGAAAACAACAAACCGAATCCCACCAACGGT‑AAAACATAAAACAcc > 1:295339/1‑239 (MQ=255) cTCCCATCCTTAAAATAAATCTGTTGGGTAATTTCCGAAAAGTGGCAAATAGGTTT‑AATCCACGTCAGGTTTT‑GCAGCCATCCCGGCATTTTTTCCAC‑CGGAAAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCAAA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCg < 2:295339/235‑1 (MQ=255) atgcaaTCCTTAAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCCCGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TACCCGGAAAGGGGAATGGCGGGCATAATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCg < 2:1384347/230‑1 (MQ=255) cGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAAAGCCTGCTGTTGTGTTGAAAAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATAACCATCGTAAAGt > 1:1603637/1‑239 (MQ=255) cGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAAAGCCCGCTGTTGTGTTGAACAGAGTGATGAAATCAAAAGACCGAATCCCACCAGCGAT‑AAACCATAAAACACCATCGGaaaat > 1:82084/1‑237 (MQ=255) cATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGCTAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCCTCGTAAAGTAg > 1:266504/1‑239 (MQ=255) cTTAAAAAAAATCGGCTTGTAAATGCCCG‑AAAGGGGGCAAAAGGGTTAAATCCCGGTCAGGTTTT‑GCAGCCATACCGGCATTTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCAAA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAAt < 2:1433664/196‑1 (MQ=255) aaataaatCTGTTGGTTAATGCCCGAAAAGTGGCAAAGAGGTTA‑AACCCACGT‑AGGTTTTGGCAGCCATACCGCATTGTTTTCCAC‑CGGAAAAACG‑TACCGGGAAAGGAAAGGGGGGGGCATCAAA‑AAAACAAACACGCCGATAAACGCctg < 2:683735/152‑1 (MQ=255) ataaatCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAAACAAACACGCCCATAAAAGCCCGCtgttgtg > 1:748194/1‑158 (MQ=255) atCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACAAGCCGATAAAAGCCCGCTGGTGTGTTGAACAGAGGGATTAAATCAACAGACCGAATCCCACCAGCg > 1:1433664/1‑196 (MQ=255) tCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGGATCATA‑AAGACAAAAACGCCGATAAAAGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATACCACCAGCGAT‑AAAACATAAAACACCAACGTAAAATAGAAAAACAC‑CCGCGa > 2:379544/1‑238 (MQ=255) gCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAAAGCCTGCtgttgtgtt > 1:683735/1‑152 (MQ=255) cTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAAAGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑aaa > 1:474189/1‑196 (MQ=255) gTCCGTAAAGTGGCAAATAGGGTT‑AATCCACGTCGGGTTTT‑GCAGCCATACCGGCATGTTTGCCAC‑CGGAGAAACG‑TAACCGGAAAGGAAAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCCCCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGa < 2:337994/239‑1 (MQ=255) tCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAAAGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAAACATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGAt > 1:1500213/1‑239 (MQ=255) cgaaaaGTGGCAAATAGGGTA‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAAAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGAAAAACACGCCGATAAACGCctg < 1:31675/126‑1 (MQ=255) agtgggCGAAGAGGTTA‑AATCCAGTTCAGTTGTT‑GCACCCATCCCGGCATGTTTTCCAC‑GGGAGAACCG‑TAACCGGAAGGGAGAATGGCGGGCATCAAA‑AAAACAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATa < 2:1244594/235‑1 (MQ=255) tGGCAAATAGGGTT‑AATCCCCGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAAAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCAAA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccac < 1:668436/167‑1 (MQ=255) gagAATAGGGTA‑ATACCTCGTAGGGTTTG‑GCAGCCAAACCGGCATTTTTTCCAC‑CGGAGAAACG‑AAACGGGAAAGGAGAATGGGGGGCATCATA‑AAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGcc < 2:1424218/236‑1 (MQ=255) cGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAAAACCCCGATAAACGCCTGCtgttgtgtt > 2:31675/1‑129 (MQ=255) ggTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGGGATGAAAACAACAGACCGAATCCCCCCAGCGAT‑aaa > 2:668436/1‑167 (MQ=255) acccccGTCGGGTTTT‑GCAGCCATCCCGGCATGTTTCCCAC‑CGGAAAAACG‑TAACCGGAAAGGAAAAGGGCGGGCATCAAA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGc < 2:249888/234‑1 (MQ=255) aTCCACTGCAGTTTTA‑GCAGCGATGCCGACATGTTTTCCAC‑CGGAAAAACG‑TAACCGAAAGGGAAAATGGCGGCCATCAAA‑AACACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGc < 2:324807/239‑1 (MQ=255) aTCCACGTCAGGTTTT‑GCTGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGAAAAACACGCCGAAAAACGCCCGGTGTTTTGTTGAACAGAGGGGTGAAATCAACACACCGAAACCCACCAGCGCT‑AAAACATAAAACAACATCGCAAAGGAGAATAGCGC‑CAGCGATCCGGCGAAGGGGAATTGATACCACCC‑GATACCAAACg > 2:1555472/1‑238 (MQ=255) cACGTCAGGTTTT‑GCAGCCATCCCGGCATTTTTTCCAC‑CGGAAAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCAAA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGCCAg < 1:312357/239‑1 (MQ=255) cGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGGGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATAAGCCCA‑GATACCCATCGCCCGc > 1:249888/1‑238 (MQ=255) ttgt‑GCAGCAATCCCGGCATTTTTCCCAC‑CGGAGAAACG‑TAACCGAAAAGGAGAATGGCGGGCATCAAA‑AAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGCCAGCACAAtgg < 2:298078/235‑1 (MQ=255) t‑GCAGCCATACCGGCATGTTTCCCAC‑CGGAAAAACG‑TACCCGGAAAGGAGAATGGCGGGAATCAAA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACag < 1:1616016/108‑1 (MQ=255) ccATCCCGGCATGTTTCCCAC‑GGGAAAAACG‑TACCCGAAAAGGAGAATGGCGGGAATAAAA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGCCAGCACAATGGTGGCCTGGa < 1:1437289/239‑1 (MQ=255) tcccGGCATGTTTCCCAC‑CGGAAAAACG‑TAACCGGAAAGGAGAAGGGCGGGCATCAAA‑AAAAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGtg < 2:1024705/102‑1 (MQ=255) cccGGCATGTTTCCCAC‑GGGAAAAACG‑TAACCGGAAAGGAGAAGGGGGGGCATAAAA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCccacca < 2:1466855/129‑1 (MQ=255) ccGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGGTGTGTTGAACAGAGTGATGaaa > 2:1616016/1‑108 (MQ=255) agTTTTCCACGCGAAAAAACG‑GAACCGAAAAGGAGAAGGGGGGGAATCAAA‑AAAACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGa < 2:266504/237‑1 (MQ=255) ttttCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCaa > 1:1024705/1‑104 (MQ=255) tttCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATT‑AAGACAAACACCCCGATTAACGCCTTTCGTTGTGTTGTAAAGGGAGATGAAAAAAAAAGAACGAATACCACCAGCGATAAAACCAT‑AATCAACCCCGTAAAATAAACCACCGCACAGGGA‑CCGGCGAAGGGGGTTTGTATCTCCCAGGATACC‑ATAGCCCGCACAAAAGAGGCCTTGAAGGTggggctcatt > 2:880797/1‑231 (MQ=255) tttCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTTAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAAcg > 1:1466855/1‑129 (MQ=255) ccaccgaaaaaCGTTAACGGGAAAGGGAAATGGAGGGCATCAAA‑AAGAAAACCACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAAc < 2:723068/231‑1 (MQ=255) gagaAACG‑TAACCGGAAAGGAGAATGGCGGGCCTCATA‑AAGACAAAAACCCCGAGAAACACCTGCCGTTGTGTTGAACAGAGTGATGAAATCAACAGACCCAATCCCACCAGGCAT‑AAACCATAAAACACCAAACGAAAGGAGAACAAGGC‑CAAGGATTCCGCGAAGGGGATTTGATACCCCCC‑GAAACCAAACGACAGCACACTAGGGGCCTGGAAGGGGGCGACAAATAAAACCGGt > 2:206566/1‑239 (MQ=255) aCG‑TAACCGGAAAGGAGAATGGCGGGCATCCTA‑AAGGCAAACACCCCGATAAACGCCCGCTGTTGTGTTTAACAAAGTGATTAAATCAACCGACCGGATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAAACGCCCGCCCCATGGTGGCCTGGAGAGTGGCGACAATTAAACCCGGGAcc > 2:793193/1‑236 (MQ=255) cG‑TACCCGAAAAGGAGAAGGGCGGGCTTAAAA‑AAGACAAACACGCCGATAAACGCCTGCtgtt < 2:1149615/63‑1 (MQ=255) aaCCGGAAAGGAAAATGGCGGGCATCAAA‑AAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCttt < 1:691290/238‑1 (MQ=255) ggAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAAAAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACCGCGC‑CCGCGAACCGGCGAAGGGGGATTGAAAAGCCCC‑GATACCAAACGCCCGCACAATGGTGGCCTGGAAGGTGGGGACAATTAAAACCGGTCCGGCCTTGcc > 2:928279/1‑237 (MQ=255) gAAAGGAGAATGGCGGGCATCATA‑AAGCCAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCa < 1:1264219/177‑1 (MQ=255) aaGGAGAATGGCGGGCATCATA‑AAGAAAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACa > 1:1149615/1‑63 (MQ=255) tGGCGGGCATCATA‑AAAACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAAAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAAAAGCGC‑CAGCCAACCGGCGAAAGGGAATTGATACCCCCC‑GAAAACAAACGCCCGca > 2:1264219/1‑177 (MQ=255) ggCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGaa > 2:1290816/1‑52 (MQ=255) ggCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGaa < 1:1290816/52‑1 (MQ=255) ggCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCg < 2:1469851/106‑1 (MQ=255) ggCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCg > 1:1469851/1‑106 (MQ=255) tA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGc > 1:32332/1‑160 (MQ=255) | CCTTACGTCTAAACATCGCGTACGCCGCTGACCCTGTCGTGGCCGTTATCACCAGTAGCGGCCACAAACTATTCCACACAATATCCAGACTCGCATCCTTCAAATAAATCTGCTTGGTAATGTCCGTAAAGTGGCGAATAGGGTT‑AATCCACGTCAGGTTTT‑GCAGCCATACCGGCATGTTTTCCAC‑CGGAGAAACG‑TAACCGGAAAGGAGAATGGCGGGCATCATA‑AAGACAAACACGCCGATAAACGCCTGCTGTTGTGTTGAACAGAGTGATGAAATCAACAGACCGAATCCCACCAGCGAT‑AAACCATAAATCACCATCGTAAAGTAGAACAGCGC‑CAGCGATCCGGCGAAGGGGATTTGATACGCCCA‑GATACCAATCGCCAGCACAATGGTGGCCTGGAAGGTGGCGACAATTAACGCCGGTACGGCTTTGCC > NC_000913/825010‑825448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |