New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3182319 =	31 (1.690)	3 (0.170)	3/366	NT	10.0%	coding (89/789 nt)	ygiD	4,5‑ DOPA‑extradiol‑dioxygenase
	?	NC_000913	3182392 =	24 (1.360)					coding (16/789 nt)	ygiD	4,5‑ DOPA‑extradiol‑dioxygenase

CCCAGGCTTCTTTATCCAGCGTCACCGGGATCGGCGCTAACAGCTCAACCAGACGCTGTGCCAGCGCAGGCGAACCCGGAGCAGGATAATGCGTATCGTACAGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGATAACAATGATGATGATCATCAGTTATTTTGACGATCTGCCTGAAGGTGAAGATTTATAAGGAG  >  NC_000913/3182083‑3182543                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                 tttgcccgagaacgccgagaaacgcgccaataaacgtggctgcccccgccagtatggtcagaatgagaggtactgacatcgacaactccttataaatcttcaccttcaggcagatcgtcaaaataactgatgatcatcatcattgttatccgggttcttactccgccgaacaagcggattgtgaggatatcaaaatgacacctttagttaaggatatcatcatgtcttcaacacgtat                                                                                                                                                                                                                                  <  2:59535‑M1/1‑1 (MQ=255)        ttcttTATCCAGCGTCACCGGAATCGGCGCTAACAGCTCAACCAGACGCTGGGCCAGCGCAGGCGACCCCGGAGCAGGATAATGCGTATCGTACAGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGc                                                                                                                                                                                                                         <  2:54035/239‑1 (MQ=255)                    cGTCACCGGGATCGGCGCTAACAGCTCAACCAGACGCTGTGCCAGCGCAGGCGAACCCGGAGCAGGATAATGCGTATCGTACAGCGCCTGCGGGAAGCCCCCAAAGTCATGAACCGTGGGCGGCGTCTCCATCCCGGTCA‑CTCCTGTTCCCCGGGTAAACCAGTGAGCCGAAACCCCCACAATCGCTTGCGGGCGTGCCAATGTCATCCCCACCTTCTGCAAGCTGCGGGTATACAAAt                                                                                                                                                                                                             >  1:94093/1‑239 (MQ=255)                    cGTCACCGGGATCGGCGCTAACAGCTCAACCAGACGCTGTGCCAGCGCAGGCGAACCCGGAGCAGGATAATGCGTATCGTACAGCGCCTGCGGGAAGCCACCAAAGTCATGACTCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAAACACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAAt                                                                                                                                                                                                             >  2:193325/1‑239 (MQ=255)                     gTCACCGGGATCGGCGCTAACAGCTCAACCAGACGCTGTGCCAGCGCAGGCGAACCCGGAGCAGGATAATGCGTATCGTACAGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAAtt                                                                                                                                                                                                            >  1:230108/1‑239 (MQ=255)                                       aaCAGCTCAACCAGACGCTGTGCCAGCGCAGGCGAACCCGGAGCAGGATAATGCGTATCGTACAGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGGCTCCAAATTATCTTTCAGAACGTTcc                                                                                                                                                                                           >  2:143239/1‑237 (MQ=255)                                                      cGCTGTGCCAGGCCAGGCGAACCCGGAGCAGGATAATGCGTATCGATCAGCGAATGGGGGAAGCCCCCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGt                                                                                                                                                                               <  2:230108/235‑1 (MQ=255)                                                       tggtcagaatgagaggtactgacatcgacaactccttataaatcttcaccttcaggcagatcgtcaaaataactgatgatcatcatcattgttatccgggttcttactccgccgaacaagcgtattgtgaggatatcaaaatgacacctttagttaaggatatcatcatgtcttcaacacgtaGGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGAcc                                                                                                                                                                           >  1:216691‑M1/184‑239 (MQ=255)                                                           tgCCAGCGCAGGCGAACCCGGAGCAGGATAATGCGTATCGTACAGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCCCGTTCATCGGCCTCCCGTGACCTaaca                                                                                                                                                                      >  1:110883/1‑237 (MQ=255)                                                                                       tAATGCGTATCGTACAGCCGCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCTTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACa                                                                                                                                           <  2:94093/238‑1 (MQ=255)                                                                                          tGCGTATCGTACAGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACatgat                                                                                                                                       >  1:59535/1‑239 (MQ=255)                                                                                                      aGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGaa                                                                                                                                               <  1:219406/219‑1 (MQ=255)                                                                                                      aGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGaa                                                                                                                                               >  2:219406/1‑219 (MQ=255)                                                                                                             gCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGCATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAgga                                                                                                                    >  1:173663/1‑238 (MQ=255)                                                                                                                               cATGAACGGTGGGCAGTGTCTCAATC‑CCGTCAGCTCAGTTTCCACGGCTAAACCAGTGACCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCt                                                                                                    <  2:173663/237‑1 (MQ=255)                                                                                                                                        tGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGt                                                                                                                                                                               <  1:133701/153‑1 (MQ=255)                                                                                                                                        tGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGt                                                                                                                                                                               >  2:133701/1‑153 (MQ=255)                                                                                                                                        tGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACaa                                                                                               <  1:206760/233‑1 (MQ=255)                                                                                                                                        tGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACaa                                                                                               >  2:206760/1‑233 (MQ=255)                                                                                                                                                 tctcCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCAACGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTcggcg                                                                                >  1:199454/1‑239 (MQ=255)                                                                                                                                                              cA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCg                                                                   <  1:193325/239‑1 (MQ=255)                                                                                                                                                                  tCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGAt                                                                <  1:143239/239‑1 (MQ=255)                                                                                                                                                                            cGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCt                                                                                                    >  2:161326/1‑193 (MQ=255)                                                                                                                                                                            cGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCt                                                                                                    <  1:161326/193‑1 (MQ=255)                                                                                                                                                                            cGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGAt                                                                <  1:17665/229‑1 (MQ=255)                                                                                                                                                                            cGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGAt                                                                >  2:17665/1‑229 (MQ=255)                                                                                                                                                                                gtattgtgaggatatcaaaatgacacctttagttaaggatatcatcatgtcttcaacacgtaTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCt                                                                                                                                                                          <  2:163549‑M1/57‑1 (MQ=255)                                                                                                                                                                                gtattgtgaggatatcaaaatgacacctttagttaaggatatcatcatgtcttcaacacgtaTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCt                                                                                                                                                                          >  1:163549‑M1/63‑119 (MQ=255)                                                                                                                                                                                         gAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGATAACAATGATGATGATCATCAGtt                                         >  1:49771/1‑239 (MQ=255)                                                                                                                                                                                               aaaCCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGATAACAATGATGATGATCATCAGTTATTTTg                                   >  1:148638/1‑239 (MQ=255)                                                                                                                                                                                                aaCCACCATACGCGCATGCGGGCGTTGCAATGGCATCCCCAACTGCTACCAACTGCGGGTAAACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGATAACAATGATGATGATCATCAGTTATTTTGa                                  <  2:147956/239‑1 (MQ=255)                                                                                                                                                                                                                tGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACa                                                                                                                                           <  2:218950/118‑1 (MQ=255)                                                                                                                                                                                                                tGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACa                                                                                                                                           >  1:218950/1‑118 (MQ=255)                                                                                                                                                                                                                   gggCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGATAACAATGATGATGATCATCAGTTATTTTGACGATCTGCCTGAAGGTGaa               <  2:148638/239‑1 (MQ=255)                                                                                                                                                                                                                                 cATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGATAACAATGATGATGATCATCAGTTATTTTGACGATCTGCCTGAAGGTGAAGATTTATAAGGAg  <  2:49771/238‑1 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                 CCCAGGCTTCTTTATCCAGCGTCACCGGGATCGGCGCTAACAGCTCAACCAGACGCTGTGCCAGCGCAGGCGAACCCGGAGCAGGATAATGCGTATCGTACAGCGCCTGCGGGAAGCCACCAAAGTCATGAATCGTGGGCGGCGTCTCCATCGCGGTCA‑CTCCTGTTCCACGGGTAAACCAGTGAGCCGAAACCACCACAATCGCTTGCGGGCGTGGCAATGTCATCCCCAACTTCTGCCAGCTGCGGGTATACAAATTATCTTCCAGCACGTTCATCGGACTACCGTGACCTAAAAACAATGCTGGCATACGTGTTGAAGACATGATGATATCCTTAACTAAAGGTGTCATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGATAACAATGATGATGATCATCAGTTATTTTGACGATCTGCCTGAAGGTGAAGATTTATAAGGAG  >  NC_000913/3182083‑3182543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.