Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,520,5041.T24.2% 398.7 / 179.6 161intergenic (‑180/+167)yjhU/yjhFputative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
Reads supporting (aligned to +/- strand):  ref base . (66/56);  new base T (22/17);  total (88/73)
Fisher's exact test for biased strand distribution p-value = 8.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 164 total aligned reads displayed.

GATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAG  >  NC_000913/4520407‑4520601
                                                                                                  |                                                                                                 
gATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCCATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGGCATG‑c                                                                                                  <  1:3362112/99‑1 (MQ=255)
      ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCGTTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGc                                                                                            <  2:1497820/99‑1 (MQ=38)
      ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGc                                                                                            <  1:2131380/99‑1 (MQ=38)
      ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGc                                                                                            <  2:416831/99‑1 (MQ=38)
      ataCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGc                                                                                            <  2:2372029/99‑1 (MQ=38)
       taCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCt                                                                                           <  1:176942/99‑1 (MQ=38)
        aCAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCtt                                                                                          <  1:641414/99‑1 (MQ=38)
        aCAGATATGTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCtt                                                                                          <  2:1889441/99‑1 (MQ=38)
         cAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGACCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTACGGCttt                                                                                         >  2:355395/1‑99 (MQ=255)
          aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTa                                                                                        >  1:546342/1‑99 (MQ=255)
          aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTa                                                                                        <  1:2612854/99‑1 (MQ=255)
          aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTa                                                                                        >  1:1167139/1‑99 (MQ=255)
          aGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAACCCGGAGACATG‑CTCCGGCTTTa                                                                                        >  1:2577167/1‑99 (MQ=255)
          aGATATTTTATTCTTTGACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCTTTa                                                                                        <  2:1118767/99‑1 (MQ=38)
            atatTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACa                                                                                      <  2:3526748/99‑1 (MQ=255)
            atatTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACa                                                                                      >  2:3666424/1‑99 (MQ=255)
            atatTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCTTTACa                                                                                      <  1:700310/99‑1 (MQ=38)
            atatTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAG‑CATGTCTCCGGCTTTACa                                                                                      <  2:808959/99‑1 (MQ=38)
            atatTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACCGTAAAGCCGGAG‑CATGTCTCCGGCTTTACa                                                                                      <  1:2926987/99‑1 (MQ=38)
            atatTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTGCCCCCATACTGTAAGGCCGGAG‑CATGTCTCCGGCTTTACa                                                                                      <  2:3324275/99‑1 (MQ=37)
               ttttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTa                                                                                   >  1:2704030/1‑99 (MQ=255)
               ttttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTa                                                                                   >  2:2132037/1‑99 (MQ=255)
               ttttATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTa                                                                                   >  1:3415943/1‑99 (MQ=255)
                    ttCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACt                                                                              <  2:1800492/99‑1 (MQ=255)
                    ttCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACt                                                                              <  2:524811/99‑1 (MQ=255)
                       ttttACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTgag                                                                           <  2:2113058/99‑1 (MQ=255)
                         ttACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGaa                                                                         <  1:2499988/99‑1 (MQ=255)
                             aTGAAATAAACCAGCATACCGTTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAACCGGAGACATG‑CTGCGGCGTTACAGTCTTACTGATAGTaca                                                                     >  1:3792999/1‑99 (MQ=255)
                             aTGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATaca                                                                     <  2:1254923/99‑1 (MQ=255)
                             aTGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATaca                                                                     <  1:2009705/99‑1 (MQ=255)
                             aTGAAATAAACCAGCATACCATTTGAGCGATAGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATaca                                                                     >  2:269958/1‑99 (MQ=255)
                               gAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACAcc                                                                   >  1:1054416/1‑99 (MQ=255)
                                aaaTAAACCAGCATACGATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACAccc                                                                  >  1:2984281/1‑99 (MQ=255)
                                aaaTAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACGccc                                                                  >  1:3196635/1‑99 (MQ=255)
                                 aaTAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCa                                                                 >  2:960079/1‑99 (MQ=255)
                                 aaTAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCa                                                                 >  1:1194874/1‑99 (MQ=255)
                                 aaTAAACCAGCATACAATTTAAGCGATCGCGCACTGTTCCGCCATACTCTAAAGCCGGAGCCACA‑CCCCGCCTTCACAGTACTACTCAGAATACACCCa                                                                 >  2:1113633/1‑99 (MQ=255)
                                      aCCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAg                                                            >  2:3026680/1‑99 (MQ=255)
                                      aCCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAg                                                            <  1:130825/99‑1 (MQ=255)
                                       ccAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGc                                                           >  2:3283197/1‑99 (MQ=255)
                                        cAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCa                                                          >  1:2923788/1‑99 (MQ=255)
                                         aGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCAt                                                         <  2:2036326/99‑1 (MQ=255)
                                          gCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATa                                                        >  1:463723/1‑99 (MQ=255)
                                             tACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATc                                                     >  1:503404/1‑99 (MQ=255)
                                               ccATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGa                                                   <  2:3231062/99‑1 (MQ=255)
                                                   ttGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGt                                               >  1:3658538/1‑99 (MQ=255)
                                                     gAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTc                                             <  1:252455/99‑1 (MQ=255)
                                                     gAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTc                                             >  1:3837595/1‑99 (MQ=255)
                                                        cGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAat                                          <  1:2545995/99‑1 (MQ=255)
                                                           tCGCCCGCTGTTCCCCCATCCTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATc                                       >  1:3084692/1‑99 (MQ=255)
                                                           tCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATc                                       <  1:1498776/99‑1 (MQ=255)
                                                             gCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGc                                     >  2:2010987/1‑99 (MQ=255)
                                                             gCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGc                                     <  1:2457564/99‑1 (MQ=255)
                                                              cccGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGcc                                    >  2:2348127/1‑99 (MQ=255)
                                                              cccGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTCTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGcc                                    >  2:1089875/1‑99 (MQ=255)
                                                               ccGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGccc                                   >  1:1916997/1‑99 (MQ=255)
                                                                cGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGcccc                                  <  1:1488335/99‑1 (MQ=255)
                                                                 gCTGTTCCCCCATACTGTAAAGCCGGAGACCTC‑CTCCGGCTTTACACTATTACTGAGCATACACACATCCAGCATAATCGAAGGTTCAAGCACGCCCCt                                 >  2:2411575/1‑99 (MQ=255)
                                                                   tGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCttt                               <  2:713267/99‑1 (MQ=255)
                                                                     ttCCCCCATACTGTACAGCCGGAGACCTC‑CTCCTGCTTTACAGTAGTACTGAGCATACACCCATCAAGCATACTCGAAGGTTCAATCTCGCCCCttttc                             <  2:205613/99‑2 (MQ=255)
                                                                       cccccATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGa                           >  1:3899686/1‑99 (MQ=255)
                                                                        agtaaTACTGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCGCCTTTTTGAt                          >  1:2817184/5‑99 (MQ=25)
                                                                          taaTACTGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCg                        >  1:144095/3‑99 (MQ=37)
                                                                          ccATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCg                        >  2:1335998/1‑99 (MQ=255)
                                                                           cATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGGATTACTGAGAATACGCCCATCAGGCAGACGCGAAGGTTCAATAGCGCCCCTTTTTGATCGc                       <  2:1881542/99‑1 (MQ=38)
                                                                            aTACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGcc                      <  2:3129966/99‑1 (MQ=255)
                                                                             tACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCa                     >  2:1696801/1‑99 (MQ=255)
                                                                             tACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCa                     <  1:3243599/99‑1 (MQ=255)
                                                                              cttGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAg                    <  2:1094360/97‑1 (MQ=37)
                                                                               cTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGc                   >  1:746975/1‑99 (MQ=255)
                                                                               cTGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGc                   >  1:3297482/1‑99 (MQ=38)
                                                                                tGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTTTTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTTATCGCCAGCg                  >  2:1498129/1‑99 (MQ=255)
                                                                                tGTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCg                  >  1:937671/1‑99 (MQ=38)
                                                                                 gTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGcag                 >  1:1125494/1‑97 (MQ=38)
                                                                                 gTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa                 >  2:3346298/1‑99 (MQ=38)
                                                                                 gTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa                 >  1:1619590/1‑99 (MQ=38)
                                                                                 gTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa                 >  2:182701/1‑99 (MQ=38)
                                                                                 gTAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGa                 >  2:2826367/1‑99 (MQ=38)
                                                                                  tAAAGCGGGAGACATG‑CTTCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGATCAATATCGCCCCTTTTTGATAGCCAGCGAt                >  2:3328228/1‑99 (MQ=255)
                                                                                  tAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAt                >  1:254198/1‑99 (MQ=255)
                                                                                  tAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAt                >  1:2592848/1‑99 (MQ=255)
                                                                                  tAAAGCCGGAGACATG‑CCCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAt                <  2:699106/99‑1 (MQ=255)
                                                                                  tAAAGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAt                >  1:3941223/1‑99 (MQ=38)
                                                                                   aaaGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGAtt               >  1:2406111/1‑99 (MQ=255)
                                                                                    aaGCTGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc              <  2:3152054/99‑1 (MQ=255)
                                                                                    aaGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGGGATTc              >  1:3748645/1‑99 (MQ=255)
                                                                                    aaGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc              >  1:2096924/1‑99 (MQ=255)
                                                                                    aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCCGCGATTc              >  2:1908289/1‑99 (MQ=38)
                                                                                    aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc              >  2:3078000/1‑99 (MQ=38)
                                                                                    aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc              >  2:1729925/1‑99 (MQ=38)
                                                                                    aaGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTc              >  1:575426/1‑99 (MQ=38)
                                                                                     aGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCg             >  1:1871624/1‑99 (MQ=255)
                                                                                     aGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCTAGCGATTCg             >  1:1675173/1‑99 (MQ=38)
                                                                                     aGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCg             >  2:1317300/1‑99 (MQ=38)
                                                                                     aGCCGGAG‑CATGTCTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCg             >  1:3709036/1‑99 (MQ=38)
                                                                                      gCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGt            >  1:286117/1‑99 (MQ=255)
                                                                                       ccGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTc           >  1:1630167/1‑99 (MQ=255)
                                                                                         ggAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCAc         >  1:1935069/1‑99 (MQ=255)
                                                                                             aCATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTg     <  1:328182/99‑1 (MQ=255)
                                                                                                tG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATAGCCCCTTCTTGCTTGCCAGCGATTCGTCACCGTGCAg  >  1:3382360/1‑99 (MQ=255)
                                                                                                  |                                                                                                 
GATTTTATACAGATATTTTATTCTTTTACATGAAATAAACCAGCATACCATTTGAGCGATCGCCCGCTGTTCCCCCATACTGTAAAGCCGGAGACATG‑CTCCGGCTTTACAGTATTACTGAGAATACACCCATCAAGCATAATCGAAGGTTCAATATCGCCCCTTTTTGATCGCCAGCGATTCGTCACCGTGCAG  >  NC_000913/4520407‑4520601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑