| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,862,670 | 0 | T | C | 38.2% | 10.7 / 20.4 | 48 | pseudogene (934/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base T (10/11); new base C (0/13); total (21/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGTTAA‑GGTTGCGGGAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAA > NC_000913/3862435‑3862904 | aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCACCGGGGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGTTTA‑AGTGTCGGGGATccg > 2:262165/1‑237 (MQ=255)aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGTTAA‑AGATGCGGGGATcc > 1:1768040/1‑237 (MQ=255)aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGCAATTCCCACCAGCATGGC‑GGTTAA‑GGGTGTGGGGAtacg > 1:1797270/1‑236 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACAAGCCTGGC‑GGTTTA‑ATGTGCGTGAAACAACAAACGCACCA‑CCTTTAccc > 2:1668528/1‑238 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGTTTA‑GGGTGGGGGAGACAGCAAACCCGCCC‑CTTTTAccccc > 1:209113/1‑237 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGGAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGGTAA‑AGTTGCGGGGAAAAGAAAACCCCGCA‑CCTTTAc > 1:462016/1‑235 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGGTAA‑GGGTGGGGGGAACAGCAAAACCCCCA‑CTTTTAccccaat > 1:1234967/1‑235 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGCGGGTTAA‑GGGT‑CGGGGAGCAGGCAGCCCGCCC‑CCTTTAccccgatt > 2:696285/1‑233 (MQ=255) gCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGCGGGTAAA‑GGTTCGGGAAATCA‑CAAACACCCCACCTTTTACCCGA‑TTTGcc > 1:923975/1‑239 (MQ=255) gaaaggcgtgATACAGTGTCGCGACAAACCCGAGTCACCCAGCCCTCCCCCGATGGCCCCCACAACACAAAAGAGATACATTGGGGTGAAAATGGAGGCCGCCAGACGGGGGTGT‑CCCGAAACGAGAAGCGGAGAAAGAAACAGGAGGGTAAATCCCA‑GGGG‑TT‑C‑GGTATTCCCCACAAGAAGGGC‑GTTTAA‑GGTGGGGGGAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTg < 2:62530/230‑1 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGCGGGTTAA‑TATGGC‑GGAATCAGAAAACCCGCCA‑CATTTACCCCA‑CTTTcagtctcggcg > 1:2257592/1‑229 (MQ=255) catttagcgggTAACCCCTATCCAACCAGCCCCCCCCCCATGTTCCCCACCACCACAAAGAAATAAATCGCGGTCGTGATAGGGGCGCCCAGCACGG‑TTGTCACCGCAAACAGAAACGGAGAAATAAAAGAGAAGGAAAATTCCG‑GGGT‑TT‑C‑GAAATTCCCCCCCAGCAGGGT‑GGTTAG‑GGTGGGGGGATTAAACAGGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTa < 2:234818/230‑1 (MQ=255) cgCCCACAGCAACAAAGAGATATATGGCGGTCGACATAGGGGCCGCCTGCAGGGGTTGT‑CCGGAAAACAGCGA‑GGGGAAAAGGAGAGGGAAGTAAAACCCC‑GGGGTTT‑G‑GGTATTCCCCAGCAGCGTGGC‑GGTTAG‑GGTGGGGGGAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACAACG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑a < 2:2174367/238‑1 (MQ=255) cacaccaAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGTTAA‑AGATGCGGGGAAAAGGAAAACCCCCC‑CCTTTTCCCCC‑GTTTCCGGTGCGGGACGGAT‑AGAAATCG‑CTCAAAAAAAAGCCACGGCGCCCAAAG‑TTTTTTAGTT‑atagcgcg > 2:1087858/1‑232 (MQ=255) cacaccaAAGAAAAACATTCCGGGAAAAATTGAGCCCGCCAGCACGGCGTAT‑ACCGAAAACAGCAACGGTAAAATGAACAGGAAGGTAAATCCCA‑GCGG‑TT‑C‑GGTAATCCCCACCAGCAGGGG‑GGTTAG‑GGTTGGGGAAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGc < 2:806283/177‑1 (MQ=255) agaTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGTTAA‑AGGTGGGGGGAACAGCAAACCCGCCA‑CCTTTAACCGC‑ATTTTCGGGGCGGGCGTGAA‑g > 1:806283/1‑177 (MQ=255) tGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGATAA‑GGTTGCGGGGAACAGCAAAACCGCCC‑CTTTTAACCCA‑TTTTTCg > 1:1838856/1‑143 (MQ=255) ggCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGCGGGTTAG‑GGTTGGGGGATTAACAAACCCCCCCC‑CTTTTACCGAA‑TTTTc > 1:1204193/1‑139 (MQ=255) gccAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGGTAAGGGTTCGGGGAATAACAAAACCCCCCC‑CTTTAACCCCT‑TTTTCC‑GTGCGGCCGGGGA‑AGACAACGCCAAAAAAAAAGCCCCCGGCCCCAAAAA‑TTTTT‑AGTTAACCGTGC‑GGGGACAACCGCCCTCCCGGGAAAACGAATTTCAGCg > 2:796116/1‑239 (MQ=255) gccAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGGTAA‑AGGTTCGGGAAAAAACAAACCCGCCC‑CCTTTACCCGACTTTTCGGGGGGGGCGGGGAG‑TAAAATGC‑CTAAAAAAAGGCCCCCGCCCCCAAAAT‑TTTTTGTGTT‑A‑CGTGGAGGGGAAAAACCCCCTCCGGGGAAAACC‑ACTTTAGccg > 2:2072152/1‑237 (MQ=255) gccAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGGTAA‑AGGTGCGGGGAACAGCAAACCCGGCA‑ATTTTTTCCGA‑GTTTTCCGCGCGGGAGGGAAGGAAAAAGG‑GCAAAAAAAAGCCCA‑GGCACCAAAAAGTTTTTGATTT‑ACGGGGCAGGGGAAAA‑CGCCTTCCCGGGACCACgcattttgca > 2:1966635/1‑229 (MQ=255) aaaCAGAAAGGGTGAAAGGAACAGGAAGGTAATTCCCA‑GCGT‑TG‑C‑GGTAATCCCCCCCAGCAGGGC‑GGTTAG‑GGTGGCGGGAACCAGAAGGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGTGGCTCGGCGCTCAAACTg < 1:1261233/235‑1 (MQ=255) tGAACAGGAAGGTAAATTCCG‑GCGG‑TT‑C‑GGTATTCCCCCCCAGCTGGGG‑GGTTAG‑TGTGGCGGGAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:1259036/239‑1 (MQ=255) agAACAGGAAGGTAAATTCCA‑GGGG‑TG‑C‑GGTAATCCCCACCAGCAGGGC‑GGTTAA‑GGTTGGGGAAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:262165/238‑1 (MQ=255) gggaattAAATCCCACGCGG‑TG‑C‑TGTCATCCCCACCAGCATGTG‑TGTTGA‑GTTGGCGGAAACCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 2:252301/223‑1 (MQ=255) gAAGGTAAATTCCG‑GGGG‑TTCC‑GATATCCCCCACGAGCTGGGC‑GTTTAG‑GGTTGGGGAAACAACCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 2:2298484/233‑1 (MQ=255) aagaaataTTCCC‑GCGG‑TT‑C‑GTTTATTCCCCCAAGCAGGGC‑GGTGAG‑GGTTGCGGTAACCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 1:1401219/219‑1 (MQ=255) aagTAAATTTCA‑GGGGTTT‑C‑GGTAACCCCCCCCGGCAGGGC‑GTTTAG‑GGTGGCGGAAAGACGAAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:2054818/229‑1 (MQ=255) tccccacGG‑TT‑CGGGAAATTCCCACGACCTTGGC‑GGTTAG‑GGGTCCGGGAACCAGAAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATg < 1:1504087/233‑1 (MQ=255) ttggttAATCCCCCCCAGCGTGGC‑GGTTAA‑GGTTGGGGAAACCAGAAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑a < 1:2207401/128‑1 (MQ=255) tAATCCCCACCAGCAGGGC‑GGTTAA‑GGTGGGGGAAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCaa < 2:1099261/114‑1 (MQ=255) ccacaaGCAGGGC‑GGTTAA‑GTTGGCGGGAACAAGCAACCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGaa < 1:1773244/184‑1 (MQ=255) ccgcgatgtGGG‑GGTTGG‑GGTCGCGAGAACCAGAGACCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 2:1234967/231‑1 (MQ=255) ccccaGCAGGGC‑GTTTAG‑GGTTGCGGGAAACAGCAACCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:1583587/237‑1 (MQ=255) caccaGCAGGGC‑GGTTAA‑GGTGGCGGGAACCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:796116/239‑1 (MQ=255) caccaGCAGGGC‑GGTAAT‑GGTGGCGGAAATCAGCAACCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCCCCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGAc < 1:2201794/239‑1 (MQ=255) caGCATGGC‑GGTTAA‑GGTTGCGGGGAACAACAAACCCCCCC‑CCTTTACCCGG‑TTTTCCGGGGCGGCAGTGAA‑GTACACCG‑CTAAAGAAAATCCCACGGCACCAAAAA‑ttttttg > 1:1099261/1‑112 (MQ=255) c‑GGTAAA‑GGTAGCGGAACACAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:1668528/238‑1 (MQ=255) c‑GGATAA‑GGTTGGGGGAACCGGAAGGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:1087858/238‑1 (MQ=255) agtgttaggggAATAACCAGGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTcc < 1:2072152/231‑1 (MQ=255) agtgtggCGGAAATCAGCAGCCCCGCCA‑CTTTTCCCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTc < 1:1933047/232‑1 (MQ=255) agggggggggaaaTCAGGAACGCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACATCTGCCGGACCAAAGATAAACTGTcc < 1:295286/228‑1 (MQ=255) gtgggggggAACAAGCAACCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAAc < 2:940041/155‑1 (MQ=255) gggggAACCAGCAACCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGa < 1:1380092/236‑1 (MQ=255) gCGGGAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCaa > 1:1997167/1‑205 (MQ=255) gCGGGAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGAt > 1:1971669/1‑239 (MQ=255) gggAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGa > 1:1854644/1‑239 (MQ=255) gAACCAACAGGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGaa < 1:1290091/238‑1 (MQ=255) aTCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTg > 1:940041/1‑161 (MQ=255) | ATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGT‑ACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCA‑GCGG‑TT‑C‑GGTAATTCCCACCAGCATGGC‑GGTTAA‑GGTTGCGGGAATCAGCAAGCCCGCCA‑CTTTTACCCGA‑TTTTCCGGTGCGGCAGTGAA‑GTACATCG‑CTAAAGAAATGCCCACGGCACCAAAGA‑TTTTTGAGTT‑ACCGTGCAGGGCAAAACCGCCTTCCGGGAACAACG‑ATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAA > NC_000913/3862435‑3862904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |