| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,406,402 | T→G | K80N (AAA→AAC) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,406,402 | 0 | T | G | 96.8% | 740.6 / 10.9 | 217 | K80N (AAA→AAC) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| Reads supporting (aligned to +/- strand): ref base T (2/5); new base G (104/106); total (106/111) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.78e-01 | |||||||||||
Only 100 of 217 total aligned reads displayed.
GTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAG > NC_000913/2406307‑2406497 | tCGGCAGATTCAGCTGAAGCACCGATAGTTGATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTgg < 1:3281830/100‑1 (MQ=255) cGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGGACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTggn < 1:4450215/100‑2 (MQ=255) cGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGc < 1:2303511/100‑1 (MQ=255) ggCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCg < 1:3293683/100‑1 (MQ=255) ggCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCg > 1:2946767/1‑100 (MQ=255) ggCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCg > 1:1434286/1‑100 (MQ=255) gATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAAc > 2:800123/1‑100 (MQ=255) aTTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAAcc > 1:728449/1‑100 (MQ=255) cATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAGCATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCaag < 1:1962133/100‑1 (MQ=255) aTCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCaaga > 2:2299479/1‑100 (MQ=255) aTCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCaaga > 1:3394815/1‑100 (MQ=255) aTCTGAAGCACCGATAGTTAATACGCCCTCAAGATTACTGAACATTAATGATGCGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCaaga < 2:2037304/100‑1 (MQ=255) cTGAAGCACCGATAGTTAATACGCCCTGAAGATTATTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCaagaag < 2:5425996/100‑1 (MQ=255) cTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCaagaag > 2:5049704/1‑100 (MQ=255) cTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCaagaag < 1:1937191/100‑1 (MQ=255) tGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGt > 2:1226679/1‑100 (MQ=255) gAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGtt > 2:3257879/1‑100 (MQ=255) aaGCAGCGATAGTTAATACGCCCTGAAGATTACTGAAGAATAAGGATGAGAAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTg < 2:3971619/100‑1 (MQ=255) aaGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAACCGCAGGATGTTCCTGGCGTAACCAAGAAGTTg < 2:4953770/100‑1 (MQ=255) aaGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTg < 2:4010506/100‑1 (MQ=255) aGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGa > 1:563010/1‑100 (MQ=255) aGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGa > 2:844544/1‑100 (MQ=255) aGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGa < 1:4964859/100‑1 (MQ=255) cACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAAt < 2:4830603/100‑1 (MQ=255) aCCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATg < 2:4272707/100‑1 (MQ=255) aCCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATg > 1:1853997/1‑100 (MQ=255) ccGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAAtag > 2:4572601/1‑98 (MQ=255) ccGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGc > 2:3894021/1‑100 (MQ=255) ccGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGc < 1:2110267/100‑1 (MQ=255) ccGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGc < 1:4028503/100‑1 (MQ=255) ccGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCACCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGc > 1:623275/1‑100 (MQ=255) gATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCa > 2:4752193/1‑100 (MQ=255) gATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCa < 1:1033523/100‑1 (MQ=255) gATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCa < 1:3918289/100‑1 (MQ=255) tAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATg < 2:4809881/100‑1 (MQ=255) aGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGt > 2:2466767/1‑100 (MQ=255) aGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGt > 2:1429159/1‑100 (MQ=255) gTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGtt > 1:2992735/1‑100 (MQ=255) tAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCa > 2:2601712/1‑100 (MQ=255) gatctgCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAg < 2:196647/95‑1 (MQ=255) aaTACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAg > 1:1693254/1‑100 (MQ=255) aaTACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAg < 1:1000461/100‑1 (MQ=255) aTACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGt < 1:4262952/100‑1 (MQ=255) aTACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGt < 2:4084869/100‑1 (MQ=255) tACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGtt < 2:3146846/100‑1 (MQ=255) tACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGtt > 1:2515898/1‑100 (MQ=255) tACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGtt > 1:652087/1‑100 (MQ=255) aCGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTa < 1:940340/100‑1 (MQ=255) gCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAgagatc > 1:198556/1‑95 (MQ=255) gCCCTGAAGAATACTGAACATTAATGATGAGCAGGACTCATCATTATAACGCAGGTTGTTCCGGGCGTAACCAAGAAGTTGATTGCCATGTTTAGTTAAc < 2:3609127/100‑1 (MQ=255) cccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACa < 2:3482005/100‑1 (MQ=255) ccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAg > 2:5390854/1‑100 (MQ=255) ccTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAg > 2:139149/1‑100 (MQ=255) cTGAAGATTACTGAACATTCATGATGAGCAGGCCTCATCATTCAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGt > 1:4745129/1‑100 (MQ=255) aaGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTttg < 1:810604/100‑1 (MQ=255) gATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTttgtt < 1:2245495/100‑1 (MQ=255) aTTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTttgttg < 1:3873103/100‑1 (MQ=255) aTTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTttgttg < 1:4639038/100‑1 (MQ=255) ttACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGc < 2:3363293/100‑1 (MQ=255) aCTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAAAAGTTTGTTGCGa > 2:1449010/1‑100 (MQ=255) gAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCg > 1:5420952/1‑100 (MQ=255) gAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCg > 1:5347045/1‑100 (MQ=255) aCATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTg < 1:4008487/100‑1 (MQ=255) ttttAATGATGAGGCCTGCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGCTGAATGCCATGATCAGTTAACAGTTTGTTGCGACCGTGa > 2:2990655/3‑100 (MQ=37) cATTAATGATGAGCAGGCCTCATCATTCAAACGAAGGATGTTCCTGGCGTAACCTATGCGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGa > 2:5484161/1‑100 (MQ=255) aTTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGAc > 2:1274563/1‑100 (MQ=255) aaTGATGAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAg < 1:504446/100‑1 (MQ=255) atgatgAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGc < 1:280947/100‑1 (MQ=255) atgatgAGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGc < 1:2790054/100‑1 (MQ=255) tgatgaGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCg < 1:3288427/100‑1 (MQ=255) gatgaGCAGGCCTCAACATTAAAACGCAGGCTGTTCCTGGCGTAAGCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGa > 1:4842537/1‑100 (MQ=255) atgaGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGAGACCGTGACGAGCGaa > 1:4577671/1‑100 (MQ=255) tgaGCAGGCGGCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAAc < 2:1677964/100‑1 (MQ=255) tgaGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAAc < 1:855767/100‑1 (MQ=255) aGCAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAg < 1:1386546/100‑1 (MQ=255) cAGGCCTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGtt > 1:3264804/1‑100 (MQ=255) gCCTCATCATTAAAACGCAGGATGTTCCTTGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGTGAACAGTTCtt > 2:1534719/1‑100 (MQ=255) ccTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCttt < 2:1166598/100‑1 (MQ=255) ccTCATCATTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGATCAGTTAACAGGTTGTTGCGACCGTGACGAGCGAACAGTTCttt > 1:5106655/1‑100 (MQ=255) cccatcatTAAAACGCAGGATGTTCCTGGCGTAATCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTc < 2:3274859/98‑1 (MQ=255) atcatTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCa < 1:3181353/100‑1 (MQ=255) atcatTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCa > 1:2223019/1‑100 (MQ=255) tcatTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCaa > 1:2895688/1‑100 (MQ=255) atTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACg > 1:3667576/1‑100 (MQ=255) atTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACg < 2:3800230/100‑1 (MQ=255) atTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACg < 2:3081328/100‑1 (MQ=255) atTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGGGACGAGCGAACGGTTCTTTCCCAACg > 1:2527431/1‑100 (MQ=255) atTAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCACCCGTGACGAGCGAACACTTCTTTCCCAACg > 2:4306991/1‑100 (MQ=255) tAAAACGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAg < 1:1170326/100‑1 (MQ=255) aaaaCGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgt < 2:3691647/100‑1 (MQ=255) aaaaCGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgt > 1:523380/1‑100 (MQ=255) aaaaCGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgt < 1:1291621/100‑1 (MQ=255) aaCGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgttg > 2:2909964/1‑100 (MQ=255) aCGCAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgttgt < 2:1604606/100‑1 (MQ=255) aCGCAGGATGTTCCTGGCGTAACCAAGAAGCTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAgttgt < 1:830481/100‑1 (MQ=255) cAGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTcc < 2:186096/100‑1 (MQ=255) aGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCa < 1:2461387/100‑1 (MQ=255) aGGATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCa > 2:4768765/1‑100 (MQ=255) ggATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAg > 1:308749/1‑100 (MQ=255) ggATGTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAg > 1:3805551/1‑100 (MQ=255) | GTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGCCTCATCATTAAAACGCAGGATTTTCCTGGCGTAACCAAGAAGTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAG > NC_000913/2406307‑2406497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |