| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,429,984 | 0 | T | G | 35.8% | 175.5 / 25.4 | 81 | L41V (TTG→GTG) | cycA | D‑alanine/D‑serine/glycine transporter |
| Reads supporting (aligned to +/- strand): ref base T (8/44); new base G (29/0); total (37/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.75e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGC > NC_000913/4429766‑4430213 | ccTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑GCGTTGGTGCTGGGGTGTTTAT‑TGGGGTT‑GGccca > 1:1224579/1‑236 (MQ=255) tCCCGATACAGACTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCTTTGGTGCCGGGGTGTTTTT‑TGGGGCC‑GGCAAAAAGA‑ATAGCCCTGcc > 2:890407/1‑239 (MQ=255) gATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCACTTGGAAGGGGGTGTTTTT‑TGGGTCT‑GGCAAAACGA‑GTAACCTTTCCGGGGCgcc > 2:664614/1‑235 (MQ=255) ttCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCg < 1:664614/233‑1 (MQ=255) cgtcgtATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCAt < 2:1829188/239‑1 (MQ=255) tCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCaa < 1:402228/202‑1 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑GCCTTGGTACGGGGGGGTTTTT‑TGGGTGT‑GGCGAAAAAC‑ATAGCCTTGCCCGGGCGGCGGGCATTTTTGTTTTTATAAtaa > 2:2266463/1‑237 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCCTTTGGTCGGGGGTGTTTTT‑GGGGGTT‑GGGCAAACGA‑TTAGCCTTGCCGGGGCGGCGATCCTTTTTGttttt > 2:353271/1‑230 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCCTTGGTACGGGGGTGTTTTT‑TGGGGCT‑GGCAAAACCA‑ATAGCCTTTCCGGGCCGTCGGTCATTTTTGTTTATTTGATCa > 1:1199157/1‑239 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTATGGGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtata < 1:958918/234‑1 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCggg < 1:1300369/211‑1 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGG‑G‑TCCTTTGTACGGGggtgg > 2:260682/1‑175 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGG‑G‑CCCTTTGGACGGGGGTGTTTTT‑GGGGGTT‑GGGAAAAAGagttgc > 2:402228/1‑197 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGG‑G‑CCATTTGTAAGGGGGTGTTTTT‑TGGGTCT‑GGGAAAAAGA‑TTAACCCTGCCGGGCCGTCGGTCAtttttggtttt > 1:1207324/1‑225 (MQ=255) actAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGG‑G‑CCATTGGGACGGGGGGGTTTTT‑GGGGGTG‑GGCAAAAAGA‑TTAGCCTTTCCGGGGCGGCGATTATTTTTGTTTTTTTGAGCa > 2:1124770/1‑239 (MQ=255) ctAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAt < 1:303737/179‑1 (MQ=255) ctAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATg < 1:353271/234‑1 (MQ=255) ctAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATAGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCAt < 2:369617/239‑1 (MQ=255) gTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGG‑CCTTTGGTAGGGGGTGTTTTTG‑GGGGGTT‑TGCAAAAAGATTTAGCCTTTCCGGGCGCTGGTTCATTTT‑GTTTttattaattattgg > 2:958918/1‑225 (MQ=255) gTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑GCCCTTTGGAAGGGGGTGGTTTTG‑GGGGTTG‑GGCAAAAC‑A‑TTAAGCCTGCCGGGGCGGCGGTCa > 2:1300369/1‑211 (MQ=255) tAGAGCCTGAACAACACAGACAGGGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTa > 1:1839680/1‑239 (MQ=255) tAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGG‑G‑CCATTGGGACGGGGGTGGTTTT‑TGGGGCT‑GGc > 2:303737/1‑179 (MQ=255) agCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTa < 1:843603/165‑1 (MQ=255) aacaacACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGAt < 1:772936/199‑1 (MQ=255) aacaacACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCg < 1:1492878/207‑1 (MQ=255) acaacaCAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCCTTGGTACGTGGGTTTTTTT‑TGGGTGT‑GGCAAAACAA‑TTAGCCTTGCCTGGGCGTGGGTCTTTTTTGCTTTTATTATTATTGGGTTTTTTTCTCtttttt > 2:2289391/1‑238 (MQ=255) acacAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGG‑G‑GCATTGGTAAGGGGGTGTTTTT‑GGGGGCT‑gg > 2:843603/1‑165 (MQ=255) gTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCAtttt < 1:319972/191‑1 (MQ=255) tACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGgttg > 1:685435/1‑140 (MQ=255) tACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGgttg < 2:685435/140‑1 (MQ=255) tACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGgt < 1:1107141/138‑1 (MQ=255) gaagaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTTCGGGGGTTTTTTT‑GGGGTTT‑GGCAAAAAGA‑ATAGCCTTGCCGGGGCGGCGATCATTTTCGTTTATATGAGCATT‑GGGTTTATGTTCTTTTTTGTGTGTCGGGCAATGGGGGa > 2:2055246/1‑239 (MQ=255) aagaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg < 1:2289391/234‑1 (MQ=255) agaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCCTTTGTACGGGGGTGTTTTT‑GGGGTCT‑GGCAAAAAGA‑TTAGCCTTGTCGGGGCGTCGATCATTTTTGTTTTTATGTTCATT‑TGTTTTTTTCTCTTTTTTGTGATTCGGGGCATGGGGGGAt > 2:2070019/1‑239 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCCTTGGTACGGGGGTGTTTAT‑GGGGGCT‑GGCCAAAAGA‑TTAGCCTTGCCGGGGCGGCGATCATTTTTGTTTatatt > 2:319972/1‑190 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCaa < 1:1376870/148‑1 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGAAAAACGA‑TTAGCCTTGCCGGGCCGTCGa < 1:925333/174‑1 (MQ=255) aaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCCTTTGGACGGGGGTGttttttgg > 2:1107141/1‑133 (MQ=255) ggTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCCTTGGGAAGGGGGTGTTTAT‑TGGGGCTGGGCAAAACAA‑tagc > 2:1376870/1‑145 (MQ=255) ggTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGAt < 1:177071/210‑1 (MQ=255) gTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGc < 1:1866437/138‑1 (MQ=255) gTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCg < 1:1087854/145‑1 (MQ=255) tAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGGACGGGGGTGTTTAT‑GGGGGCT‑GGCCAAAAGA‑TTAGCCTTCCCGGGCCGTCGATCATTTTTGTTTTTATGATCATT‑GGTTTTTTGTTCTTTTTCGTTATGCGGGCAATGGGGGAAATGCTGCTTTTGAATCTGGAAttc > 2:1031659/1‑237 (MQ=255) aaaaGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATAc < 1:1124770/238‑1 (MQ=255) aaaaGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACa < 1:2245556/239‑1 (MQ=255) aaaGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACaa < 2:1839680/239‑1 (MQ=255) aaaGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACaa < 1:2070019/239‑1 (MQ=255) ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑TCCTTGGGCCGGGGTGGTCTAT‑GGGGGCT‑GGCAAAAAGA‑ATAGGCCTTCCGGGTCGGCGTTCATTTTCGGTTATATGCTCATT‑TGGTTTTTTCTCTTTTTTGTGATGGGGGCATTGTGGGGATTGCGGTTTTCTTATCTGGCATACAAAACtttt > 2:418314/1‑239 (MQ=255) ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGGACGGGGGTGTTTTT‑GGGGGCT‑GGCAAAACGA‑TTAGCCTTGCCgggg > 2:1866437/1‑137 (MQ=255) ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGG‑G‑CCCTTTGGACGGGggtgtt > 2:2053295/1‑103 (MQ=255) ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGG‑G‑CCATTGGTAAGGGGGTGTTTTT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTTCCCGGCCGGCGAt > 2:1087854/1‑145 (MQ=255) atCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtata < 1:1704336/150‑1 (MQ=255) cTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGTCATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCtt < 1:744860/237‑1 (MQ=255) cTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCt < 1:890407/236‑1 (MQ=255) ggCTGAACAGTCGTTCCGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTGCGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGcc < 2:2292598/115‑1 (MQ=255) ggCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCCTTGGGACGGGGGTGTTTAT‑TGGGGCT‑GGCAAAAAGA‑TTAGCCTTGCCGGGGCGGCGGTCATTTTCGTTTTTATTATCAtttg > 2:1704336/1‑148 (MQ=255) cTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAg < 1:1331260/106‑1 (MQ=255) gAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACt < 1:2055246/239‑1 (MQ=255) tCGCTACGGCGCAATCTCCCAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑GCCTTGAAACGGGGGCGGTTTT‑TGGGGCT‑GGCAAAAAGG‑ATAGCCTTTTCGGGGCggagg > 1:2292598/1‑111 (MQ=255) cGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCggg < 1:1031659/236‑1 (MQ=255) gCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTTGGACGGGGGTGTTTTT‑GGGGGCT‑GGCAAAACGA‑ATAGCCTTTCCcgg > 2:1331260/1‑106 (MQ=255) aCGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTggg < 1:2266463/239‑1 (MQ=255) cgcAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑gggg < 1:2239773/72‑1 (MQ=255) cgcAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑gggg > 2:2239773/1‑72 (MQ=255) tcACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGgt < 1:1356711/54‑1 (MQ=255) aaCCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCggg < 2:1895262/87‑1 (MQ=255) aCCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGc < 1:2060259/239‑1 (MQ=255) cATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCt < 2:364746/235‑1 (MQ=255) ttCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGGACGGGGGTGTTTTT‑GGGGGCT‑GGCAAAACGA‑TTAGCCTTTCCGGGCCGTCGGTCa > 1:1895262/1‑87 (MQ=255) aGCTTATTGCCATTGGCGGT‑G‑CCATTGGGACGGGGGTGTTTAT‑GGGGTCT‑GGCAAAACCA‑TTAGCCTTTCCGGGCCGTCGGTCATTTTTTTTTATATGATCCTT‑GGTTTTTTTCTCTTTTTTGTGATGTGGGGCATGGGGGGAATTCTGCTTTTTAATCTGGGATACAAAACTTTTTTTGACTTCGCTTCCGATTTATTTCGGCCGGGGGGAGGAAATTTTACCCGCCGGGCTTa > 2:1978387/1‑235 (MQ=255) cTTATTGCCATTGGCGGT‑G‑CCATTTGTACGGGGGTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGGTTTTTGCTCTTTTTTGTGATGCGGGCAATGGGGGGATTGCTGCTTTCTAATCTGGAATACAAAACTTTTTATGACTTCGCTTCCGGTTTACTCGGGCCGTGGGGAGGATATTTTACCCGCCgggattaattgtt > 2:1633320/1‑228 (MQ=255) ttGCCATTGGCGGT‑G‑CCATTGGTACGGTGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTctgc < 1:2326065/239‑1 (MQ=255) tGCCATTGGCGGT‑G‑CCATTGGTACGGGGGTGTTTTT‑GGGGTTT‑GGCAAAAAGA‑TTAGCCTTTGCGGGGCGGCGATCATTTTTGTTTTTATGATCATT‑TGTTTTTTTCTCTTTTTTGTGATGCGGGGAATGGGGGGATTGCTGCTTTTGAAATTGGGATACAAAACTTTTAGGGACTTCGCTTCCGATTTTATCGGGGCGTGGGGAGGGTATTTCTCCCGCTGGGATTTCTGGTTttggt > 2:242048/1‑237 (MQ=255) ccATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCaa < 1:387981/46‑1 (MQ=255) ccATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAg < 1:1739771/55‑1 (MQ=255) ccATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCAt < 1:798589/94‑1 (MQ=255) ccATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTg < 1:220078/152‑1 (MQ=255) ccATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTg < 1:2214948/220‑1 (MQ=255) ttGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCaa > 1:1210490/1‑43 (MQ=255) ttGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCaa < 2:1210490/43‑1 (MQ=255) t‑G‑CCCTTGGTACGGGGGTGTTTTT‑GGGGGCT‑GGCAAAACGA‑TTTGCCTTTCCGGGCCGTCGGTCATTTTTGTTTTTATTATCATT‑TGTTTTTTTCTCTTTTTTGTGATGGGGGGCATGGGGGGATTGCTGCTTTTGAATCTGGAATACAAATCTTTTATTGACTTCTCTTTCGATTTACTCGGGCCGTGGGGAGGGTATTTTACCGGCTGGGCTTACTgg > 2:2214948/1‑220 (MQ=255) t‑G‑CCATTGGGACGGGGGTGTTTTT‑TGGGGCT‑GGCAAAACGA‑TTAGCCTTGCCGGGGCGGCGGTCCTTTTTGTTTTTATGATCATT‑GGTTTTTTg > 2:798589/1‑94 (MQ=255) ggTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGc < 1:1633320/239‑1 (MQ=255) ggggTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGc > 2:1922286/1‑196 (MQ=255) ggggTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGc < 1:1922286/196‑1 (MQ=255) ggggTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTctgct > 1:1906234/1‑215 (MQ=255) ggggTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTctgct < 2:1906234/215‑1 (MQ=255) | CCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACA‑‑GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGT‑G‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCT‑GGCAAAACGA‑TTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATT‑GGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGC > NC_000913/4429766‑4430213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |