Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,174,605	0	T	C	32.6%	100.3 / 14.0	50	G187G (GGA→GGG)	ycfT	inner membrane protein
Reads supporting (aligned to +/- strand):  ref base T (31/2);  new base C (0/16);  total (31/19)
Fisher's exact test for biased strand distribution p-value = 4.57e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

ATACCGAATCGTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCAC  >  NC_000913/1174375‑1174836                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                        aTACCGAATCGTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCccacca                                                                                                                                                                                                                                 <  1:1178352/239‑1 (MQ=255)  tACCGAATCGTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCcaccac                                                                                                                                                                                                                                >  1:1036576/1‑239 (MQ=255)                                  ttCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGGAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCACCCCAATca                                                                                                                                                                                                 >  2:923010/1‑238 (MQ=255)                                      taaccaccaaAACCGACACAAGCAAAAACAGCAGCGAAATA‑AAAACACACAGGCACCCGCCCGCAAGAGCGGAAAGA‑AAAGAAGCCACCAGGAGAGGGCGGCGCAAGGGCCCCTTT‑TAAACACGGGTCATTATTGGTGCGCAAAACC‑AGGCGCAAAGGCTGTAAAAAGGAAAATGGAGGACCACCC‑TGTTCCTCCCCCCCCACGGGGTGGGAACAAAATTAACCGCCACACTCAGCAGt                                                                                                                                                                                            <  2:112633/235‑1 (MQ=255)                                           accacAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGTCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaa                                                                                                                                                                                        >  1:1175243/1‑238 (MQ=255)                                                  tCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTcagca                                                                                                                                                                                              >  1:1103295/1‑225 (MQ=255)                                                     aTACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAACAAAGGCGAAt                                                                                                                                                                             >  2:926887/1‑239 (MQ=255)                                                       aCCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCAAACTCAGCAGTACAAACAAGGCGAATAg                                                                                                                                                                           >  2:244534/1‑239 (MQ=255)                                                       aCCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCCCCACACTCCGCCGTACAAACAAGGCGAagag                                                                                                                                                                           >  2:233494/1‑239 (MQ=255)                                                                          agaTAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTa                                                                                                                                                        >  1:440726/1‑239 (MQ=255)                                                                                       ccAGGCA‑CCGACAGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCCCGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGAAGCGACAGACGGCCaaaaacataccaa                                                                                                                                            >  2:629265/1‑230 (MQ=255)                                                                                          ggCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACAAAcc                                                                                                                                         >  2:475042/1‑238 (MQ=255)                                                                                                  accgCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCCACCGCACCCCC‑TTAACACAGGTCATTATTGCTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGCTCACAC‑TGTTCATTCCCCACCACGGCGTGGGCACGAAATTAACCGGCCCACTCAGCAGCACAACAACTGCGAACAGAGGCAGCGCCAAACCGCGAAAACACTTACAAACCaacaaaaa                                                                                                                                 >  2:516451/1‑232 (MQ=255)                                                                                                         aaccGGCAAAC‑AAAGACGCCATCAGCGTGGGGCGGCGCACCGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAACCC‑ATGCGCCAGGGCTGAAAAAAGAAAAATTGCGGATCACCC‑TGTTCATCCCCCACCACGGGGTGGAAACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAAtt                                                                                                                          <  2:440726/236‑1 (MQ=255)                                                                                                            aggTAAGCAAAAGAACCCATGAGAAGGGGGCGGCGCACCGGCCCCTCT‑AAACCCCAGTTCTTTTTTGTGGCGCAAACCC‑GTGCGCCAGGGGTAAAAAAAGAAAATTGGCGACTCCCAT‑TGTCCTTCCCCCCCCCCGGGGGGGAAAAAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTaa                                                                                                                        <  2:378380/238‑1 (MQ=255)                                                                                                              gtaaaaaaaaGAAGCCATCGGCAGATGGCGACACAGCGGCACTTCT‑TAAAAAGAGGAAATT‑TTGGTGCGCCAAACCAACGCACAAAGGGTAAAAAAAGGAAAAATGCGGAACACAC‑TGTTCAGCCCCCCCCAGGGGGGGGAAACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACg                                                                                                                      <  2:1175243/232‑1 (MQ=255)                                                                                                                       agaagCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACAACGAAATAGACAATTAACGCATACAGAt                                                                                                             >  1:1085706/1‑239 (MQ=255)                                                                                                                                    gtggggcggcGCACCGACA‑CTCTGTTAACACAGGTAATTGTTGGTACGCAAACCC‑ATGCGCAAAGGCTGAAATAGGACAAATGGCGGATCACAC‑TGTTCCTCCCCACCCAGGGGGGGGAAACAAAATAAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCt                                                                                                   <  2:938544/232‑1 (MQ=255)                                                                                                                                      ctGGCGGCGCAACGACATCTCG‑TAAACCCATGTCATGATTTACGCGACAGACC‑GCGCTCCAGGGTTGTAATAAGG‑AAAATGCGGAACCCCCGTTTTCTCCCCCCCCCACGGGGGGGAAAAAAAATTAGCCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATCCCACAAGCTGGTg                                                                                               <  2:112/237‑1 (MQ=255)                                                                                                                                                        atct‑TCACCACAGGTAATTGTTGTGCCGCCAAACC‑AGGCACCAAGGTTATAAGAAGCAAAATGGCGCACCACAT‑TTTTCTCCCCCCCCCGCGGGGGGGAAAAGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTg                                                                                               <  2:671970/219‑1 (MQ=255)                                                                                                                                                           t‑ttAACACGGGTATTTTTTGTTGCCCCAACCC‑AGGCGCCAAGGGTGTAATAAGGCAAATTGCGGATCACCC‑TGTTCATCCCCCACCCCGGCGTGGAAACGAAATTAACCg                                                                                                                                                                                                          <  1:778405/110‑1 (MQ=255)                                                                                                                                                                   caGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACa                                                                                                                >  1:1321983/1‑193 (MQ=255)                                                                                                                                                                      gTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTccc                                                                                                                                                                                                                                      <  1:1333946/72‑1 (MQ=255)                                                                                                                                                                      gTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTccc                                                                                                                                                                                                                                      >  2:1333946/1‑72 (MQ=255)                                                                                                                                                                      gTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTcag                                                                                                                                                                                                >  2:778405/1‑110 (MQ=255)                                                                                                                                                                      gTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTacaaac                                                                                                                                                                                      >  1:102388/1‑120 (MQ=255)                                                                                                                                                                      gTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTa                                                                                                                                                                                           >  1:303077/1‑115 (MQ=255)                                                                                                                                                                      gTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGTGGGGGTCAACCCCGGCAGGAAcacccc                                                               >  2:867623/1‑234 (MQ=255)                                                                                                                                                                      gTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGGGat                                                                                    >  1:27405/1‑218 (MQ=255)                                                                                                                                                                      gTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGGGCTGGCGGGGATCATCCCCTGCAGGCAATCAcc                                                               >  2:376775/1‑239 (MQ=255)                                                                                                                                                                           tattGTTGCGCCAACCC‑ATGCGCCAAGGCTGTAATAAGGAAAATGGCGGATCACAC‑TGTTCATCCCCCCCCCCGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCa                                                                 <  1:64407/232‑1 (MQ=255)                                                                                                                                                                                ttgCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTa                                                                                                                                                                                           >  1:1261673/1‑105 (MQ=255)                                                                                                                                                                                  gcgcCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATa                                                                                                            >  1:1404514/1‑182 (MQ=255)                                                                                                                                                                                     ccAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGAGCAATCCCCGCAGGAACACACCCGTgggaacccgt                                                  >  2:64407/1‑229 (MQ=255)                                                                                                                                                                                              tGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACt                                                                                                                                                                                                   >  1:917594/1‑84 (MQ=255)                                                                                                                                                                                               gcgcCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGAGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCAAAAAGATACCACAAGCTGGTGCTGGGGGGGAAAATCCCCTGCAGGAAACCACCGGGGGAAAAGGCAAAACCGGCAtt                                       >  1:228374/1‑239 (MQ=255)                                                                                                                                                                                                 cccAAGGCTGAAATAAGGAAAATTGCGGCTCCCCC‑TTTTCATCCCCCCCCCCGGCGGGGAAAAAAAATTAACCGCCACACTCAGCAGTACAAACAAgg                                                                                                                                                                                  <  1:473332/97‑1 (MQ=255)                                                                                                                                                                                                      ggCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGa                                                                                                                               >  1:340101/1‑144 (MQ=255)                                                                                                                                                                                                        gtggaataaGGAAAAGGGGGGCTCACAT‑TGTTCATCCCCCCCCGCGGAGTGAGAACAAAATAAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCa                                <  2:53570/233‑1 (MQ=255)                                                                                                                                                                                                           taataaGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTgg                                                                                                                                                                        >  2:473332/1‑98 (MQ=255)                                                                                                                                                                                                           taataaGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGGGGTCAACCCCTGCAGGGACCCCACGGTGGAAACCGCCTAAGCGGCATTGGCGGCCTTGCt                           >  1:53570/1‑239 (MQ=255)                                                                                                                                                                                                           taataaGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGAAGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCCCCGGGGGAAACGGGAAAAGCGGCATTGGAgg                                  >  1:1307926/1‑232 (MQ=255)                                                                                                                                                                                                             ataaGGCAAATTGCGGATCACCC‑TGTTCATCCCCCACCACGGGGTGGGAACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACca                                                                                                         <  2:114182/159‑1 (MQ=255)                                                                                                                                                                                                                      attggagATCACCC‑TGTGCATCCCCCCCCAGGGGGGGGAAAGAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCt                <  1:244534/233‑1 (MQ=255)                                                                                                                                                                                                                       ttGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTg                                                                                               >  1:114182/1‑159 (MQ=255)                                                                                                                                                                                                                                  cccttttCATCCCCCCCCACGGGGGGGGAAGAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGc                                                   <  1:664666/188‑1 (MQ=255)                                                                                                                                                                                                                                   attGTTCATACCCCCCCGGGGGGTGGGAAAAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGA‑ACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTgccagcca   <  1:923010/237‑1 (MQ=255)                                                                                                                                                                                                                                       ttCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGGGatcatc                                                                                >  1:1135437/1‑159 (MQ=255)                                                                                                                                                                                                                                       ttCATCCCCCCCCGCGGGGTGGAAACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCAc  <  1:324282/237‑1 (MQ=255)                                                                                                                                                                                                                                         cATCCCCCCCCAGGGGGTGGAAAAAAAATAAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAg                                                                                                                                <  2:607386/109‑1 (MQ=255)                                                                                                                                                                                                                                            tCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACa                                                                                                                >  1:86934/1‑122 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                        ATACCGAATCGTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCA‑CCGACCGCCAGAACGGTAAGC‑AAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCT‑TTAACACAGGTCATTATTGTTGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTGCGGATCACAC‑TGTTCATTCCCCACCACGGCGTGGGAACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCAC  >  NC_000913/1174375‑1174836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑