BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	142 [0]	[0] 142	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	127 (0.920)	84/180	0.2	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	127 (0.920)	84/180	0.2	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 142 total aligned reads displayed.

CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT  >  NC_000913/1979184‑1979376

ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                >  1:1073579‑M2/96‑99 (MQ=255)

ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                <  2:48167‑M2/4‑1 (MQ=255)

 tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                               <  1:1302974‑M2/5‑1 (MQ=255)

  cgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                              <  1:2452385‑M2/6‑1 (MQ=255)

   gtcactacacgcacatacaacggaggggggctgcgattttccataatgcgtgctgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                             <  2:2906605‑M2/7‑1 (MQ=255)

   gtcactacaagcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                             >  2:3540827‑M2/93‑99 (MQ=255)

    tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                            >  2:2014271‑M2/92‑99 (MQ=255)

    tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgggatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTc                                                                                            >  2:1919826‑M2/92‑99 (MQ=255)

       ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                         >  1:2609654‑M2/89‑99 (MQ=255)

        tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                        >  1:2896420‑M2/88‑99 (MQ=255)

          cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtt                                                                                      <  1:856216‑M2/14‑1 (MQ=255)

            cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                    <  1:1889638‑M2/16‑1 (MQ=255)

            cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                    <  1:1172145‑M2/16‑1 (MQ=255)

             gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                   >  1:721667‑M2/83‑99 (MQ=255)

             gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                   >  1:626981‑M2/83‑99 (MQ=255)

             gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                   >  1:3441643‑M2/83‑99 (MQ=255)

              cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                  >  1:378222‑M2/82‑99 (MQ=255)

               acatacaacggaggtgggcttcgattttcaataattcgtgatgcagatcacacaaaacactcaatttcttaacataaatgTATAAGTCATACttttgtt                                                                                 <  2:1269397‑M2/19‑1 (MQ=255)

                 atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                               >  1:1690002‑M2/79‑99 (MQ=255)

                 atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                               <  2:2649774‑M2/21‑1 (MQ=255)

                 atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                               <  2:1039411‑M2/21‑1 (MQ=255)

                   acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                             <  2:1420827‑M2/23‑1 (MQ=255)

                   acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                             <  1:1919142‑M2/23‑1 (MQ=255)

                   acaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                             <  2:1043210‑M2/23‑1 (MQ=255)

                   acaacggagggcggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                             <  2:2873646‑M2/23‑1 (MQ=255)

                   acaacggaagggggctgcgattttcaataatgcgtgatgtagattacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                             <  2:3496321‑M2/23‑1 (MQ=255)

                      acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                          >  1:3034694‑M2/74‑99 (MQ=255)

                           ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                     <  1:488124‑M2/31‑1 (MQ=255)

                           ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                     >  1:160364‑M2/69‑99 (MQ=255)

                           ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                     >  1:159998‑M2/69‑99 (MQ=255)

                           ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                     <  1:1789534‑M2/31‑1 (MQ=255)

                                gctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                <  2:1528260‑M2/36‑1 (MQ=255)

                                 ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                               >  1:1475029‑M2/63‑99 (MQ=255)

                                  tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTg                                                              >  2:1869778‑M2/62‑99 (MQ=255)

                                   gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                             <  1:2162377‑M2/39‑1 (MQ=255)

                                   gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                             <  1:3653564‑M2/39‑1 (MQ=255)

                                    cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                            <  1:3370801‑M2/40‑1 (MQ=255)

                                     gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                           >  1:3345643‑M2/59‑99 (MQ=255)

                                       ttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                         <  1:1421142‑M2/43‑1 (MQ=255)

                                        ttttaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                        <  2:2323638‑M2/44‑1 (MQ=255)

                                         ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGttaaaca                                                       <  2:80572‑M2/45‑3 (MQ=255)

                                         ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                       >  2:460512‑M2/55‑99 (MQ=255)

                                          tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                      <  2:2735485‑M2/46‑1 (MQ=255)

                                          tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                      >  1:510675‑M2/54‑99 (MQ=255)

                                          tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg                                                      <  2:3801598‑M2/46‑1 (MQ=255)

                                           caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGt                                                     <  2:3312823‑M2/47‑1 (MQ=255)

                                             ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATCAGTCAGACTTTTGTTTTGAGTGTAATCCAATCTGTTAAAAAGttt                                                   >  1:3707159‑M2/51‑99 (MQ=255)

                                             ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                   <  2:314347‑M2/49‑1 (MQ=255)

                                              taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                  >  2:1416536‑M2/50‑99 (MQ=255)

                                               aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                 <  1:333403‑M2/51‑1 (MQ=255)

                                               aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                 >  1:1838628‑M2/49‑99 (MQ=255)

                                               aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                 >  1:1240383‑M2/49‑99 (MQ=255)

                                                atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                <  1:1798469‑M2/52‑1 (MQ=255)

                                                       atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                         <  1:3394652‑M2/59‑1 (MQ=255)

                                                       atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                         >  1:1143189‑M2/41‑99 (MQ=255)

                                                         gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                       <  2:1589058‑M2/61‑1 (MQ=255)

                                                         gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                       <  2:3788319‑M2/61‑1 (MQ=255)

                                                          cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                      <  1:2396674‑M2/62‑1 (MQ=255)

                                                           agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                     <  1:578107‑M2/63‑1 (MQ=255)

                                                           agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                     <  1:3818464‑M2/63‑1 (MQ=255)

                                                            gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagca                                    >  1:3457019‑M2/36‑99 (MQ=255)

                                                              tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                  >  2:2845271‑M2/34‑99 (MQ=255)

                                                              tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                  <  1:2910663‑M2/66‑1 (MQ=255)

                                                                 cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                               >  1:1831142‑M2/31‑99 (MQ=255)

                                                                 cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                               <  2:700349‑M2/69‑1 (MQ=255)

                                                                  acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa                              >  1:1830752‑M2/30‑99 (MQ=255)

                                                                   caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                             <  1:2836872‑M2/71‑1 (MQ=255)

                                                                    aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                            >  2:2339461‑M2/28‑99 (MQ=255)

                                                                    aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCACTACGCTAGCAAGCaaaaa                            <  2:46332‑M2/72‑1 (MQ=255)

                                                                    aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCACTACGCTAGCAAGCaaaaa                            <  2:3519450‑M2/72‑1 (MQ=255)

                                                                     aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                           <  1:1655993‑M2/73‑1 (MQ=255)

                                                                       acactcaattacttaacataaatgTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                         <  1:2674068‑M2/75‑1 (MQ=255)

                                                                        cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                        <  1:1508863‑M2/76‑1 (MQ=255)

                                                                         actcaattacttaacataaatgTATAAGTTATACTTTTGTTTCGGGTTTATTTCAATCTGGTAAAAAGCTTTTCGCTACGCTAGCGAGCAAAAATGaaa                       >  2:3716542‑M2/23‑99 (MQ=255)

                                                                         actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                       >  1:3624334‑M2/23‑99 (MQ=255)

                                                                         actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                       >  1:1721642‑M2/23‑99 (MQ=255)

                                                                         actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                       <  1:2461040‑M2/77‑1 (MQ=255)

                                                                         actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                       >  1:1226388‑M2/23‑99 (MQ=255)

                                                                          ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                      <  2:1674855‑M2/78‑1 (MQ=255)

                                                                           tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                     >  2:3368744‑M2/21‑99 (MQ=255)

                                                                           tcaattactgaacgtaaatgTATAGGTGGTACTTTTGTTTTGGGTGTATTTCAATCTGGTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                     >  2:860916‑M2/21‑99 (MQ=255)

                                                                             aattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                   >  2:2764230‑M2/19‑99 (MQ=255)

                                                                             aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                   >  2:1516810‑M2/19‑99 (MQ=255)

                                                                              attacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                  >  2:119491‑M2/18‑99 (MQ=255)

                                                                                 acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTTTTTTTTTTTTCAAGCAAAAATGAAACAGGaata               >  2:3731268‑M2/15‑99 (MQ=255)

                                                                                   ttaacataactgTATAAGTCATACTTTTGTTCTGTGTGTATTTCAATCTGTTCAAAAGTTTTTAGCTACGCTAGCAAGCAAAAATGAAACAGGaataat             >  2:3547049‑M2/13‑99 (MQ=255)

                                                                                   ttaacataaatgTATAAGTCAGACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat             <  2:2015530‑M2/87‑1 (MQ=255)

                                                                                   ttaacataaatgTAGAAGTCATACTTTTGGTGTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCATAAATGAAACAGGaataat             <  2:3510951‑M2/87‑1 (MQ=255)

                                                                                      acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTTTTTTTTTTTTCAAGCAAAAATGAAACAGGAATAATCGa          >  2:694568‑M2/10‑99 (MQ=255)

                                                                                      acataaatgTATAAGTCATACTTTTGTTTTAGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa          <  1:3096272‑M2/90‑1 (MQ=255)

                                                                                        ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa        >  1:788061‑M2/8‑99 (MQ=255)

                                                                                        ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGAAATAATCGaaa        >  2:3168609‑M2/8‑99 (MQ=255)

                                                                                         taaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt       <  1:333165‑M2/93‑1 (MQ=255)

                                                                                          aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg      >  1:1263869‑M2/6‑99 (MQ=255)

                                                                                          aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg      >  2:1494385‑M2/6‑99 (MQ=255)

                                                                                          aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg      >  2:1297454‑M2/6‑99 (MQ=255)

                                                                                           aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg     <  1:2860917‑M2/95‑1 (MQ=255)

                                                                                             tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa   >  1:25684‑M2/3‑99 (MQ=255)

                                                                                             tgTATAAGTCATACTTTTGTTTAGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATACTCGAAATGGGa   >  2:1935376‑M2/3‑99 (MQ=255)

                                                                                              gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt  <  1:2234579‑M2/98‑1 (MQ=255)

CAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT  >  NC_000913/1979184‑1979376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`