| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,548,925 | 0 | A | C | 25.6% | 166.2 / 12.0 | 83 | G382G (GGT→GGG) | malQ | 4‑alpha‑glucanotransferase (amylomaltase) |
| Reads supporting (aligned to +/- strand): ref base A (35/26); new base C (4/17); total (39/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCACAAACGCAGCATCGACATCACATGGTCAATTCGTAATGCGCCGCAGTTTTGCATATTGGCACGCAACAGCTCGATAAACGGTTCATAGGCACGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGCCAGCCCCAGCGCATTTCGTCC > NC_000913/3548699‑3549147 | accacAAACGCAGCATCGACATCCCATGGTCAATTCGTAACGCGCCGCAGTTTTGCATATTGGCACGCAACAGCTCGATAAAAGGTTCATCGGCACGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAAAGGGCC‑GGGGGAATCCCGCGGCGGGCCCACCGATGGTTTCCGG‑CAACATAGGTCACGGTCACTCCCAGTTTCCGCCCCCACCTTctcttc > 2:198310/1‑233 (MQ=255) cGCAGCATCGACATCACATGGTCAATTCGTAAGGCGCCGCAGTTGTGCATATTTGCACGCAACAGCTCGATAAACGGTTCATAGGCACGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCaa < 1:1286677/235‑1 (MQ=255) tCAATTCGTAATGCGCCGCAGTTTTGCATATTGGCACGCAACAGCTCGATAAACGGTTCATAGGCACGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCCACCCCCAGATCACGATACAAcccca > 1:1073691/1‑236 (MQ=255) tCAATTCGTAATGCGCCACAGTTTTGCATATTGGCACGCAACAGCTCGATAAACGGTTCATAGGCACGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCa < 1:753152/225‑1 (MQ=255) cAATTGGTAAGGCGCCGCGGTTTTGCATTTTGGCGCGCAACAGCTCGATAACCGGTTCATAGGCCCGCGCGGTGATGATAGGCGGGTCCATGGGCGTTAATCCCCAGTTCTGCCCAAACGGGCC‑GGGGATATCCGGCGGCGCGCCACCCGATGCTTTCAGG‑CAATATAGTTCCCGGTCACCCCGGGTTCCCG‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAAt < 2:900583/238‑1 (MQ=255) cGTAAGGCGCCGCATTTTGGCATATTGGCAGGAAACAGCCCGATAACCGGTTAATGGGCACGCGGGGGGATGATGTGCGGGTCCATGGGGGGTAACCCCCAGTTCTCCCCCACCGGGCC‑GGGGATACCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACCCCAGGTTTCCG‑CCCCCCCTTCCCCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGc < 2:1380392/237‑1 (MQ=255) aTGCGCCGCAGTTTTGCATATTGGCACGCAACAGCTCGATAAACGGTTCATAGGCACGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGAAACAAGCCAATCGGCATTT‑Ca > 1:900583/1‑239 (MQ=255) aTGCGCCGCAGTTTTGCATATTGGCACGCAACAGCTCGATAAACGGTTCATAGGCACGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCACTTCTGCCCCAACGGGCC‑GAGGATATCCCGCGGGGCGCCAACCGATGCTTTCAGG‑CCATATAGTTCACGGTCCAACCCGGGTTCCG‑CCCCACCCTCCGCCACGCCAACCGCCCGACCACGCTaacaaa > 2:753152/1‑220 (MQ=255) ccgcgggGTGATGATATGGGGGTCCATGGGCGGTAACCCCCAGTTCTGCCCCACCGGGCC‑GAGGATATCCGGCGGCGCGCCACCCGATGCTTTCAGG‑AAATATAGTTCAGGTTCACCCCAGTTTTCCG‑CCCCCCCTTCCGCTACGCAACCCGCCAGATCACGATACAAGCCAATCGGCATTT‑Ca < 2:871519/183‑1 (MQ=255) aCGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCCACGGGCC‑GAGGAGATCCGGCGGCGCGCCAACCGATGCTTTCCGG‑CAATATAGTTTACGGTCACACCAGGTTTCCC‑CCCCCCCCTCCCCTACGCCAACCGCCAGATCACGATACAAACCCACCCGCATTT‑CCAAGCCCTGGCTTTTCTCCCCCCACGCGGGCAACCTCCTGGAAGCCAGCCAcacac > 2:1295652/1‑235 (MQ=255) cgcgcgGTGATGATATGCGGGTCCATTGGCGGTAATCCCCCGTTCTGCCCCAACGGGGC‑GCGGATATCCGGCGGCCCGCCAACCGATGCTTTCAGG‑CAATATAGTTCCCGGTCACACCAGGGTTCCG‑CCCCCCCTTCCGCTACGCCAACCGCCCGATCACGATACAAGACAATCGGCCTTT‑CATAGACCTGGCTTATCTCCCAGAAGGCGGCAAAATGGCTGTGCGCCAGCCACTGCa > 2:1122517/1‑238 (MQ=255) cgcgcgGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGGTTTGCCCCAAAGGGCC‑GGGGGTATCCGGCGGGGCGCCAACCGATGCTTTCAGG‑CAATATAGGTTACGGTCACACCAGGTTTTCG‑CCCCCCCTTCCGCCACGCCAACCGCCAGATCACGATAAAAGCCAAACGGCATTTCCATA‑CCCTGGCCTATTCCCCCGCCGGCCGCAACATGGCAGTAagccagcc > 2:1235227/1‑232 (MQ=255) gcgcgGTGATGATGGGCGGGCCCATGGGCGGTAATCCCCAGTCCCGCCCCAACGGGCC‑GGGTATATCCGGCGGCGCGCCAACCGATGCTTCCAGG‑CAATATAGTTCAGGGTCACACCAGGTTCCCG‑CCCCCCCTTCCGCTACGCCACCCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAAc < 2:529049/239‑1 (MQ=255) tgatgaTATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCCCACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCa < 1:43312/140‑1 (MQ=255) tgatgaTATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCCCCTTCCGCTACGCCAACCGCCa < 1:721274/147‑1 (MQ=255) atgatATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGGTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCCGGc > 1:871519/1‑184 (MQ=255) taggCGGGTCCATTGGGGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GGGGATACCCGGCGGCGCGCCACCCGAGGCTTTCAGG‑CAATATAGTTCACGGTCACCCCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑Ca < 1:1398300/167‑1 (MQ=255) cGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GGGGATATCCGGCGGCGCGCCCACCGATGCTTTCAGG‑CCATATAGTTCAAGGGCACAACAGGTTTTCG‑CCCCACCTTCCGCCACCCCAACCGCCAGATCACGATa > 2:721274/1‑147 (MQ=255) gggTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACCCCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGAc < 1:1295652/239‑1 (MQ=255) cATTGGCGGTAATCCCCCGTTCTGCCCCCACGGGGC‑GAGGGAAACCCGCGGCGCGCCCACCGATGCTTTTAGG‑CAATATAGTTCACGGTCACACCAGGTTTTCG‑CCCCACCTTCCGCTACCCCCACCGCCCGATCACGATACCAGCCAAACCGCATTT‑CATAGCCCCGGc > 2:1398300/1‑170 (MQ=255) aatgggcgttaTCCCCAGGTCCTCCCCAACCGGCCGGAGAATCTCCGGGGGGGCGCCAACCGTTGCTTTCAGG‑CAATATAGTTCACGGTCACCCCGGGTTCCCC‑CCCCACCTCCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGtca < 2:1140044/228‑1 (MQ=255) ggcggaaccccccATTTCGCCCCAAACGGCCC‑GAGGATACCGGGGGGCGCCCCACCCGATTCTTACAGG‑AAATATAGTTCAGGGCAACACCAGGTTCCCC‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACg < 2:163543/230‑1 (MQ=255) cctattccgcccccAGCGGCCG‑GGGGCTATCGGGGGGCGCGCCAACCGAGCCTTCCAGG‑CAATAAAGTACCCGGTCACCCCGGGTTCCCG‑CCCCCCCTCCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCg < 2:1073691/229‑1 (MQ=255) cAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACAAGAGATAAAAATCGACGTCATACCGATGgtcttaccc > 2:693753/1‑235 (MQ=255) ttCTGCCCCAACGGGCC‑GAGGAAATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGAAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTAGCAGa > 1:816630/1‑238 (MQ=255) tCTGCCCCAACGGCCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCCCGGTCACACCAGGTTTCCG‑CCCCACCTCCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAAc < 1:1284504/239‑1 (MQ=255) tGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAAc < 1:497108/104‑1 (MQ=255) tGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAAc > 2:497108/1‑104 (MQ=255) tGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATc > 2:297895/1‑209 (MQ=255) tGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATc < 1:297895/209‑1 (MQ=255) tGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGa > 2:79654/1‑235 (MQ=255) ccccAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCa > 1:525530/1‑107 (MQ=255) ccccAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCa < 2:525530/107‑1 (MQ=255) ccccAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGAc > 2:1178635/1‑239 (MQ=255) cccAAGGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCCCCCCAGGTTTCCG‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACg < 1:797907/239‑1 (MQ=255) ccaaccGGGCC‑GAGGTTCTCCGGCGGCGCGCCACCCGATGCTTTCAGG‑CAATATATTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACg < 1:1094488/234‑1 (MQ=255) aCGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACCCCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑Ca < 1:473499/131‑1 (MQ=255) aCGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑Ca > 2:473499/1‑131 (MQ=255) aCGGGCC‑GAGGATACCCGGCGGCGCGCCACCCGATGCTTTCAGG‑CAATATAGTCCACGGTCCCCCCAGGTTTCCG‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGc < 2:329080/125‑1 (MQ=255) cc‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTAt > 2:1230596/1‑140 (MQ=255) cc‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTAt < 1:1230596/140‑1 (MQ=255) gATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGc > 1:329080/1‑125 (MQ=255) tatCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATcc < 1:79654/239‑1 (MQ=255) atCCGGCGGCGCGCCACCCGATGCTTTCAGG‑CAATATAGTTCACGGTCACCCCAGGTTTCCG‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCa < 1:582512/239‑1 (MQ=255) tCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGGGAATCCAc > 1:1279384/1‑239 (MQ=255) tCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGAAGCACTTCTGGGGAATCCAc > 1:1027207/1‑239 (MQ=255) cccGGCGCCGCCACACCCTAGGCTTTCAGG‑CAAAAAAGTCAACGGCCACACCAGCTTCCCG‑CCCCCCCTCCCGATCCGCCACCCGCCAGATCACGATACAAGCCAATCGGCa < 2:617804/111‑1 (MQ=255) ggcggcCCCCCACCCGATGCTTTCAGG‑CAATAGAGTTCCCGGTCACCCCAGGTTTCCG‑CCCCCCCTTCCTTTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGtt < 1:1127356/239‑1 (MQ=255) gcggcgCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGt > 1:805939/1‑237 (MQ=255) cggcgCGCCACCCGATGCTTTCAGG‑CAATATAGTTCCCGGTCCCACCAGGTTTCCC‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTc < 1:693753/238‑1 (MQ=255) cggccCCCCACCCGATGCTTCCAGG‑AAATAATGTTCACGGTCCCCCCAGGTTTCCC‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTc < 1:1122517/238‑1 (MQ=255) ggcgCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGt > 1:475866/1‑235 (MQ=255) cggtaacccGTTGTTTTGAGA‑CAATATAGTCAACGGCACCACCGGTTCTCCG‑CCCCTCCTCCCTCTCCGCCACCCGCCAGATCACGATGCAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCATCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATa < 2:1026467/232‑1 (MQ=255) cgcCACCCGATCATTCCAGG‑CATTCTAGTCCGCGGTCACTCCAGGTTCCCG‑CCCCACCTCCCCCTCCGCCACCCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTg < 2:556774/160‑1 (MQ=255) cgcCAACCGATGCTTTCAGG‑CAATATAGTTCAAGGTCCCCCCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGcc > 1:617804/1‑112 (MQ=255) caccggacccttCAGGCCATTATGGTCCCCGGTCACACCGGTTTCCCC‑CCCCCCCTCCCCCTCCCCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACAtc < 2:805939/229‑1 (MQ=255) tGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCCGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAgaga > 1:556774/1‑160 (MQ=255) gCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACAtct > 1:53612/1‑232 (MQ=255) tttCAGG‑CAATATAGTCCCCGGTCACCCCAGGTTTCCC‑CCCCCCCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATg < 1:1018771/239‑1 (MQ=255) ttccAGG‑CAATATATTTCAGGGTCCCCCCAGTTTCCCC‑CCCCCCCTTCCCCTACGCCAACCGCCAGATCACGATACAAGCCAAt < 2:541321/81‑1 (MQ=255) tccAGG‑AAATATATTCCACGGACACACCAGGTTCCCG‑CCCCACCTCCCGCTCCGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGc < 2:1279384/237‑1 (MQ=255) cAATATAGTTCACGTTCACCCCAGTTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCCCTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGcc < 1:198310/238‑1 (MQ=255) tatatgtCACGGTCACCCCAGTTTACCC‑CCCCACCTCCCGCACCGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCa < 2:1256753/199‑1 (MQ=255) tataGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑Ca > 1:541321/1‑84 (MQ=255) ttCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTTCGCCAACCGCCa < 1:613867/50‑1 (MQ=255) ttCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCa > 2:613867/1‑50 (MQ=255) ttCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGccc > 2:579215/1‑85 (MQ=255) ttCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGccc < 1:579215/85‑1 (MQ=255) tCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCa > 2:979621/1‑73 (MQ=255) tCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCa < 1:979621/73‑1 (MQ=255) cACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGCCAGCCCCAgcgc > 2:994825/1‑239 (MQ=255) ggTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATa > 1:1256753/1‑205 (MQ=255) ggTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGCCAGCCCCAGCGCAtt > 2:530459/1‑239 (MQ=255) ggTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGCCAGCCCCAGCGCAtt > 1:104674/1‑239 (MQ=255) tCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCa < 2:804435/67‑1 (MQ=255) tCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCa > 1:804435/1‑67 (MQ=255) cccacaAGGTTCCCC‑CCCCACCTCCCGTAACCCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGCCAGCCCCAGCGCATTTCg < 1:1235227/237‑1 (MQ=255) cacaCCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCCCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGCCAGCCCCAGCGCATTTCg < 1:1178635/239‑1 (MQ=255) tttCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCa > 1:1376296/1‑38 (MQ=255) tttCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCa < 2:1376296/38‑1 (MQ=255) cG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGCCAGCCCCAGCGCATTTCGTcc > 1:1057823/1‑229 (MQ=255) ccACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCa > 2:573833/1‑113 (MQ=255) ccACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCa < 1:573833/113‑1 (MQ=255) | ACCACAAACGCAGCATCGACATCACATGGTCAATTCGTAATGCGCCGCAGTTTTGCATATTGGCACGCAACAGCTCGATAAACGGTTCATAGGCACGCGCGGTGATGATATGCGGGTCCATTGGCGGTAATCCCCAGTTCTGCCCCAACGGGCC‑GAGGATATCCGGCGGCGCGCCAACCGATGCTTTCAGG‑CAATATAGTTCACGGTCACACCAGGTTTCCG‑CCCCACCTTCCGCTACGCCAACCGCCAGATCACGATACAAGCCAATCGGCATTT‑CATAGCCCTGGCTTATCTCCCAGCAGGCGGCAAACTGGCTGTAAGCCAGCCACTGCAACCAGAGATAAAAATCGACGTCATCACGATGTTCTTCGCAGAACTGACGCACTTCTGGTGAATCCACGTTCTGATACATCTCTGGCCATGCAGGCCAGCCCCAGCGCATTTCGTCC > NC_000913/3548699‑3549147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |