BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1468681	NA (NA)	124 (1.400) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	12/108	9.1	NA	noncoding (560/1331 nt)	IS2	repeat region
*	?	NC_000913	1650843 =	NA (NA)	124 (1.400) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	12/108	9.1	NA	noncoding (1/706 nt)	IS2	repeat region
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 123 total aligned reads displayed.

AGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTT  >  NC_000913/1650745‑1650940

aGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCt                                                                                                   <  2:63192/99‑1 (MQ=255)

aGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCt                                                                                                   >  1:2045658/1‑99 (MQ=255)

   acacTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATg                                                                                                <  1:1751844/99‑1 (MQ=255)

    cacTGAAAATTCAACGGGAAAAATCTGCCCGATCATTGCTGCCATTCATCGCGAATACAAGCAGCCATGGAACACACTGGATGACGTACTGGCCTATgg                                                                                               <  2:651371/99‑1 (MQ=255)

     gcTGAAAATTCAGCAGGAAAAATCAGCCCGGTCATCGCTGCCAATCATCGCGAATACAAGCAGACATGGAAAACATTGGCTGGCGACCTGGCCTATggg                                                                                              >  2:1835828/2‑99 (MQ=255)

     acTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATggg                                                                                              >  1:1530489/1‑99 (MQ=255)

     acTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATggg                                                                                              >  1:1830522/1‑99 (MQ=255)

      cTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgc                                                                                             <  2:1771087/99‑1 (MQ=255)

      cTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgc                                                                                             <  2:3287023/99‑1 (MQ=255)

       tGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATCCAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcg                                                                                            >  1:1332539/1‑99 (MQ=255)

       tGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGgcg                                                                                            >  1:786367/1‑99 (MQ=255)

         aaaaTTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCgct                                                                                          >  2:1086799/1‑99 (MQ=255)

            aTTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCGATGGGCgctgct                                                                                       >  1:802894/1‑99 (MQ=255)

              tCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTc                                                                                     <  1:1809615/99‑1 (MQ=255)

                aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                   <  2:3994866/99‑1 (MQ=255)

                aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                   >  2:3703115/1‑99 (MQ=255)

                aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGc                                                                                   <  1:1666154/99‑1 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                  <  2:3330476/99‑1 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                  <  1:3352374/99‑1 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                  <  1:2403795/99‑1 (MQ=255)

                 aCAGGAAAAATCAGCCCGGTCAGTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                  <  1:2892028/99‑1 (MQ=255)

                   aGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGa                                                                                >  2:3387460/1‑99 (MQ=255)

                    ggAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGAc                                                                               >  1:1391290/1‑99 (MQ=255)

                    ggAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGAc                                                                               >  1:2344748/1‑99 (MQ=255)

                     gAAAAATCAGCCCGGTTTTTGCTGCCATTAATCGCGAATACACGCAGACATGGAAAAAACTGGCTTACGCTCTGGTCTATGGGCGCTGCTTCGCAGTCa                                                                              >  2:1437412/1‑99 (MQ=255)

                     gAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACa                                                                              >  1:1558704/1‑99 (MQ=255)

                     gAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACa                                                                              >  2:826075/1‑99 (MQ=255)

                      aaaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTCTGGGCGCTGCTTCGCAGACAg                                                                             >  2:2454145/1‑99 (MQ=255)

                       aaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAgg                                                                            >  2:2278268/1‑99 (MQ=255)

                       aaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAgg                                                                            <  2:1306456/99‑1 (MQ=255)

                       aaaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAgg                                                                            <  1:2288904/99‑1 (MQ=255)

                        aaaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGc                                                                           <  2:135999/99‑1 (MQ=255)

                         aaTCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCa                                                                          <  2:1270209/99‑1 (MQ=255)

                            cAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGaa                                                                       <  2:3322581/99‑1 (MQ=255)

                            cAGCCCGGTCAGGGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGaa                                                                       <  2:162670/99‑1 (MQ=255)

                              gctcGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACt                                                                     >  2:1032684/4‑99 (MQ=255)

                              gCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACt                                                                     <  2:555627/99‑1 (MQ=255)

                              gCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACt                                                                     >  2:2798696/1‑99 (MQ=255)

                               cccGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACtt                                                                    <  1:3277032/99‑1 (MQ=255)

                               cccGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACtt                                                                    <  1:2311583/99‑1 (MQ=255)

                                ccGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTg                                                                   >  1:3597803/1‑99 (MQ=255)

                                ccGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTg                                                                   <  2:3697305/99‑1 (MQ=255)

                                 cGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGa                                                                  <  1:7879/99‑1 (MQ=255)

                                 cGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGa                                                                  >  1:805000/1‑99 (MQ=255)

                                   gTCATTGCTGGCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTAGGCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGacg                                                                <  2:2968932/99‑3 (MQ=38)

                                    tCATTGCTGCCATCCATCGCGAATACAAGCAGACATGGAAAACACTGGACGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATgg                                                               <  1:3722900/99‑1 (MQ=255)

                                      aTTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTa                                                             >  1:3340224/1‑99 (MQ=255)

                                          ctgcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGcc                                                         >  1:416247/1‑99 (MQ=255)

                                          ctgcCATTCATCGCGAATACAAGCACACATGGAAAACACTGGATGACGAACTGGCCTCTGGTCGCTGCCTCGCATCCCGGCAGTACTCGACATTATGcc                                                         >  2:1441507/1‑99 (MQ=255)

                                           tgcCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCt                                                        <  2:2195661/99‑1 (MQ=255)

                                             ccATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGc                                                      >  2:3071405/1‑99 (MQ=255)

                                             ccATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGc                                                      <  2:3290252/99‑1 (MQ=255)

                                             ccATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGc                                                      <  1:115358/99‑1 (MQ=255)

                                                ttCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGAt                                                   <  2:110026/99‑1 (MQ=255)

                                                 tCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATc                                                  >  1:1776288/1‑99 (MQ=255)

                                                   aTCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCaa                                                <  1:2939366/99‑1 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGTCAGGCAGAACTTGATGGTATGCCCGCGATCAAt                                               <  2:3741196/99‑1 (MQ=255)

                                                    tCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                               >  1:1646168/1‑99 (MQ=255)

                                                      gcgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCCGCGATCAATGc                                             >  2:3318101/1‑99 (MQ=255)

                                                       cgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGcc                                            >  2:2698394/1‑99 (MQ=255)

                                                         aaTACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCaa                                          >  1:2333023/1‑99 (MQ=255)

                                                           tACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAGAc                                        <  1:3174274/99‑1 (MQ=255)

                                                           tACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAAc                                        <  2:1949966/99‑1 (MQ=255)

                                                            aCAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACATGCAGAACTTGATGGTATGCCTGCGATCAACGCCAAACg                                       >  1:3945028/1‑99 (MQ=255)

                                                              aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                     <  2:1020510/99‑1 (MQ=255)

                                                              aaGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACgtg                                     >  2:2620987/1‑99 (MQ=255)

                                                                gCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGtt                                   >  1:2328006/1‑99 (MQ=255)

                                                                gCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGtt                                   <  2:595851/99‑1 (MQ=255)

                                                                gCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGtt                                   >  2:1670631/1‑99 (MQ=255)

                                                                 cAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGttt                                  >  1:2814358/1‑99 (MQ=255)

                                                                   gACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTAc                                >  1:2440733/1‑99 (MQ=255)

                                                                    aCATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTAcc                               >  2:593878/1‑99 (MQ=255)

                                                                      aTGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCgg                             >  1:667467/1‑99 (MQ=255)

                                                                       tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            >  1:3431408/1‑99 (MQ=255)

                                                                       tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            >  2:3223887/1‑99 (MQ=255)

                                                                       tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            >  2:2207213/1‑99 (MQ=255)

                                                                       tGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGa                            >  1:1197692/1‑99 (MQ=255)

                                                                        ggAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGAt                           <  1:379637/99‑1 (MQ=255)

                                                                          aaaaCACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCa                         >  2:3438520/1‑99 (MQ=255)

                                                                           aaaCACTGGATGACGAACTGGCCTATGGGCGCTACTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCAt                        >  1:2276463/1‑99 (MQ=255)

                                                                               acTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgcgc                    <  2:788809/99‑1 (MQ=255)

                                                                               acTGGATGACGAACTGGCCTATGGGCGCTGCTGCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCCTgcgc                    >  2:2407646/1‑99 (MQ=255)

                                                                                cTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGcc                   <  2:2907136/99‑1 (MQ=255)

                                                                                   gATGACGAACTGGCCTAGGGGCGCTGCTTCGCAGACAGGGAGAACGTTATGGTATGCCTGCGATCAATACCGAACGTGTTTCCCGGATCAGGCGCCAGa                >  2:449632/1‑99 (MQ=17)

                                                                                    aTGACTAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGaa               >  2:764026/1‑99 (MQ=255)

                                                                                     tGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAAt              >  2:684129/1‑99 (MQ=255)

                                                                                     tGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAAt              >  2:682530/1‑99 (MQ=255)

                                                                                      gACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATg             >  1:2226771/1‑99 (MQ=255)

                                                                                       aCGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTTTGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgc            >  2:1204015/1‑99 (MQ=255)

                                                                                        cGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGGGATCAATGCCAAACGTGTGTCCCGGAGCCTGCGCCAGACTgcg           >  2:855775/1‑99 (MQ=14)

                                                                                        cGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATgcg           <  2:2874340/99‑1 (MQ=255)

                                                                                            cTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGt       <  1:1838611/99‑1 (MQ=37)

                                                                                               gCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc    <  2:3083813/99‑1 (MQ=33)

                                                                                               gCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc    <  1:1156388/99‑1 (MQ=33)

                                                                                               gCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCGGTTGc    >  2:1353922/1‑99 (MQ=18)

                                                                                               gCCTATGGGAGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGc    >  1:3612401/1‑99 (MQ=18)

                                                                                                ccTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCt   <  2:689959/99‑1 (MQ=32)

                                                                                                 cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtt  >  2:2056111/1‑99 (MQ=31)

                                                                                                 cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtt  >  2:1939609/1‑99 (MQ=31)

                                                                                                 cTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtg  >  1:4132440/1‑98 (MQ=14)

AGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTT  >  NC_000913/1650745‑1650940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.