BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1468681	NA (NA)	111 (1.350) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	12/108	9.2	NA	noncoding (560/1331 nt)	IS2	repeat region
*	?	NC_000913	1650843 =	NA (NA)	111 (1.350) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	12/108	9.2	NA	noncoding (1/706 nt)	IS2	repeat region
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 138 total aligned reads displayed.

AGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTT  >  NC_000913/1650745‑1650940

aGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTTCTGCCATTCCTCGCGAATCCAAGCAGACATCGGAAACACTGGATGCCGAGTTGGCCt                                                                                                   >  2:2711421/1‑99 (MQ=255)

  tACACTTAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGGATACTAGCGTACATGGAAATCACTGGAGGACGATCTGGCCTAt                                                                                                 <  2:1275499/99‑1 (MQ=255)

  tACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTAt                                                                                                 >  1:2699857/1‑99 (MQ=255)

    cacTGAAAGTTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATgg                                                                                               <  1:1469936/99‑1 (MQ=255)

    cacTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATgg                                                                                               <  1:1817655/99‑1 (MQ=255)

     acTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATggg                                                                                              >  2:278550/1‑99 (MQ=255)

     acTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATggg                                                                                              >  1:617260/1‑99 (MQ=255)

      cTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgc                                                                                             >  1:134194/1‑99 (MQ=255)

       tGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcg                                                                                            >  1:2332019/1‑99 (MQ=255)

        gAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcgc                                                                                           <  2:81387/99‑1 (MQ=255)

        gAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcgc                                                                                           <  2:64360/99‑1 (MQ=255)

         aaaaTTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCgct                                                                                          >  1:3228351/1‑99 (MQ=255)

              acAACAGGAAAAATCAGCCCATTAATTGCTGCCATGCATCCCGAATACACACAGACATGGAAAACCATGCATACCGAACTGGCCTATGAGCGCAGCTTc                                                                                     <  2:1647891/98‑1 (MQ=255)

                aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                   >  2:2026255/1‑99 (MQ=255)

                aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                   <  1:1240899/99‑1 (MQ=255)

                aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                   <  1:2549203/99‑1 (MQ=255)

                aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                   >  2:2625045/1‑99 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                  <  1:329676/99‑1 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                  >  1:1369126/1‑99 (MQ=255)

                   aGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGa                                                                                >  1:1424213/1‑99 (MQ=255)

                   aGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGa                                                                                >  1:2976722/1‑99 (MQ=255)

                   aGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGa                                                                                <  1:2644746/99‑1 (MQ=255)

                    ggAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGAc                                                                               <  1:1296406/99‑1 (MQ=255)

                     gAAAAATCAGCCCGGTCATTGCTGCCATTCGTCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACa                                                                              >  1:3175363/1‑99 (MQ=255)

                      aaaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAg                                                                             <  2:1388255/99‑1 (MQ=255)

                        aaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGc                                                                           >  1:1979258/1‑99 (MQ=255)

                        aaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGc                                                                           <  1:496811/99‑1 (MQ=255)

                         aaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCa                                                                          <  2:1233401/99‑1 (MQ=255)

                         aaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCa                                                                          <  1:760737/99‑1 (MQ=255)

                         aaTCAGCCCGGTCATTGCTGCCATTAAGCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCa                                                                          <  2:2406863/99‑1 (MQ=255)

                           tCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGa                                                                        >  1:1864579/1‑99 (MQ=255)

                            cAGCCCGGTCATTGCTGCCATTCATCGCGAATACGAGCAGGCATGGAAACCACGGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGac                                                                       <  1:2289122/99‑2 (MQ=38)

                              gCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACt                                                                     >  2:1532004/1‑99 (MQ=255)

                                 cGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGa                                                                  <  1:289194/99‑1 (MQ=255)

                                 cGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGa                                                                  >  1:2358939/1‑99 (MQ=255)

                                   gTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATg                                                                <  1:1144872/99‑1 (MQ=255)

                                   gTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATg                                                                <  2:3315282/99‑1 (MQ=255)

                                   gTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATg                                                                <  2:2787484/99‑1 (MQ=255)

                                   gTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATg                                                                <  1:3606118/99‑1 (MQ=255)

                                    tCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATgg                                                               <  2:577968/99‑1 (MQ=255)

                                    tCATTGCTGCCATGCATCGCGAATACAAGCAGACATGCAAAACACCGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATgg                                                               <  1:165192/99‑1 (MQ=255)

                                       ttGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAt                                                            <  2:1459954/99‑1 (MQ=255)

                                         gctgcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGc                                                          <  1:1528929/99‑1 (MQ=255)

                                           tgcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCt                                                        >  2:43990/1‑99 (MQ=255)

                                               aTTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGa                                                    <  1:1088028/99‑1 (MQ=255)

                                                ttCATCGCGAATACAAGCAGACATGGAAATCACTGGATGACGATCTGGACTATGGGAGCTGCTTAGCCGACAGGAAGACCCTCATGGTCTGCGTGGGAt                                                   <  2:2904014/99‑1 (MQ=255)

                                                ttCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGAt                                                   <  1:2722371/99‑1 (MQ=255)

                                                   aTCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCaa                                                <  1:3889546/99‑1 (MQ=255)

                                                   aTCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCaa                                                <  2:3112204/99‑1 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               <  1:3604773/99‑1 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               <  2:3655190/99‑1 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               >  1:3245918/1‑99 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               <  1:826355/99‑1 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               <  1:3116846/99‑1 (MQ=255)

                                                     cgcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATg                                              >  1:2803899/1‑99 (MQ=255)

                                                      gcgAATCCAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGc                                             <  1:2921579/99‑1 (MQ=255)

                                                      gcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGGAGAACTCGATGGTACGTCTGCGAGCAATga                                             >  1:3221172/1‑98 (MQ=25)

                                                      gcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGc                                             <  2:2980480/99‑1 (MQ=255)

                                                        gAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCa                                           >  2:2851143/1‑99 (MQ=255)

                                                        gAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCa                                           >  1:3169639/1‑99 (MQ=255)

                                                          aTACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGATGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCaaa                                         >  1:2555142/1‑99 (MQ=255)

                                                             cAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgt                                      <  1:2201239/99‑1 (MQ=255)

                                                              aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCGGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                     >  1:1248628/1‑99 (MQ=255)

                                                              aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                     >  1:1912428/1‑99 (MQ=255)

                                                              aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                     >  1:2496680/1‑99 (MQ=255)

                                                               aGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATTGTATGCCTGCGATCAATGCCAAACgtgt                                    <  1:3896049/99‑1 (MQ=255)

                                                               aGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtgt                                    <  1:463017/99‑1 (MQ=255)

                                                               aGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtgt                                    >  2:826372/1‑99 (MQ=255)

                                                                gCAGACATGGAAAACACTGGATGACGAACTGGCCTCTGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAACCGTGtt                                   >  1:3965099/1‑99 (MQ=255)

                                                                  aGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTCGATGGTATGCCCGCGATCAATGCCAAACGTGTTTa                                 >  2:2631275/1‑99 (MQ=255)

                                                                   gACGTGGAAGACACTGGATGACGAGCTGGCCTATGGGCGCTGCGTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTAc                                <  2:2981042/99‑1 (MQ=17)

                                                                    aCATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTAcc                               <  1:2351537/99‑1 (MQ=255)

                                                                       tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            >  2:1109297/1‑99 (MQ=255)

                                                                        ggAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGAt                           >  2:1904166/1‑99 (MQ=255)

                                                                        ggAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGAt                           <  1:3418737/99‑1 (MQ=255)

                                                                         gAAAACGCTCGACGACGAACTAGCCTATCGGCGCTGCTTCGCAGACAGGCAGAACTTTATGGTATGACTGCGATCAATGCCAAACGTGTTTACCGGATc                          <  2:2132688/99‑1 (MQ=14)

                                                                         gAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATc                          >  1:1293544/1‑99 (MQ=255)

                                                                           aaaCACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCAt                        <  1:1098676/99‑1 (MQ=255)

                                                                            aaCACTGGGTGACGAACGGGCCTATGGGCGCTGGTTCGGAGAAAGGCAGAACTTGATGGTATGCCTGCGAGCAATGCCATACGTGTTTACTGGATCagg                       >  2:395160/1‑97 (MQ=17)

                                                                             acacTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgc                      <  1:717114/99‑1 (MQ=255)

                                                                               acTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgcgc                    >  1:1282194/1‑99 (MQ=255)

                                                                                cTGGATGACGAACTGGCCTAGGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGcc                   <  2:1034263/99‑1 (MQ=255)

                                                                                 tGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCa                  >  1:402496/1‑99 (MQ=255)

                                                                                   gATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGa                >  2:1838691/1‑99 (MQ=255)

                                                                                      gACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATg             >  1:1235006/1‑99 (MQ=255)

                                                                                       aCGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgc            >  2:3717115/1‑99 (MQ=255)

                                                                                       aCGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgc            <  1:2887328/99‑1 (MQ=255)

                                                                                        cGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcg           >  2:1970351/1‑99 (MQ=255)

                                                                                         gAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcgc          <  1:259485/99‑1 (MQ=40)

                                                                                          aaCTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCt         <  1:2877253/99‑1 (MQ=39)

                                                                                           aCTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTg        >  1:964205/1‑99 (MQ=38)

                                                                                           aCTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTg        >  1:3265873/1‑99 (MQ=38)

                                                                                            cTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAGACGTGTTTACCGGATCATGCGCCAGAATGCGCTGt       <  2:1508809/99‑1 (MQ=255)

                                                                                             tGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGtt      <  2:239199/99‑1 (MQ=35)

                                                                                             tGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAACGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGtt      <  1:72933/99‑1 (MQ=25)

                                                                                               gCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc    >  2:2583643/1‑99 (MQ=33)

                                                                                                ccTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCt   <  1:3940911/99‑1 (MQ=32)

                                                                                                ccTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCt   >  2:681703/1‑99 (MQ=32)

                                                                                                 cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtt  >  1:71701/1‑99 (MQ=31)

                                                                                                 cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtt  >  2:1540239/1‑99 (MQ=31)

AGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTT  >  NC_000913/1650745‑1650940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.