New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1125266	71 (0.790)	11 (0.130)	9/402	5.6	11.2%	coding (61/1209 nt)	mdtH	multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin
	?	NC_000913	= 1125612	107 (1.250)					coding (51/585 nt)	rimJ	ribosomal‑protein‑S5‑alanine N‑acetyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGATACCCATTGTGGCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTT  >  NC_000913/1125041‑1125501                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                             cGATACCCATTGTGGCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATg                                                                                                                                                                                                                                >  2:422577/1‑239 (MQ=255)   aTACCCATTGTGGCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGa                                                                                                                                                                                                                               >  1:286611/1‑238 (MQ=255)   aTACCCATTGTGGCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGa                                                                                                                                                                                                                               >  1:31880/1‑238 (MQ=255)   aTACCCATTGTGGCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGAAAACAAAAAACCCCAGCACGACCAGCATAT‑TATCGATGa                                                                                                                                                                                                                               >  1:361140/1‑238 (MQ=255)    tACCCATTGTGGCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAg                                                                                                                                                                                                                              <  1:342409/238‑1 (MQ=255)        cATTGTGGCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGa                                                                                                                                                                                                                         <  2:31880/239‑1 (MQ=255)              ggCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAatat                                                                                                                                                                                                                    <  1:533638/238‑1 (MQ=255)                  aaTCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCCCGACCAGCATAT‑TATCGATTAGCAGGAAATATTTAc                                                                                                                                                                                                                >  2:700661/1‑238 (MQ=255)                                           cGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCgg                                                                                                                                                                                      >  2:864974/1‑239 (MQ=255)                                               aaCAAGCATCGGTTTGGACCCAAGGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGAc                                                                                                                                                                                   <  2:139239/238‑1 (MQ=255)                                                aCAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGa                                                                                                                                                                                                                         >  2:147582/1‑199 (MQ=255)                                                aCAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGa                                                                                                                                                                                                                         <  1:147582/199‑1 (MQ=255)                                                     catcGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTg                                                                                                                                                                                                >  2:1002208/1‑219 (MQ=255)                                                     catcGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTcc                                                                                                                                                                             >  1:499655/1‑238 (MQ=255)                                                     catcGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGATTCCTCGCCTg                                                                                                                                                                                                <  1:1002208/219‑1 (MQ=255)                                                       tcGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTcccc                                                                                                                                                                           >  1:472559/1‑238 (MQ=255)                                                        cGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCt                                                                                                                                                                          >  1:792531/1‑238 (MQ=255)                                                                cACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGaaa                                                                                                                                                                 >  1:878784/1‑239 (MQ=255)                                                                     aaGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGTGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATaaaa                                                                                                                                                            >  2:71561/1‑239 (MQ=255)                                                                          gTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGTCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGTTCAACGAAGCGGATAGAGATCAGTGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCTTCCCGGGCAATAAAAGATGa                                                                                                                                                       >  1:938430/1‑239 (MQ=255)                                                                           tCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGAt                                                                                                                                                                                                                                 >  2:128485/1‑164 (MQ=255)                                                                           tCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGAt                                                                                                                                                                                                                                 <  1:128485/164‑1 (MQ=255)                                                                           tCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGa                                                                                                                                                       <  2:878784/238‑1 (MQ=255)                                                                            cGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGc                                                                                                                                                     <  1:422577/239‑1 (MQ=255)                                                                             ggCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTACCCCTCCCGGGAAATAAAAGATGAGc                                                                                                                                                     <  2:60419/238‑1 (MQ=255)                                                                                         gccgAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGc                                                                                                                                                     >  1:432817/1‑226 (MQ=255)                                                                                              aaaTACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCAtt                                                                                                                                    <  2:48732/238‑1 (MQ=255)                                                                                                        aCCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAg                                                                                                                           >  2:525732/1‑237 (MQ=255)                                                                                                            tGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACttt                                                                                                                      >  1:627243/1‑238 (MQ=255)                                                                                                            tGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACttt                                                                                                                      >  1:555151/1‑238 (MQ=255)                                                                                                            tGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACttt                                                                                                                      >  1:951712/1‑238 (MQ=255)                                                                                                                        tGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAgg                                                                                                                                                                                                                          <  1:890904/126‑1 (MQ=255)                                                                                                                        tGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAgg                                                                                                                                                                                                                          >  2:890904/1‑126 (MQ=255)                                                                                                                           cGTAGACCGAGTGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACt                                                                                                                                                  >  1:994245/1‑195 (MQ=255)                                                                                                                           cGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACt                                                                                                                                                  <  2:994245/195‑1 (MQ=255)                                                                                                                           cGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCgggg                                                                                                      >  1:95389/1‑239 (MQ=255)                                                                                                                           cGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCgggg                                                                                                      >  2:187591/1‑239 (MQ=255)                                                                                                                                aCCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAat                                                                                                 >  2:1027102/1‑239 (MQ=255)                                                                                                                                    agagCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCTGCTAAGACTTTTCCCATTACTTCGGGGATAATAttt                                                                                             >  2:133323/1‑239 (MQ=255)                                                                                                                                    agagCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATAttt                                                                                             >  2:795511/1‑239 (MQ=255)                                                                                                                                        cAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATAttttttt                                                                                         >  2:622502/1‑239 (MQ=255)                                                                                                                                          aTACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTa                                                                                        >  1:656520/1‑238 (MQ=255)                                                                                                                                           tACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGCTATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAGTATTTTTTTATc                                                                                      >  2:456570/1‑239 (MQ=255)                                                                                                                                                aCCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATCT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAAc                                                                                 >  2:208483/1‑239 (MQ=255)                                                                                                                                                aCCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCa                                                                                                                                                    <  2:677229/172‑1 (MQ=255)                                                                                                                                                aCCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCa                                                                                                                                                    >  1:677229/1‑172 (MQ=255)                                                                                                                                                  caagACGGCGGCCGAACGCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGGCCAGCATAG‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGAGACGCGGGACATTTCCCCTCCCGGGa                                                                                                                                                                   <  2:390728/152‑1 (MQ=255)                                                                                                                                                  cATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGt                                                                               <  2:951712/239‑1 (MQ=255)                                                                                                                                                          cggcCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGa                                                                                                                                                                   <  2:707073/147‑1 (MQ=255)                                                                                                                                                          cggcCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGa                                                                                                                                                                   >  1:707073/1‑147 (MQ=255)                                                                                                                                                            gcccagcccaTTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGAt                                                                                                                                                         >  1:390728/1‑155 (MQ=255)                                                                                                                                                              ccagcccaTTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATaga                                                                   <  2:857407/239‑1 (MQ=255)                                                                                                                                                              ccagcccaTTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATaga                                                                   <  1:864974/239‑1 (MQ=255)                                                                                                                                                                           tCAACGAGGCGGAGAGAGATCAGCGGGAAGACAACAAAGAACCCCCGCACGACCAGCATATGTAT‑GAGGAGCAGGAAATAGTTACCTAGCTTCCCGTCCGGCGGAACGCGGGAGATTTCCCCGCCCGGGAAATAAAAGATGAGCACTTTCTATTGTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATAGTTTGTTAACAAAACGTCGCTTTGATAGAGAGGTTTTATCa                                                       <  2:361140/238‑1 (MQ=255)                                                                                                                                                                                     ggATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaa                                             <  2:555151/238‑1 (MQ=255)                                                                                                                                                                                       aTAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaata                                           <  1:187591/238‑1 (MQ=255)                                                                                                                                                                                       aTAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaata                                           <  2:627243/238‑1 (MQ=255)                                                                                                                                                                                       aTAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaata                                           <  2:656520/238‑1 (MQ=255)                                                                                                                                                                                         agagATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATg                                        <  1:1027102/239‑1 (MQ=255)                                                                                                                                                                                             aTCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGa                                    >  1:496255/1‑239 (MQ=255)                                                                                                                                                                                                aGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAg                                                                                                                                                      >  2:345852/1‑122 (MQ=255)                                                                                                                                                                                                aGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAg                                                                                                                                                      <  1:345852/122‑1 (MQ=255)                                                                                                                                                                                                     gAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCa                            >  1:865409/1‑239 (MQ=255)                                                                                                                                                                                                           aacaaAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTgg                      >  2:157263/1‑239 (MQ=255)                                                                                                                                                                                                             caaAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCa                                                       <  2:843105/204‑1 (MQ=255)                                                                                                                                                                                                             caaAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCa                                                       >  1:843105/1‑204 (MQ=255)                                                                                                                                                                                                                     cccAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTcaca            <  1:208483/239‑1 (MQ=255)                                                                                                                                                                                                                       cAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTCCCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaat                                            <  2:298466/205‑1 (MQ=255)                                                                                                                                                                                                                       cAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGaat                                            >  1:298466/1‑205 (MQ=255)                                                                                                                                                                                                                        aGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAggg         >  2:164093/1‑239 (MQ=255)                                                                                                                                                                                                                               ccAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGtt  >  1:437084/1‑239 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                             CGATACCCATTGTGGCGAATCCGGCGGCGCGCATCAGCATACCGGTAACAATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTAGACCGAGAGCAATACCGACCATGACGGCGGCCCAGCCCATTTGATCAACGAAGCGGATAGAGATCAGCGGGAAGACAACAAAGAACCCCAGCACGACCAGCATAT‑TATCGATGAGCAGGAAATATTTACCCAGGTTCCTCGCCTGCGACACGCGGGACATTTCCCCTCCCGGGAAATAAAAGATGAGCACTTTCTATTCTGCATTGCCGCTAAGACTTTTCCCATCACTTCGGGGACAATATTTTTTTATCAAAACGTCGCTTTGATAGAGAGTTTTTATCAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTT  >  NC_000913/1125041‑1125501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.