New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2807474 =	58 (0.570)	4 (0.040)	4/378	NT	5.1%	coding (343/993 nt)	proX	glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
	?	NC_000913	2807610 =	94 (0.970)					coding (479/993 nt)	proX	glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein

AGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCATAATCAGGGGAACTACGCAGCGATGATG  >  NC_000913/2807237‑2807704                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                       agCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGTCGCGGcaca                                                                                                                                                                                                                                       >  1:707844/1‑239 (MQ=255) agCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcaca                                                                                                                                                                                                                                       >  1:1249503/1‑239 (MQ=255)  ttttagcgaccggcagtgcggaaaacggcacctgcaaccagacgacatctttgcgccgcttcggttcgttactcacccagtacggcgtccaggtgtaataaaacaccggtttgccctctttgtagcgactgatggtgtcggccatcatcgctgcgtagttcccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcc                                                                                                                                                                                                                                        >  2:1192258‑M1/238‑238 (MQ=255)        tCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTa                                                                                                                                                                                                                                 >  1:1108279/1‑238 (MQ=255)        tCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCCTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGGATTTGTTAACGGCGCGGAACAGGGta                                                                                                                                                                                                                                  >  2:400488/1‑236 (MQ=255)                   gcggagaacggcacctgcaaccagacgacatctttgcccggcttcagttcgttactcacccagtacggcgtccaggtgtaataaaacaccggtttgccctctttgtagcgactgatggtgtcggccatcatcgctgcgtagttcccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcCAGGGTTACCTGATCGATa                                                                                                                                                                                                                      <  1:771042‑M1/19‑1 (MQ=255)                    ccTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGAATTTGTTAACGGCGCGGCCCAGGGTTAc                                                                                                                                                                                                                                >  1:113610/1‑227 (MQ=255)                      ttCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGAATTTGTTAACGGGGCGGCACCGGGTTACCTGATCGATAAGaa                                                                                                                                                                                                                  >  2:504303/1‑239 (MQ=255)                                        aGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACaa                                                                                                                                                                                                >  1:1153946/1‑239 (MQ=255)                                           cGTGCGCTGAAAAAATTAGGTTATACCGTCAACAACCCCAGCAAAGTAGATCACAACGTGGCCCACCCCTCTCTTGCTTCCGGCGATGCACCCTTCCCCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACaaa                                                                                                                                                                                               <  1:504303/237‑1 (MQ=255)                                                atctttgcccggcttcagttcgttactcacccagtacggcgtccaggtgtaataaaacaccggtttgccctctttgtagcgactgatggtgtcggccatcatcgctgcgtagttcccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcCAGGGt                                                                                                                                                                                                                                   <  2:911640‑M1/6‑1 (MQ=255)                                                atctttgcccggcttcagttcgttactcacccagtacggcgtccaggtgtaataaaacaccggtttgccctctttgtagcgactgatggtgtcggccatcatcgctgcgtagttcccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcCAGGGt                                                                                                                                                                                                                                   >  1:911640‑M1/192‑197 (MQ=255)                                                                 ataCCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACaaaa                                                                                                                                                                                              >  1:780606/1‑216 (MQ=255)                                                                 ataCCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGAATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACAGCCGACCCGTACAAAATCACCAACATCGCACAACTGaaa                                                                                                                                                                       >  2:47465/1‑239 (MQ=255)                                                                  taCCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTCCAAACTCACCAACATCGCCCAACTGAAAg                                                                                                                                                                      >  2:703325/1‑239 (MQ=255)                                                                        caacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGa                                                                                                                                                                >  1:12266/1‑239 (MQ=255)                                                                                 cAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTAcc                                                                                                                                                                                                                               >  1:437791/1‑167 (MQ=255)                                                                                   gCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCaa                                                                                                                                                      >  1:1024150/1‑238 (MQ=255)                                                                                    cGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCCCAACTGAAAGTTCCGAAGATAGCCaa                                                                                                                                                      >  2:1016315/1‑237 (MQ=255)                                                                                              tACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATa                                                                                                                                           >  2:349105/1‑238 (MQ=255)                                                                                                   cGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGAATTTGTTAACGGCGCGGCACAggg                                                                                                                                                                                                                                    >  1:935420/1‑144 (MQ=255)                                                                                                      tGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGc                                                                                                                                   >  2:686375/1‑238 (MQ=255)                                                                                                        gCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGACTGCCAAACCGTTCGCTACCAAAGGCGAc                                                                                                                                >  2:647889/1‑239 (MQ=255)                                                                                                        acaccggtttgccctctttgtagcgactgatggtgtcggccatcatcgctgcgtagttcccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcc                                                                                                                                                                                                                                        >  1:427985‑M1/136‑136 (MQ=255)                                                                                                        acaccggtttgccctctttgtagcgactgatggtgtcggccatcatcgctgcgtagttcccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcc                                                                                                                                                                                                                                        <  2:427985‑M1/1‑1 (MQ=255)                                                                                                        acaccggtttgccctctttgtagcgactgatggtgtcggccatcatcgctgcgtagttcccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcCAGGGTTACCTGATCGATAAGAAAGCCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGa                                                                                                                                 >  2:771042‑M1/136‑239 (MQ=255)                                                                                                                  gcttgcttCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAGGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCgg                                                                                                                      >  1:612490/1‑239 (MQ=255)                                                                                                                            ggCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTaa                                                                                                                >  1:489206/1‑235 (MQ=255)                                                                                                                            ggCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAA‑TTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGAc                                                                                                                                                                                                        >  2:20113/1‑146 (MQ=255)                                                                                                                            ggCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAA‑TTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGAc                                                                                                                                                                                                        <  1:20113/146‑1 (MQ=255)                                                                                                                                 tGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGCAGATCGCTAAACTGATCGATACCAACGGCGACGGAAAAACGGATTTAACCGGTTGTa                                                                                                       >  2:1219257/1‑239 (MQ=255)                                                                                                                                         tCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctggc                                                                                               <  1:400488/239‑1 (MQ=255)                                                                                                                                         ccACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCctggc                                                                                               <  1:538157/238‑1 (MQ=255)                                                                                                                                          cACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAATCttggcc                                                                                              >  2:665925/1‑238 (MQ=255)                                                                                                                                                              caatGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATc                                                                          <  1:821098/236‑1 (MQ=255)                                                                                                                                                               aCTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGaa                                                                                                                                                                                                                  >  2:478228/1‑102 (MQ=255)                                                                                                                                                               aCTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGaa                                                                                                                                                                                                                  <  1:478228/102‑1 (MQ=255)                                                                                                                                                                  cccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcc                                                                                                                                                                                                                                        <  2:58050‑M1/1‑1 (MQ=255)                                                                                                                                                                  cccctgattatgcgtcacggtgttggtcagttcatacgcggcaagctggtggttgatcgcaccttcgcagccccagcc                                                                                                                                                                                                                                        >  1:58050‑M1/78‑78 (MQ=255)                                                                                                                                                                   cATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTc                                                                                                                                               <  1:318345/165‑1 (MQ=255)                                                                                                                                                                   cATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTc                                                                                                                                               >  2:318345/1‑165 (MQ=255)                                                                                                                                                                           caTGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGa                                                                                                                                                                         <  1:1197401/131‑1 (MQ=255)                                                                                                                                                                           caTGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGa                                                                                                                                                                         >  2:1197401/1‑131 (MQ=255)                                                                                                                                                                           caTGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGCAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGGGCGATCAACCACCAGCtt                                                              >  1:455089/1‑238 (MQ=255)                                                                                                                                                                            tgggacaaaGCAGCCGGTGGCA‑ATAAGAAATTTTACCGGGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAGGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGc                                                            <  2:612490/232‑1 (MQ=255)                                                                                                                                                                            aTGTCCGAGGCTACCGG‑GGCGAATAAGAATTTTTAGCGTGAAGGGTTAGTTGTTAACGGCCCGGCCCAGGGTTACCTGATCGATAAGAAACCCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGc                                                            <  2:1108279/239‑1 (MQ=255)                                                                                                                                                                            aTGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGc                                                            <  1:647889/239‑1 (MQ=255)                                                                                                                                                                             tGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGcc                                                           >  2:1133813/1‑239 (MQ=255)                                                                                                                                                                                aCGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCcgcg                                                        >  1:583861/1‑239 (MQ=255)                                                                                                                                                                                      cTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcac                                                                                                                                                                                                                                        >  1:1073710/1‑57 (MQ=255)                                                                                                                                                                                      cTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcac                                                                                                                                                                                                                                        <  2:1073710/57‑1 (MQ=255)                                                                                                                                                                                      cTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAAcc                                                                                                              >  1:115472/1‑179 (MQ=255)                                                                                                                                                                                      cTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAAcc                                                                                                              <  2:115472/179‑1 (MQ=255)                                                                                                                                                                                       tGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGaa                                                  <  1:54409/238‑1 (MQ=255)                                                                                                                                                                                       tGCAGGTGCCA‑ATAGGAAATTTTATCGAGAAGGGGTATTTGTAAACGGCGCGGCACAGGTTTCCCTGACCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGaa                                                  <  2:707844/238‑1 (MQ=255)                                                                                                                                                                                        gccgtgggCG‑ATAAGAAATTTTACGGGGAAGGGGTATTTGTTAACGGCGCGGCCAAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACt                                                <  2:1105355/233‑1 (MQ=255)                                                                                                                                                                                         ccGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGa                                                   >  2:58110/1‑235 (MQ=255)                                                                                                                                                                                           ggTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGAc                                             <  1:647285/239‑1 (MQ=255)                                                                                                                                                                                           ggTGCCG‑ATAAGAATTTTGACCGTGAAGGGGTATTTGTCAACGGCGCGACACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGAc                                             <  2:1073946/239‑1 (MQ=255)                                                                                                                                                                                                cG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAac                                         >  2:1080852/1‑238 (MQ=255)                                                                                                                                                                                                         aaTTTTATCGTGAAGGGTTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAACCCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGt                                    <  1:319215/235‑1 (MQ=255)                                                                                                                                                                                                         aaTTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACg                                <  1:1219257/239‑1 (MQ=255)                                                                                                                                                                                                          gcaagctggtggttgatcgcaccttcgcagccccagcCAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGAt                                                                                                                    <  1:654247‑M1/117‑1 (MQ=255)                                                                                                                                                                                                          gcaagctggtggttgatcgcaccttcgcagccccagcCAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGAt                                                                                                                    >  2:654247‑M1/38‑154 (MQ=255)                                                                                                                                                                                                           ttttATCGTGAAGGGGTATTTGTTAACGGCGCGACACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTGCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCGGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCa                              <  1:332096/239‑1 (MQ=255)                                                                                                                                                                                                                         ggTATTTAGTAACGGCACGGCACAGGGTTACCTGCACGATAAGAAACCCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCATAATCAGGGGaa                  <  2:1024150/237‑1 (MQ=255)                                                                                                                                                                                                                               tGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGGGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCATAATCAGGGGAACTACGCa           >  2:958632/1‑238 (MQ=255)                                                                                                                                                                                                                                   aaCGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCATAATCAGGGGAACTACGCAGCgat      >  2:231628/1‑239 (MQ=255)                                                                                                                                                                                                                                   aaCGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCATAATCAGGGGAACTACGCAGCgat      <  1:1023237/239‑1 (MQ=255)                                                                                                                                                                                                                                     cGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGaa                                                                                                                                                               <  1:895080/84‑1 (MQ=255)                                                                                                                                                                                                                                     cGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGaa                                                                                                                                                               >  2:895080/1‑84 (MQ=255)                                                                                                                                                                                                                                        cgcgGCACAGGGTTACCTGATCGATGAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCATAATCAGGGGAACTACGCAGCGatgatg  >  1:767592/1‑238 (MQ=255)                                                                                                                                                                                                                                        cgcgGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCCTAATCAGGGGAACTACGCAGCgatgagc  >  2:1035129/1‑236 (MQ=255)                                                                                                                                                                                                                                        cgcgGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCATAATCAGGGGAACTACGCAGCGatgatg  >  1:233198/1‑238 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                       AGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCG‑ATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATAAGAAAACCGCCGACCAGTACAAAATCACCAACATCGCACAACTGAAAGATCCGAAGATCGCCAAACTGTTCGATACCAACGGCGACGGAAAAGCGGATTTAACCGGTTGTAACCCTGGCTGGGGCTGCGAAGGTGCGATCAACCACCAGCTTGCCGCGTATGAACTGACCAACACCGTGACGCATAATCAGGGGAACTACGCAGCGATGATG  >  NC_000913/2807237‑2807704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.