New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3554077	91 (0.640)	7 (0.050)	6/330	NT	7.1%	coding (993/2706 nt)	malT	mal regulon transcriptional activator
	?	NC_000913	= 3554095	93 (0.660)					coding (1011/2706 nt)	malT	mal regulon transcriptional activator

GGTCGATGAGGTTTTGGATAACGTCGATCTCGCAACGCGCCATTTTCTGTTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCCCTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3553849‑3554077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGTAAAAACAGCCCCTGACGCTCAATCTCTTCGAGGCGCATTTGCCCGTTTTCTTCGCCGGTCACACGGGTGATGAGGGCATCGTTCATTGAGCGCAAAATGGCGCTTTTCAACAGAAAATGGCGCGTTGCGAGATCGACGT  <  NC_000913/3554095‑3553869                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTCGATGAGGTTTTGGATAACGTCGATCTCGCAACGCGCCATTTTCTGTTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCCCTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTTCGCAAGCG                                                                                                                                                                                                                                      >  1:1130869/1‑228                                          ATTTTCTGTTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCCCTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCAGCGCTGGCGCAGGAAGTTACCA                                                                                                                                                                                             <  1:1275687/228‑1                                                                                         ATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGC                                                                                                                                                                                                                                       >  1:1647148/1‑139                                                                                          TCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCG                                                                                                                                                                                                                                      <  2:1644235/139‑1                                                                                                 TGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGCTGGCGCAGGAAGTTACCAAACAGCGGG                                                                                                                                                                                    >  1:172535/1‑182                                                                                                  GTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGCTGGCGCAGGAAGTTACCAAACAGCGGGT                                                                                                                                                                                   <  2:172237/182‑1                                                                                                                                                                       ATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGCTGCCAGTGGGAACTGGCGGCGCTGGCGCAGGAAGTTACCAAACAG                                                                                                                                                                                        <  1:1191777/108‑1                                                                                                                                                                                                            TGTTTGGTAACTTCCTGCGCCAGCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATC                                                                                                                                                   <  2:1189643/108‑1                                                                                                                                                                                                                TGGTAACTTCCTGCGCCAGCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTA                                                                                                                                                            >  1:1047568/1‑95                                                                                                                                                                                                                 GGTAACTTCCTGCGCCAGCGCCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTAT                                                                                                                                                           <  2:1045681/95‑1                                                                                                                                                                                                                                    GCCACCGGTTCCCACTGGCAGGCCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGTAAAAACAGCCCCTGACGCTCAATCTCTTCGAGGCGCATTTGCCCGTTTTCTTCGCCGGTCACACGGGTGATGAGGGCATCGTTCATTGAGCGCAAAATGGCGCTTTTCAACAGAAAATGGCGCGTTGCGAGATCGACG   <  2:540908/228‑1                                                                                                                                                                                                                                     CCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGTAAAAACAGCCCCTGACGCTCAATCTCTTCGAGGCGCATTTGCCCGTTTTCTTCGCCGGTCACACGGGTGATGAGGGCATCGTTCATTGAGCGCAAAATGGCGCTTTTCAACAGAAAATGGCGCGTTGCGAGATCGACGT  <  1:1133438/228‑1                                                                                                                                                                                                                                     CCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGTAAAAACAGCCCCTGACGCTCAATCTCTTCGAGGCGCATTTGCCCGTTTTCTTCGCCGGTCACACGGGTGATGAGGGCATCGTTCATTGAGCGCAAAATGGCGCTTTTCAACAGAAAATGGCGCGTTGCGAGATCGACGT  <  1:1369854/228‑1                                                                                                                                                                                                                                     CCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGTAAAAACAGCCCCTGACGCTCAATCTCTTCGAGGCGCATTTGCCCGTTTTCTTCGCCGGTCACACGGGTGATGAGGGCATCGTTCATTGAGCGCAAAATGGCGCTTTTCAACAGAAAATGGCGCGTTGCGAGATCGACGT  <  1:724516/228‑1                                                                                                                                                                                                                                     CCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGTAAAAACAGCCCCTGACGCTCAATCTCTTCGAGGCGCATTTGCCCGTTTTCTTCGCCGGTCACACGGGTGATGAGGGCATCGTTCATTGAGCGCAAAATGGCGCTTTTCAACAGAAAATGGCGCGTTGCGAGATCGACGT  <  2:565047/228‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTCGATGAGGTTTTGGATAACGTCGATCTCGCAACGCGCCATTTTCTGTTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCCCTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGCTATCACCCGCTGTTTGGTAACTTCCTGCGCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3553849‑3554077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCGCCAGTTCCCACTGGCAGCGCTGGCGCAGGAAGTTACCAAACAGCGGGTGATAGCAGAACCACTCGCCGGTATCATCCATCCGCTGTAAAAACAGCCCCTGACGCTCAATCTCTTCGAGGCGCATTTGCCCGTTTTCTTCGCCGGTCACACGGGTGATGAGGGCATCGTTCATTGAGCGCAAAATGGCGCTTTTCAACAGAAAATGGCGCGTTGCGAGATCGACGT  <  NC_000913/3554095‑3553869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.