Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,778,463 T→G K1422Q (AAA→CAA)  ypjA ← adhesin‑like autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,778,4630TG100.0% 386.3 / NA 99K1422Q (AAA→CAA) ypjAadhesin‑like autotransporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (55/44);  total (55/44)

ACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTTCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGACACCGTCCAGATAGAAA  >  NC_000913/2778239‑2778692
                                                                                                                                                                                                                                |                                                                                                                                                                                                                                      
aCTGCTGAATGAGGCTTGAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCa                                                                                                                                                                                                                           <  2:643938/238‑1 (MQ=255)
                   aTACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCggg                                                                                                                                                                                                       <  2:115460/239‑1 (MQ=255)
                         gcctgGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCa                                                                                                                                                                                                                           >  2:998043/1‑213 (MQ=255)
                         gcctgGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCa                                                                                                                                                                                                                           <  1:998043/213‑1 (MQ=255)
                         gcctgGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATc                                                                                                                                                                                                 >  1:256992/1‑239 (MQ=255)
                                 tatTCCACGTCTGGCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGa                                                                                                                                                                                         <  1:141925/239‑1 (MQ=255)
                                   ttCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGaa                                                                                                                                                                                        >  2:209939/1‑238 (MQ=255)
                                     ccACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGAt                                                                                                                                                                                                                     >  1:926241/1‑207 (MQ=255)
                                     ccACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGAt                                                                                                                                                                                                                     <  2:926241/207‑1 (MQ=255)
                                           cTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTa                                                                                                                                                                                <  2:411103/238‑1 (MQ=255)
                                             gCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACg                                                                                                                                                                             >  1:278925/1‑239 (MQ=255)
                                                             aCGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGatat                                                                                                                                                                                                            >  1:71287/1‑192 (MQ=255)
                                                             aCGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGatat                                                                                                                                                                                                            <  2:71287/192‑1 (MQ=255)
                                                             aCGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAg                                                                                                                                                             >  2:855730/1‑239 (MQ=255)
                                                                                    tttCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATc                                                                                                                                      >  1:946710/1‑239 (MQ=255)
                                                                                       cACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCg                                                                                                                                     >  2:968640/1‑237 (MQ=255)
                                                                                       cACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCa                                                                                                                                   >  1:664246/1‑239 (MQ=255)
                                                                                       cACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCAATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGCTAACGATGCATAAGGCGTCAGGTTCCAGTTACCACCGGTTAATCGCa                                                                                                                                   >  2:1008716/1‑239 (MQ=255)
                                                                                         cccGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCAt                                                                                                                                  >  1:152971/1‑238 (MQ=255)
                                                                                                   atcGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCaa                                                                                                                       <  2:152971/239‑1 (MQ=255)
                                                                                                       aCAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGt                                                                                                                                                                                  >  1:640704/1‑176 (MQ=255)
                                                                                                       aCAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGt                                                                                                                                                                                  <  2:640704/176‑1 (MQ=255)
                                                                                                        cAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTCAATCGCATCCCGGTTTCAAtgtg                                                                                                                   >  2:259421/1‑238 (MQ=255)
                                                                                                           aTTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGAcc                                                                                                                >  2:376263/1‑238 (MQ=255)
                                                                                                                 tGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAAt                                                                                                                                                                                                                 <  1:339115/135‑1 (MQ=255)
                                                                                                                 tGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAAt                                                                                                                                                                                                                 >  2:339115/1‑135 (MQ=255)
                                                                                                                           cgccTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGc                                                                                                  <  1:516311/236‑1 (MQ=255)
                                                                                                                                                  ccATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGCCTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGGGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTcc                                                                         >  2:1181303/1‑238 (MQ=255)
                                                                                                                                                  ccATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCa                                                                        <  1:376263/239‑1 (MQ=255)
                                                                                                                                                    aTACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAAc                                                                                                                                                                                       <  2:149149/126‑1 (MQ=255)
                                                                                                                                                    aTACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAAc                                                                                                                                                                                       >  1:149149/1‑126 (MQ=255)
                                                                                                                                                    aTACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCg                                                                                                                                                                 <  1:955877/148‑1 (MQ=255)
                                                                                                                                                    aTACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCg                                                                                                                                                                 >  2:955877/1‑148 (MQ=255)
                                                                                                                                                    aTACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGcc                                                                                                             <  1:983840/200‑1 (MQ=255)
                                                                                                                                                    aTACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGcc                                                                                                             >  2:983840/1‑200 (MQ=255)
                                                                                                                                                    aTACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCAcc                                                                      >  1:330993/1‑239 (MQ=255)
                                                                                                                                                        cGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCgctg                                                                  <  1:209939/239‑1 (MQ=255)
                                                                                                                                                          ttCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCAt                                                                                                                                                                                                                          >  1:735574/1‑85 (MQ=255)
                                                                                                                                                          ttCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCAt                                                                                                                                                                                                                          <  2:735574/85‑1 (MQ=255)
                                                                                                                                                          ttCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCgctgc                                                                 >  2:838301/1‑238 (MQ=255)
                                                                                                                                                                    gCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGt                                                                                                                                           <  1:641155/154‑1 (MQ=255)
                                                                                                                                                                    gCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGt                                                                                                                                           >  2:641155/1‑154 (MQ=255)
                                                                                                                                                                       tgttgtAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCggg                                                                                                                                                                                                       >  2:175594/1‑91 (MQ=255)
                                                                                                                                                                       tgttgtAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCggg                                                                                                                                                                                                       <  1:175594/91‑1 (MQ=255)
                                                                                                                                                                       tgttgtAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCCCCACCCCTGCTCATTTTACCTTCt                                                  >  2:341320/1‑239 (MQ=255)
                                                                                                                                                                       tgttgtAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATCGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCt                                                  >  1:854935/1‑239 (MQ=255)
                                                                                                                                                                                  aGCGTTGCGCCCAGTTCACGATATATACTACGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTa                                                                                           >  2:338403/1‑188 (MQ=255)
                                                                                                                                                                                  aGCGTTGCGCCCAGTTCACGATATATACTACGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTa                                                                                           <  1:338403/188‑1 (MQ=255)
                                                                                                                                                                                   gCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTa                                      >  1:194609/1‑239 (MQ=255)
                                                                                                                                                                                    cGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACg                                               >  1:498954/1‑229 (MQ=255)
                                                                                                                                                                                    cGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACg                                               <  2:498954/229‑1 (MQ=255)
                                                                                                                                                                                    cGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGCTACTTTTaa                                     >  1:150660/1‑239 (MQ=255)
                                                                                                                                                                                      ttGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGtt                                             <  1:593580/229‑1 (MQ=255)
                                                                                                                                                                                      ttGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGtt                                             >  2:593580/1‑229 (MQ=255)
                                                                                                                                                                                         cgcCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAAc                                                                                                                                                                                       >  1:793890/1‑89 (MQ=255)
                                                                                                                                                                                         cgcCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAAc                                                                                                                                                                                       <  2:793890/89‑1 (MQ=255)
                                                                                                                                                                                         cgcCCAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTaaa                                    >  2:936452/1‑235 (MQ=255)
                                                                                                                                                                                            ccAGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTCCCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTc                             <  1:782016/239‑1 (MQ=255)
                                                                                                                                                                                              aGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAAt                                                                                                                                                                                                                 <  2:881418/58‑1 (MQ=255)
                                                                                                                                                                                              aGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAAt                                                                                                                                                                                                                 >  1:881418/1‑58 (MQ=255)
                                                                                                                                                                                              aGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTAcc                                                                                                                                                 <  2:928475/122‑1 (MQ=255)
                                                                                                                                                                                              aGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTAcc                                                                                                                                                 >  1:928475/1‑122 (MQ=255)
                                                                                                                                                                                              aGTTCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCa                            >  2:1137041/1‑238 (MQ=255)
                                                                                                                                                                                                 tCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAg                           <  2:330993/236‑1 (MQ=255)
                                                                                                                                                                                                 tCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAg                           <  2:514147/236‑1 (MQ=255)
                                                                                                                                                                                                 tCACGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCtt                        <  2:278925/239‑1 (MQ=255)
                                                                                                                                                                                                   aCGATATATACTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCa                      <  1:936452/239‑1 (MQ=255)
                                                                                                                                                                                                    cGATATATACTGCGGTTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAg                           <  1:345326/233‑1 (MQ=255)
                                                                                                                                                                                                     gATATATACTGCGGGTATCGACTGATTGCGATTTCa                                                                                                                                                                                                                                <  2:996726/36‑1 (MQ=255)
                                                                                                                                                                                                     gATATATACTGCGGGTATCGACTGATTGCGATTTCa                                                                                                                                                                                                                                >  1:996726/1‑36 (MQ=255)
                                                                                                                                                                                                        atataCTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGaca                 <  2:194609/239‑1 (MQ=255)
                                                                                                                                                                                                          ataCTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTa                                                                                                                                                                                >  2:287685/1‑79 (MQ=255)
                                                                                                                                                                                                          ataCTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTa                                                                                                                                                                                <  1:287685/79‑1 (MQ=255)
                                                                                                                                                                                                          ataCTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAg                                                                                                                                                      <  2:816726/105‑1 (MQ=255)
                                                                                                                                                                                                          ataCTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAg                                                                                                                                                      >  1:816726/1‑105 (MQ=255)
                                                                                                                                                                                                          ataCTGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTTCCCTGCACGTTACTTTTAAAACGGTTCCGCTTCACGACAcc               >  2:655794/1‑239 (MQ=255)
                                                                                                                                                                                                              tGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGACACCGTcc           <  1:135464/239‑1 (MQ=255)
                                                                                                                                                                                                              tGCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCCCCACCGCTGCCCATTTTACCTGCTACGTTACTTTTAAAACGGGTCAGCTTCCCcaca                 >  2:345326/1‑233 (MQ=255)
                                                                                                                                                                                                               gCGGGTATCGACTGATTGCGATTTCATGCCATTGGa                                                                                                                                                                                                                      <  1:203796/36‑1 (MQ=255)
                                                                                                                                                                                                               gCGGGTATCGACTGATTGCGATTTCATGCCATTGGa                                                                                                                                                                                                                      >  2:203796/1‑36 (MQ=255)
                                                                                                                                                                                                               gCGGGTATCGACTGATTGCGATTTCATGCCATTGGATaaa                                                                                                                                                                                                                  <  1:15688/40‑1 (MQ=255)
                                                                                                                                                                                                               gCGGGTATCGACTGATTGCGATTTCATGCCATTGGATaaa                                                                                                                                                                                                                  >  2:15688/1‑40 (MQ=255)
                                                                                                                                                                                                               gCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCa                                                                                                                                                <  2:719040/106‑1 (MQ=255)
                                                                                                                                                                                                               gCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCa                                                                                                                                                >  1:719040/1‑106 (MQ=255)
                                                                                                                                                                                                               gCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGACACCGTCCa          >  2:975037/1‑239 (MQ=255)
                                                                                                                                                                                                               gCGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGACACCGTCCa          >  1:977317/1‑239 (MQ=255)
                                                                                                                                                                                                                cGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGc                                                                                                  >  2:471478/1‑151 (MQ=255)
                                                                                                                                                                                                                cGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGc                                                                                                  <  1:471478/151‑1 (MQ=255)
                                                                                                                                                                                                                cGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAg                           <  1:673003/221‑1 (MQ=255)
                                                                                                                                                                                                                cGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAg                           >  2:673003/1‑221 (MQ=255)
                                                                                                                                                                                                                cGGGTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGACACCGTCCAg         >  1:432317/1‑239 (MQ=255)
                                                                                                                                                                                                                 gggTATCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGCTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCCGCTCATTTTACCTGCTACGTTACTTTTAAAACGGCTCAGACTCACGAAACCGTCCAGa        >  2:135464/1‑239 (MQ=255)
                                                                                                                                                                                                                     agcGACTGATTGCGATTTCATGCCAGTGGAAAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTGCTTTTAAAACGGTTCAGCTTCACGACACCGTCCATATAGa    <  2:138457/237‑1 (MQ=255)
                                                                                                                                                                                                                     aTCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAg                           >  2:272632/1‑216 (MQ=255)
                                                                                                                                                                                                                     aTCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAg                           <  1:272632/216‑1 (MQ=255)
                                                                                                                                                                                                                     aTCGACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGACACCGTCCAGATAGa    >  1:234577/1‑239 (MQ=255)
                                                                                                                                                                                                                        gACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATc                                                                                                                                 <  2:159745/112‑1 (MQ=255)
                                                                                                                                                                                                                        gACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATc                                                                                                                                 >  1:159745/1‑112 (MQ=255)
                                                                                                                                                                                                                        gACTGATTGCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGACACCGTCCAGATAGaaa  >  2:367327/1‑238 (MQ=255)
                                                                                                                                                                                                                                |                                                                                                                                                                                                                                      
ACTGCTGAATGAGGCTTTAATACCTGCCTGGTATATTCCACGTCTGCCCGACAAATAATTGACGAAATTACCGTCACTATTCACTTTCACCCGGTTATCATCGACAAATTCTTTGCGCACAGCCGCCTTCAGCCACGGCTCAACTTCCATACCGTTCCCCAGACGCATGTTGTAACTCAGCGTTGCGCCCAGTTCACGATATATACTGCGGGTATCGACTGATTTCGATTTCATGCCATTGGATAAATGATATTCGGGGTTATCAGCGGTGAACCCCGTTAACGATGCATACGGCGTCAGGTTCCAGTTACCATCGGTAAATCGCATCCCGGTTTCAATGTGACCGCCCAGCCCGTTGCTGTGGTAACTGCCATTGGCGGCTCCACCGCTGCTCATTTTACCTGCTACGTTACTTTTAAAACGGTTCAGCTTCACGACACCGTCCAGATAGAAA  >  NC_000913/2778239‑2778692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: