Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,665,6980TC30.0% 104.2 / 12.5 51D38G (GAT→GGT) gadXacid resistance regulon transcriptional activator; autoactivator
Reads supporting (aligned to +/- strand):  ref base T (34/1);  new base C (0/15);  total (34/17)
Fisher's exact test for biased strand distribution p-value = 7.11e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGA  >  NC_000913/3665476‑3665920
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                  
aGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGt                                                                                                                                                                                                                  >  1:16574/1‑238 (MQ=255)
  cATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCa                                                                                                                                                                                                               >  1:1102658/1‑238 (MQ=255)
             aGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                                                                                                                                                                   >  1:376718/1‑239 (MQ=255)
                       gttATCCGGCGATGGTTGCGCAACTTCTGAAAAAACAGAATTATTTTTAATACGTGAAGAAACAAGTAAGGAAGAATTTTTTTTAGGGGAATGAAGTTTTAATCCCCCCTCTTTGAGAGGGGGAAAAAAAAAGAAAAGGGTCTCCCTGCCCACAAAAAAAAAATTTCCAACCCATTTTCCTCCTAAATTTTGCTTTACCCCCGAAAAACCAGGTCCACCGCCATTAAAATAGCGATAtt                                                                                                                                                                                         <  2:1358820/238‑1 (MQ=255)
                                cGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                                                                                                                                                                   >  1:417990/1‑220 (MQ=255)
                                 gATGGTAGCGCAACGTACTAAAAAACAGTAATACCTCTACGACAGAGAAGAACGTGTAAAGAAGAATCTTTTTTATGTGAATAAGTATTTAACCCCCCCTCCTTGAGCATGGGGAAAAAAAAAGAAACCGTGTCCCTGGACACAAATAAAAAATTTACAACCCATTTATCTACTGGATTTTGGTTTCCACCCCAAAAACCCGGGCCACCGCCATTAAAATAGCGATATTCACCATTAAc                                                                                                                                                                               <  2:84939/239‑1 (MQ=255)
                                         gcgaattttcagAAAAACAAGAATTTTCTCTATCACAGAGAAGAACGAGTAAAGAAGAATTTTTTTTATGTACATAAATTTTTAACCCCTCCCCCTGGAGCATGGGGAAAAAAAATAAAGGCGTGCCCCTGGACAAAAAAAAAAAATTTCCAACACACTTATCTACTAAATTTTGGTTTGCACCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                                                                                                                                                         <  2:1045192/227‑1 (MQ=255)
                                          gcAACTACCTAAAAAACAGAAATATCTCTACTACATTAATGAACGAGTAATGAAGAATTTTTTTTAGGTGAATGAAGATTTACTGCCTCCTCCTTGAGAATCGGAAAAAATAATGAATGCGTCTCCCTGAACACAAATAAAAAATTTACACCTCACTTTTCTCCTAAATTTTGGCTTCCACCAAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTga                                                                                                                                                                       <  2:1014739/238‑1 (MQ=255)
                                                tCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatata                                                                                                                                                                >  2:1244405/1‑239 (MQ=255)
                                                  aagAAAAACAGAAATATCTCTTGTACAGGAGAGAAAGAGTAATGAAGATTCTTTTTTATGTACAGAAATATTAAATCCCCCCTCCTGGAGAATCGGAAAAAAAAAGGAAAGCGTGTCCCTTGACACAAAAAAAAAATTTTCAACACACTTATCTTCTCAATTTTGCTTTCCCCCAAAAAAACCGGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                                                                                                                                                                    <  2:1013457/231‑1 (MQ=255)
                                                            ggAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                                                                                                          >  1:1013457/1‑233 (MQ=255)
                                                                     tctACAAGAGTAATAAAGGAGAAAAAAAAAAATTTTTTTAGGTAAATGAAGTTTAAGCCCCCCCTCCTTGAGCAGGGGGAAAAAAAAGGAAAGCGTGTCCCTTGACAGAAAAAAAAATTTTCCACCCCTCTTATCAACTAGATTGTGGCTTGCATCCAAAAAACCAGGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATa                                                                                                                                                 <  2:245129/234‑1 (MQ=255)
                                                                      ctactaCAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                               >  1:1273108/1‑219 (MQ=255)
                                                                      ctactaCAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                               >  1:620142/1‑219 (MQ=255)
                                                                        acaaaggTGATGAGCGAGTAATGAAGAAATTTTTTGATGTGCAAGAAGATTTAATGCCCCCTCCTGGAGAATGGGAAAAAAAAATAAAAGCGTCTCCCTTAACACGAATACAAAATTTTCAACACCCTTATCTACACGATTTGGTCTTGCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa                                                                                                                                         <  2:16574/233‑1 (MQ=255)
                                                                            cAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                               >  1:1160697/1‑213 (MQ=255)
                                                                               tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                                                                                               >  1:22462/1‑210 (MQ=255)
                                                                               tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                                                                                                          >  1:564805/1‑215 (MQ=255)
                                                                               tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa                                                                                                                                       >  1:245129/1‑234 (MQ=255)
                                                                               tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAt                                                                                                                                   >  1:262831/1‑238 (MQ=255)
                                                                               tgatgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTAAGTCTTGCATACGCAATTAGACAAt                                                                                                                                   >  1:1183618/1‑238 (MQ=255)
                                                                                 atgaACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTc                                                                                                                                 >  2:1164540/1‑238 (MQ=255)
                                                                                     aaCGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCAt                                                                                                                             >  1:635893/1‑239 (MQ=255)
                                                                                                                       ataTTTAACCCCTCCTCCTAGAGAATCGGGAGAAATAAGAAAAGCGTGGCCATAGACAAGAATAAAAAATTTCAAACCCACTCTTCTACAAAAATTTGACGGCCACCCAAAAAAACGAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACg                                                                                                                                               <  2:480422/185‑1 (MQ=255)
                                                                                                                               ccccccctcctTGAGCATGGGAAAAAAAAATAAAGGCGTTCCCTTTACCACAAATAAAAAATTTCCAACCCATTTATTTACTCGATTTTGGCTTCCACCCAAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                                                                                      <  2:692600/183‑1 (MQ=255)
                                                                                                                                      tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATAtt                                                                                    >  2:119238/1‑231 (MQ=255)
                                                                                                                                         ttGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg                                                                                                                            >  1:692600/1‑188 (MQ=255)
                                                                                                                                            aGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTCCTCGCATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaa                                                                                                                                                                                                    >  1:886019/1‑113 (MQ=255)
                                                                                                                                            aGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCa                                                                                                                 >  1:11513/1‑196 (MQ=255)
                                                                                                                                              cATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTa                                                                    >  1:805548/1‑239 (MQ=255)
                                                                                                                                                 cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                                                                                                    >  2:417177/1‑80 (MQ=255)
                                                                                                                                                 cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCAt                                                                                                                                                                                                                                    <  1:417177/80‑1 (MQ=255)
                                                                                                                                                 cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa                                                                                                                                       >  1:614739/1‑169 (MQ=255)
                                                                                                                                                  gggAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGa                                                                                                                                       >  1:566496/1‑168 (MQ=255)
                                                                                                                                                      aaaaTAATGAAAGCGTTCCCCTTGACACAAAAACAAATTTTACAACACTCTTTTCAACTCAAATTTGCTCTGCACCCACAAAAACCAGGACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCAcgccg                                                            <  2:376718/238‑1 (MQ=255)
                                                                                                                                                       aaaTAAAAAAGGCGTCTCCCTTACCCAAAAAAAAAATTTTCCAACCCCCTTACCTACTAGATTTTGGCTTCCACCCAAAAAACCCGGGCCACCGCCATTAAAATAGCGATATTCAcc                                                                                                                                                                                     <  2:810637/117‑1 (MQ=255)
                                                                                                                                                            atGAAATCGTGTCCCGTCAAAATAAAAAAAAATTTACAACACCTTTATCAACTGAAGTGTGTCTTCCACCCGCAAACACCAGGTGACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGa                                                                                                                      <  2:495030/175‑1 (MQ=255)
                                                                                                                                                                  cgtgtttCCCTGGACACAAAAAAAAAATTCACAACCCACTTATCTACTAGATTTGGGCTTGCACCAGAAAAAACCGGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa                                                                                                                                    <  2:1242468/150‑1 (MQ=255)
                                                                                                                                                                  aGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATg                                                                                                                                                                           >  1:810637/1‑117 (MQ=255)
                                                                                                                                                                       gtCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGCCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGtt                                                                                                            >  1:495030/1‑175 (MQ=255)
                                                                                                                                                                            ttGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa                                                                                                                          >  1:1242468/1‑156 (MQ=255)
                                                                                                                                                                                                         acTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTttat                                                                           >  1:352360/1‑176 (MQ=255)
                                                                                                                                                                                                           ttATCTATGCGAATTGGGCTTGCAACCGAAAAAACCAGGACGCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATCACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGaa          <  1:911502/239‑1 (MQ=255)
                                                                                                                                                                                                           tatacatcTCGATTTGTGCTTGAACCCCAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGgag            <  1:1286002/230‑1 (MQ=255)
                                                                                                                                                                                                             aTCTACTTGATTTTGCCTTGCACCCGAAAACCCAGGGACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAat                                                                                                    <  2:1248897/147‑1 (MQ=255)
                                                                                                                                                                                                                tcagagAATTGGGCGTGCACCCAAAAAAACCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGga     <  2:262831/234‑1 (MQ=255)
                                                                                                                                                                                                                   tCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                                                                                                                                                                   >  1:723845/1‑46 (MQ=255)
                                                                                                                                                                                                                   tCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAattgatt                                       >  1:6970/1‑202 (MQ=255)
                                                                                                                                                                                                                   tCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGgatga  >  2:216841/1‑239 (MQ=255)
                                                                                                                                                                                                                     gAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATa                                                                                                                                                                                                 >  1:467978/1‑46 (MQ=255)
                                                                                                                                                                                                                     gAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGCCAAATTGATTGTTAAATAACTTTAAACGAAGCGGTAGAAAAGgatga  >  2:1286002/1‑237 (MQ=255)
                                                                                                                                                                                                                       aTTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTa                                                                                                >  1:1108885/1‑141 (MQ=255)
                                                                                                                                                                                                                       aTTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATaaa                                                                                          >  1:1248897/1‑147 (MQ=255)
                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                  
AGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGA  >  NC_000913/3665476‑3665920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: