New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 359236	33 (0.790)	8 (0.210)	8/252	2.7	18.9%	coding (438/660 nt)	cynT	carbonic anhydrase
	?	NC_000913	= 359364	39 (1.050)					coding (566/660 nt)	cynT	carbonic anhydrase
Rejected: Frequency below/above cutoff threshold.

TCCCTTCCTACGGGCCG‑GAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCG  >  NC_000913/358998‑359455                                                                                                                                                                                                                                                |                                                                                                                                                                                                                            cccctTCCTACGGGCCG‑GAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCG                                                                                                                                                                                                                             <  3:280732‑M1/238‑1 (MQ=255)   ccattccacgggccgcGACCCAGGTGGTGTTTCGGCTTCGGTGGATGATGCCGTCGCGGCGCTGCGGGTATCGGACATTGTGATTTGTGGTCATTCCAACGGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCG                                                                                                                                                                                                                             <  4:238614‑M1/231‑1 (MQ=255)        cTACGGGCCG‑GAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCCCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATgg                                                                                                                                                                                                                      <  3:389383/239‑1 (MQ=255)                    aaCCGGGTGTCGTTTCTGCTGCGGTGGAGTAGGCCGTCGTTGCGCTTCGGTTACCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATg                                                                                                                                                                                                                       <  2:54629/227‑1 (MQ=255)                              cGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGaaa                                                                                                                                                                                                             >  1:54629/1‑227 (MQ=255)                                         cgggtgattATGCCGTCGCTTCGCTGCGGGTATCGAACTTGGGGATTTGTGGCCATCCCAACTGTGGCGCGATGCCCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCt                                                                                                                                                                                                  <  2:182504/219‑1 (MQ=255)                                         cGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagg                                                                                                                                                                                      >  3:378203‑M1/1‑200 (MQ=255)                                               aGTATGCCGTCGCGTCCTTTCGGATACCGGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTgcggc                                                                                                                                                                                                                           <  4:277304/196‑1 (MQ=255)                                                   tGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTa                                                                                                                                                                                        >  1:182504/1‑227 (MQ=255)                                                         cGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGt                                                                                                                                                                                                                 >  3:277304/1‑196 (MQ=255)                                                                          tgaacttgtggattggtggtcTTTCCACCTGTGGCACGTTGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcacc                                                                                                                                                     <  4:378203‑M1/229‑73 (MQ=255)                                                                                                     aCTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCt                                                                                                                                                                                         <  1:60108/176‑1 (MQ=255)                                                                                                     aCTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCt                                                                                                                                                                                         >  2:60108/1‑176 (MQ=255)                                                                                                      cttgggCGAGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCt                                                                                                                         <  3:237096/235‑1 (MQ=255)                                                                                                          ggCGCATTGCCCGCCATTGCCATCTGTCAGTGCATGGACCATATGCCTGCCGTCGCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGt                                                                                                                     <  4:365697/239‑1 (MQ=255)                                                                                                           gcgcGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGACCttgacg                                                                                                                            >  4:391489/1‑226 (MQ=255)                                                                                                                        cATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGaa                                                                                                                                                  <  3:20177/196‑1 (MQ=255)                                                                                                                                  tGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGt                                                                                                                                                                                                         <  4:124548/131‑1 (MQ=255)                                                                                                                                  tGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGt                                                                                                                                                                                                         >  3:124548/1‑131 (MQ=255)                                                                                                                                                         tgccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTg                                                                                                                                                           >  4:393040/1‑154 (MQ=255)                                                                                                                                                         tgccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTg                                                                                                                                                           <  3:393040/154‑1 (MQ=255)                                                                                                                                                          gccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGGGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCa                                                                                                                                                                                 >  4:459830/1‑131 (MQ=255)                                                                                                                                                          gccGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGGGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCa                                                                                                                                                                                 <  3:459830/131‑1 (MQ=255)                                                                                                                                                                   cACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTGCCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccgatggatgagtttgcaaattagccaactgagcaatgacgt                                                                                                             <  3:12367‑M1/190‑113 (MQ=255)                                                                                                                                                                   cACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccgatggatgagtttgcaaattagccaactgagcaatgacgt                                                                                                             >  4:12367‑M1/1‑78 (MQ=255)                                                                                                                                                                        gCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCACTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCt                                                                                                                                                            >  2:117923/1‑138 (MQ=255)                                                                                                                                                                        gCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCACTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCt                                                                                                                                                            <  1:117923/138‑1 (MQ=255)                                                                                                                                                                              ttATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGaaaa                                                                                                                                                                                                            <  3:12118/84‑1 (MQ=255)                                                                                                                                                                              ttATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGaaaa                                                                                                                                                                                                            >  4:12118/1‑84 (MQ=255)                                                                                                                                                                                  gCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCa                                                                                                                                                                                 <  1:43849/107‑1 (MQ=255)                                                                                                                                                                                  gCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCa                                                                                                                                                                                 >  2:43849/1‑107 (MQ=255)                                                                                                                                                                                      aTTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaa                                                                                                                                                                                                             <  3:452407‑M1/75‑17 (MQ=255)                                                                                                                                                                                      aTTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaa                                                                                                                                                                                                             >  4:452407‑M1/1‑59 (MQ=255)                                                                                                                                                                                        tCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTc                                        >  3:398519/1‑238 (MQ=255)                                                                                                                                                                                                             gcgcgcCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccg                                                                                                                                                    >  3:139632‑M1/1‑36 (MQ=255)                                                                                                                                                                                                             gcgcgcCCGCATTCCGATTTACCGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccg                                                                                                                                                    <  4:139632‑M1/109‑74 (MQ=255)                                                                                                                                                                                                             gcgcgcCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTat                   >  3:374207/1‑237 (MQ=255)                                                                                                                                                                                                             gcgcgcCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTAc                   >  3:172559/1‑238 (MQ=255)                                                                                                                                                                                                                             tttccccttaaaagGCTGCGGCAATGGTACGTGAAAACGTCATTGCTCATTTGGCTAATTGCCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGGGGGGCGGATCGCCCGGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCACCCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCg  <  4:398519/229‑1 (MQ=255)                                                                                                                                                                                                                                 aCCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTgg                                                    >  3:75720/1‑185 (MQ=255)                                                                                                                                                                                                                                 aCCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTgg                                                    <  4:75720/185‑1 (MQ=255)                                                                                                                                                                                                                                  ccGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcac                                                                                                                                                      >  2:51230‑M1/1‑15 (MQ=255)                                                                                                                                                                                                                                  ccGTCAAAAGCTGCGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcac                                                                                                                                                      <  1:51230‑M1/86‑72 (MQ=255)                                                                                                                                                                                                                                     tCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCg  <  3:249897/231‑1 (MQ=255)                                                                                                                                                                                                                                     tCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTCTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCg  >  4:249897/1‑231 (MQ=255)                                                                                                                                                                                                                                               cGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccgatggatgagtttgcaaattagccaactgagcaatgacgttttcacgtaccat                                                                                                <  4:285495‑M1/127‑126 (MQ=255)                                                                                                                                                                                                                                               cGatgctgccgctttcaatgtcgtagacccagccgtgcagggcgatccgcccctcttcgagcgccaggcgcaccgatggatgagtttgcaaattagccaactgagcaatgacgttttcacgtaccat                                                                                                >  3:285495‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                            TCCCTTCCTACGGGCCG‑GAACCCGGTGGCGTTTCTGCTTCGGTGGAGTATGCCGTCGCTGCGCTTCGGGTATCTGACATTGTGATTTGTGGTCATTCCAACTGTGGCGCGATGACCGCCATTGCCAGCTGTCAGTGCATGGACCATATGCCTGCCGTCTCCCACTGGCTGCGTTATGCCGATTCAGCCCGCGTCGTTAATGAGGCGCGCCCGCATTCCGATTTACCGTCAAAAGCTGCGGCGATGGTACGTGAAAACGTCATTGCTCAGTTGGCTAATTTGCAAACTCATCCATCGGTGCGCCTGGCGCTCGAAGAGGGGCGGATCGCCCTGCACGGCTGGGTCTACGACATTGAAAGCGGCAGCATCGCAGCTTTTGACGGCGCAACCCGCCAGTTTGTGCCACTGGCCGCTAATCCTCGCGTTTGTGCCATACCGCTACGCCAACCGACCGCAGCG  >  NC_000913/358998‑359455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.