| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 433,649 | 0 | T | G | 33.9% | 56.5 / 14.2 | 61 | G65G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| Reads supporting (aligned to +/- strand): ref base T (8/31); new base G (17/3); total (26/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.91e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.16e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAGGCTTTCTCAAGCGGATGC > NC_000913/433415‑433881 | cgAATTTGGGAAAGAACCCGCGCCCCTGGAGGCCTAAGCCGTGCAGGACGAGTTTTACAGGGCGCGGGCCCTAAAGCTGGCGCACCGAGACCGTTTTCCCCCGCACCCCAACCCAAATGTCGGGTGCGTCATTGTAAAAGAGGGCAAAATTGTGGGTA‑AAGG‑TTCCCCCCACCGGGCGGTTGAACCACATGCCGAAGTACACGCGTTGCGTATGGGGG‑GT‑GAAAAAGCCAAAGGTGGGa < 2:673891/238‑1 (MQ=255) aTTTGGGGAAGAGATCGCGCGCGTGGAGGACTAAGCGGTGAAGGACGAGTATTAAAGGGCGCGGGCGCAAAAGCGGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTAATTGTCAAAGAGGGCAAAATTGTCGGTG‑AGGG‑TTCCCACCAGCGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GAAAAAGCCAAAGGTGCGAcc < 2:207713/238‑1 (MQ=255) aTTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGAcc < 1:242430/238‑1 (MQ=255) cgcgcgCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACAAGCCGAAGTACACGCGTTGCGTATGGCGGCGG‑GAAAAAGCCAAACGGGGGCCGCCCTCTGTCacacca > 2:115133/1‑237 (MQ=255) tGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GCAAAAGCCCAAGGTGCGACCCCCTCTTTCccaccccaaacccgt > 1:30787/1‑228 (MQ=255) gaggaCTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTa < 1:771060/238‑1 (MQ=255) gaCTAGGCCGTGCAGGACGAGTATTCCATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAAcc < 1:423233/230‑1 (MQ=255) cTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GAAAAAGGCAAAGGTGGGACCCCCTATGTTACAACCGAACCCTGTAGCcact > 1:328639/1‑237 (MQ=255) aaGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GGAAAAACCAAAGGTGCGAGCGCCTATGTCACACTCGAACCCTCTAGCcat > 1:647077/1‑236 (MQ=255) ccGTGCAGGACGATTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTa < 1:191359/228‑1 (MQ=255) cGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTGCCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTAGGGGGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 1:99582/238‑1 (MQ=255) cGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GAGAAAACCGAAAGGGGGGCCGCCTACGTCACAATGCACCCCAGTATCCACCATgg > 2:191359/1‑228 (MQ=255) gTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GGAAAAACCAAAGGGGGGACCGCCCATGTTACACTCGAACCCCGTAGCCATCATGGGCGGACGcccc > 2:904541/1‑234 (MQ=255) gTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GAAAAAACCAAAGGGGCGACCGCCTATGTCACACTCCAACCCTGTAGCCATCATGGTCGTACCCCACCGt > 1:746851/1‑239 (MQ=255) aTTCCATGGCGGGGGCGCAAAGGCGGGCGCAGGGAGACCGTTTTACCACGCATCCCAACCCGAGTGTCGGGTGCGGAATTGTAAAAGAGGGCGAAAGTGGCGGGG‑AAGG‑TTGCCCCCAACGTGCGGGTGAACCACATGCCGAAGTACCCGCGTTGCGTATGGCGG‑GT‑AAAAAAGCCAAGGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTg < 2:328639/238‑1 (MQ=255) cgcgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAAGGGCGACCGCCTATGTCACACTCCAACCCTGTAGCCCTCGTGGTCGTAccccc > 1:246869/1‑223 (MQ=255) cgGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAGCCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAAGGGAGAACGCCTATGTCACACTCCAAACCCGTAGACATCAAGGGCGTAAGCCACCGGGCTGTGACGCAc > 1:443496/1‑238 (MQ=255) gcTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGt < 1:254217/180‑1 (MQ=255) cTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAAGGGCGACCCCCTATGTCCCACTCGAACCCTGTAACCATCATGGTCGTACGCCACCCGGCTGTGACGCCCACATcg > 1:328916/1‑238 (MQ=255) gcgcAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GGAAAAAACAAAAGGGGGACCGCCTCTGTTACACCCGaa > 2:254217/1‑180 (MQ=255) cGAGGACGTTTTACCACGCATCCAACCCCGAATGTCGGGTGCGGCATGGAAAAAGAGGGCAAAATTGTCGGTG‑AAGG‑TTACCCCCAACGGGCGGGTAAACCACAGGCCGAAGTACCCGCGTTGCGTATGGCGG‑GT‑AAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTg < 2:427909/206‑1 (MQ=255) aCGTTTTACCACGCACCCCAACCCGAATGTCGGGTGCGTCATTTTAAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCCCCAACGTGCGGGTGAACCACAGGCCGAAGTACACGCTTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCt < 2:898331/155‑1 (MQ=255) gTTTTACCACCAATCCCAACCCGAAGGACGGGTGCGTCATTGTAAAAGAGGGCAAAATTGGCGG‑G‑AAGGTTTACCCCCAAGGTGCGGGTGAACCACATGCCGAAGTACCCGCGTGGCGTAGGGCGG‑GT‑GAAAAAGCAAAGGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTg < 2:158309/199‑1 (MQ=255) tACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCt < 1:241038/239‑1 (MQ=255) aCGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACt > 1:898331/1‑155 (MQ=255) gCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCa > 1:158309/1‑199 (MQ=255) cATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCa < 1:904541/239‑1 (MQ=255) gcccAACCCGAATGTCGGGGGCGTCATTGTCAAAGAGGGCGAAATTGTCGGTG‑AGGG‑TTACCGCCAACGTGCGGGTGACCCACATGCGGAAGTACACGCGTGGCGTATGGCGG‑GT‑GAAAAACCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCa < 2:211909/180‑1 (MQ=255) aCCCGAAGGGCGGGTGGGTAAGTGGAAAAGATGGCGAAATTGTGTGGG‑AAGG‑TTACCACGAACGGGCGGGTAAACCCCGAGCCGAAGTACACGCGTTGCGTAGGGCGG‑GT‑GAAAAAGCAAAGGGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCt < 2:918443/239‑1 (MQ=255) gAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGGGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCCCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAAc > 1:879487/1‑238 (MQ=255) aaTGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGGGCGACCGCCCATGTCACACTCGAACCCTGTAGCCATCATGGTTGTACGCCACCCTGccttg > 1:211909/1‑177 (MQ=255) cATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑AAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGc < 1:483489/239‑1 (MQ=255) atttGTAAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGGGCGGGTGACCCACATGCCGAAGTACACGCTTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTca < 1:426580/120‑1 (MQ=255) ttgtaaagaaTGGCAAATTTGTCGGTG‑AAGG‑TTACCGCCAACGTGCGGGTGAACCACATGCCAAAGTACGCGCTTTACGTATGGCGG‑GT‑AAAAAAGCAAAAGTTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑t < 2:443496/230‑1 (MQ=255) ttGACAAAG‑TGGGGAAATTGGGGGGGAAAGT‑TTCCCCCCAGCGTGCGGGGAAACCACATGCCAAAGTCCCCGCGTTGCGTAGGGGGG‑GG‑AAAAAAGCCAAAGGTGCGCCCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑t < 2:950828/239‑1 (MQ=255) gtgtgAAAGATGGCGAAATGGTCGGTG‑AAGG‑TTACCCCCAACGGGGGGGGAACCCACAGGCGGAAGTACCCGGGTTGCGTATGGCGG‑GT‑AAAAAAGCCAAAGTTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑t < 2:394412/238‑1 (MQ=255) gATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GAAAAAGCCAAAAGCGCGAACGCCCATGTTCCCCTCGAAcc > 2:426580/1‑122 (MQ=255) tGGCGAAATTGTCGGTG‑AAGG‑TTACCCCCAACGTGCGGGTGAACCACATGCCGAAGTACCCGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTa < 1:514804/237‑1 (MQ=255) ggCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCAAACTCGAACCCTGTAGCCATCATGGTCGTACGCCCCCGTGGTGTGACGCACTCCTCCCCCCTGGCGGAGCGCGCGTGGTTGCCTCGATGGAAGATCCTAAACCGCAGGGCGCTGGGCGCTGGCCtttcc > 2:257899/1‑236 (MQ=255) ggCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GAAAAAACCAAAAGTGCGACCGCCTATGTTCCACTCGAACCCTGTAGCCCTCATGGTGCTAAGCCACCCGGCTGTGACCCACTCATCCCCCCTGGCGTAGGCCGCGTGGTTGCCCCGCGTCAAAATCCTAACCCCCCGGGCGCCGGGCG‑Cgggcctttac > 2:1017029/1‑230 (MQ=255) gCGAAATGGTCGGTG‑AAGG‑TTCCCACCAACGGGCGGGTGAACCACATGCCGAAGTACACGCGTTGCTAATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTATGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTa < 1:868472/235‑1 (MQ=255) cGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAAACAAAGGGGTGATCCCCTATGTTACACCCCAAGCCTGTAACCATCCCGGTCCCATGCCCACGGGCTGTGTCGCACTCATCGCCGCTGGCGCAGCCCGCGGGGTTGCCTCCCTGCTAGATCCCAAACCGCGGGTCGACGGGccggggcgtt > 2:776765/1‑224 (MQ=255) cGGTG‑AGGG‑TTCCCCCCAAGGGGGGGGTAACCCACACGCCGAAGTACCCGCGTTGCGTGTGGGGG‑GT‑GAAAAAGCCAAAGGTGCGCCCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAgg < 2:746851/239‑1 (MQ=255) ggTG‑AAGG‑TTCCCCCAAACGTGGGGGTAAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAACCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAgg < 1:888164/238‑1 (MQ=255) ggTA‑AAGG‑TTACCACCAACGTGGGGGTGAACCACATGCCGAAGTACCCGCGTTGCGTATGGGGG‑GT‑AAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAgg < 1:645425/238‑1 (MQ=255) gtaaaGG‑TTACCCCCAACGTGCGGGTGACCCCCATGCCGAGTTACACGCGTTGCATATGGCGG‑GT‑AAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGc < 1:776765/235‑1 (MQ=255) accaccAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GGAAAAGCCAAAGGTGCGACCGCCTCTGTCACACTCGAACCCCGTAGCCATCCTGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCCGGTCGCTGGGCG‑GGGGCTTTACCCTCTGCCACAGGCCGGGAtttg > 2:239071/1‑236 (MQ=255) accaccAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GG‑GAAAAAACCAAAGGGGCGACCGCCCATTTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCCCCGCCGGCGTAGCGCGCGGGGGTGCCTCGATGCAAGAACCTAACCCCCAGGGCGCCGGGGG‑GGGGCGTTTCCGTCGGCAAAAGGCTGGc > 2:969789/1‑233 (MQ=255) cGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑AAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCa < 1:969789/239‑1 (MQ=255) gTGCGGGTGACCCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑t < 1:560627/197‑1 (MQ=255) gCGGGTGAACCACATGCCGAAGTACCCGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACg < 1:345694/238‑1 (MQ=255) ggggaaaCCACGTGCCAAAGTACGCGGGGTGCGT‑TGGGGG‑ATAAAAAAAGCCAAAGGGGCGCCCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGc < 2:328916/233‑1 (MQ=255) gcgAACCACATGCCAAAGGACACG‑GTTGTGGATGGGGGCGA‑AAAAAAGCCAAGGGGGCGCCCGCCTAGGTCACACGCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACg < 2:647077/232‑1 (MQ=255) ccACGTGCCGAAGTACACGCGTGGCGTATGGCGG‑GG‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑t < 2:108322/186‑1 (MQ=255) ccACATGCCGAAGTACACGAGTGGCGGATGGGGG‑GT‑GAAAAGCCAAAAGGTGCCGCCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCa < 1:481890/227‑1 (MQ=255) cGAAGTACACGCGTTGCGTATGGCGG‑GG‑GAAAAAACCAAAGGGGCGACCCCCCATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGGGCTGTGACGCACCCCTCCCCGCTGGGGTAGCGCGCGGGGGTGCCCCCGTGCAAGAACCTAAACCCCCGGGCGCCGGGGG‑GGGGCTTTACCGTCTGCAACAAGCTGGGATTGGCGGCCGCCACGGCCTGTTGTTGAGTGaa > 2:909852/1‑238 (MQ=255) aaGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGGGCGACCGCCTATTTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTAcc > 1:108322/1‑186 (MQ=255) aaGTACACGCGTTGCGTATGGCGG‑GG‑GAAAAAGCCAAAGGGGCGAACGCCCATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCCCTGGCGGAGCGCGCGGGGGTGCCTCGCTGCAAGGTCCTAACCCCCAGGTCGCTGGGCG‑GGGGCTTTCCCGTCTGCAACAGGCCGGCCTTGACGGCAGCCACGGcccggtt > 2:481890/1‑222 (MQ=255) cGTATGGGGG‑GT‑AAAAAACCAAAGGGCGCGCCCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATa < 2:879487/238‑1 (MQ=255) ggCGG‑GG‑GAAAAAACCAAAGGGGCGACCCCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCCTCGCCGCTGGCGGAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGGCGCTGGGCG‑GGGACTTTACCGTCTGCAACAGGATGGGATTGACGTCAGCCCCGGCCTGGTGGTGGGGGAAGCCGGGCAATTTAATAAAgg > 2:960254/1‑237 (MQ=255) cAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAGGCTTTCTCAAGCGGATgc > 1:418446/1‑239 (MQ=255) | AGAATTTGGCGAAGAGATCGCGCGCCTGGAGGACTAAGCCGTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGTCGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTG‑AAGG‑TTACCACCAACGTGCGGGTGAACCACATGCCGAAGTACACGCGTTGCGTATGGCGG‑GT‑GAAAAAGCCAAAGGTGCGACCGCCTATGTCACACTCGAACCCTGTAGCCATCATGGTCGTACGCCACCGTGCTGTGACGCACTCATCGCCGCTGGCGTAGCGCGCGTGGTTGCCTCGATGCAAGATCCTAACCCGCAGGTCGCTGGGCG‑TGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGCCTGATGATGAGTGAAGCCGAGCAATTGAATAAAGGCTTTCTCAAGCGGATGC > NC_000913/433415‑433881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |