BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	174 [0]	[0] 176	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	158 (1.070)	90/180	0.2	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913	1979279 =	0 (0.000)	158 (1.070)	90/180	0.2	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 174 total aligned reads displayed.

TACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCC  >  NC_000913/1978406‑1978600

tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                  >  1:373364‑M1/1‑97 (MQ=255)

 aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                 <  2:6937‑M1/99‑4 (MQ=255)

 aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                 >  1:581612‑M1/1‑96 (MQ=255)

   tCGTCACTACACGCACATACAACGGCGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                               >  1:333237‑M1/1‑94 (MQ=255)

   tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                               <  1:2292462‑M1/99‑6 (MQ=255)

   tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                               >  1:1903601‑M1/1‑94 (MQ=255)

   tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGAAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                               <  2:3374771‑M1/99‑6 (MQ=255)

     gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                             <  1:1115706‑M1/99‑8 (MQ=255)

     gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                             <  2:1478260‑M1/99‑8 (MQ=255)

     gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                             >  2:1816102‑M1/1‑92 (MQ=255)

     gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                             <  1:2356866‑M1/99‑8 (MQ=255)

      tCACTACACGCACATACAACGGAGGGGGGCTGCGACTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatacgtc                                                                                            <  2:3422371‑M1/99‑9 (MQ=255)

        aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcat                                                                                          >  2:25626‑M1/1‑89 (MQ=255)

         cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                         >  1:264700‑M1/1‑88 (MQ=255)

          tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTTAACATAAATGtataagtcatcc                                                                                        >  2:1394999‑M1/1‑87 (MQ=255)

          tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                        >  2:2967688‑M1/1‑87 (MQ=255)

          tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                        <  1:2715186‑M1/99‑13 (MQ=255)

            cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactt                                                                                      >  2:2986146‑M1/1‑85 (MQ=255)

             acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                     >  1:970091‑M1/1‑84 (MQ=255)

              cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                    <  1:1258814‑M1/99‑17 (MQ=255)

              cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                    <  1:1748966‑M1/99‑17 (MQ=255)

                 acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                 >  1:1516056‑M1/1‑80 (MQ=255)

                 acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                 <  2:3155134‑M1/99‑20 (MQ=255)

                  caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                >  1:655776‑M1/1‑79 (MQ=255)

                    tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                              >  1:3350936‑M1/1‑77 (MQ=255)

                     aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                             <  1:2711721‑M1/99‑24 (MQ=255)

                     aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                             <  1:157949‑M1/99‑24 (MQ=255)

                     aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                             <  1:2414199‑M1/99‑24 (MQ=255)

                     aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                             <  2:3505459‑M1/99‑24 (MQ=255)

                      cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATACATGtataagtcatacttttgttttggg                                                                            <  1:2431183‑M1/99‑25 (MQ=255)

                       aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                           <  1:599413‑M1/99‑26 (MQ=255)

                       aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                           >  1:1753289‑M1/1‑74 (MQ=255)

                       aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                           >  1:2281827‑M1/1‑74 (MQ=255)

                        aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                          >  1:3867577‑M1/1‑73 (MQ=255)

                         cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAGTGtataagtcatacttttgttttgggtgt                                                                         <  2:1870072‑M1/99‑28 (MQ=255)

                         cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgt                                                                         >  2:3495276‑M1/1‑72 (MQ=255)

                            aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt                                                                      <  1:2533797‑M1/99‑31 (MQ=255)

                             ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                     <  2:3209078‑M1/99‑32 (MQ=255)

                             ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                     <  2:3806546‑M1/99‑32 (MQ=255)

                                    tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                              >  2:2738201‑M1/1‑61 (MQ=255)

                                    tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                              >  2:3807772‑M1/1‑61 (MQ=255)

                                    tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                              >  2:2616476‑M1/1‑61 (MQ=255)

                                     gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                             >  1:3679371‑M1/1‑60 (MQ=255)

                                        aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaa                                                          >  2:532951‑M1/1‑57 (MQ=255)

                                         ttttCAATAATGCGTGATTCAGATCACACAAAACACTCAATTACTTAACATAAATGtataattcaaactttttttttgagtgtatatcaatctggtaaa                                                         >  2:2010189‑M1/1‑56 (MQ=255)

                                           ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                       <  2:2986910‑M1/99‑46 (MQ=255)

                                           ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                       <  2:2241770‑M1/99‑46 (MQ=255)

                                           ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                       >  1:2003759‑M1/1‑54 (MQ=255)

                                            tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                      <  2:2297192‑M1/99‑47 (MQ=255)

                                             cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagt                                                     <  2:3558507‑M1/99‑48 (MQ=255)

                                               ataatGCGTGATGCAGATCACACAAAACACGCAATTACTTAACATAAATGtataagtcatactctaggttttggtgtatttcaatcttctaaaaagttt                                                   >  2:445735‑M1/1‑50 (MQ=255)

                                                 aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                 <  1:583753‑M1/99‑52 (MQ=255)

                                                  atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                <  1:146519‑M1/99‑53 (MQ=255)

                                                   tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                               <  1:2777673‑M1/99‑54 (MQ=255)

                                                   tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                               <  2:2640623‑M1/99‑54 (MQ=255)

                                                   tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcaaacttttgttttgggtgtatttcaatctgtgaaaaagtttttcg                                               <  2:3016028‑M1/99‑54 (MQ=255)

                                                        gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                          >  1:863259‑M1/1‑41 (MQ=255)

                                                         aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                         <  1:1629844‑M1/99‑60 (MQ=255)

                                                           gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                       >  1:3175547‑M1/1‑38 (MQ=255)

                                                           gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                       >  2:989019‑M1/1‑38 (MQ=255)

                                                             aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                     <  2:2178232‑M1/99‑64 (MQ=255)

                                                              gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                    >  1:2990472‑M1/1‑35 (MQ=255)

                                                              gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                    <  1:3009592‑M1/99‑65 (MQ=255)

                                                              gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                    >  2:2500902‑M1/1‑35 (MQ=255)

                                                               aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                   >  2:1350335‑M1/1‑34 (MQ=255)

                                                               aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                   <  1:3223329‑M1/99‑66 (MQ=255)

                                                                tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                  >  1:3655067‑M1/1‑33 (MQ=255)

                                                                 cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                 >  2:3121238‑M1/1‑32 (MQ=255)

                                                                  acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                >  1:871916‑M1/1‑31 (MQ=255)

                                                                  acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                >  1:1207072‑M1/1‑31 (MQ=255)

                                                                  acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                >  2:1126746‑M1/1‑31 (MQ=255)

                                                                   cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                               >  2:1503207‑M1/1‑30 (MQ=255)

                                                                   cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                               >  1:1330717‑M1/1‑30 (MQ=255)

                                                                    acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                              >  1:3790481‑M1/1‑29 (MQ=255)

                                                                    acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                              >  2:648681‑M1/1‑29 (MQ=255)

                                                                      aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                            <  1:1563943‑M1/99‑73 (MQ=255)

                                                                          cacTCAATTACTTAACAGAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                        <  2:211201‑M1/99‑77 (MQ=255)

                                                                             tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                     >  2:2352889‑M1/1‑20 (MQ=255)

                                                                             tCAATTACTTAACATAAATGtataagtcatacttatgttgtgggtgtatttcaatctgttaaaaagtttttctctacgctagcaagcaaaaatgaaaca                     >  1:2963531‑M1/1‑20 (MQ=255)

                                                                               aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                   <  1:2505200‑M1/99‑82 (MQ=255)

                                                                               aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                   >  2:3938088‑M1/1‑18 (MQ=255)

                                                                               aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                   >  1:2866213‑M1/1‑18 (MQ=255)

                                                                               aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                   >  1:1076748‑M1/1‑18 (MQ=255)

                                                                               aaTTACTTAACATAAATGtataagtcatactttcgctttgggtgtatttcaatctgttaaaaagtttttcgctaccctagcaagcaaaaatgaaacagg                   >  1:2866212‑M1/1‑18 (MQ=255)

                                                                               aaTTACTTAACATAAATGtataagtcataattttgttttgggtgtattttaatctgttaaaaagtttttcgatatgctagcaagaaaaaatgaaacagg                   >  2:236195‑M1/1‑18 (MQ=255)

                                                                                aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                  >  1:2197538‑M1/1‑17 (MQ=255)

                                                                                  tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaat                >  2:1300888‑M1/1‑15 (MQ=255)

                                                                                    cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa              >  1:2998317‑M1/1‑13 (MQ=255)

                                                                                    cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa              >  1:465868‑M1/1‑13 (MQ=255)

                                                                                    cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcaagcaagaaaaaatgaaacaggaataa              <  2:1777910‑M1/99‑87 (MQ=255)

                                                                                       aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg           >  2:3287483‑M1/1‑10 (MQ=255)

                                                                                         cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa         >  2:1464515‑M1/1‑8 (MQ=255)

                                                                                         cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa         <  2:2847148‑M1/99‑92 (MQ=255)

                                                                                          aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa        >  1:2503682‑M1/1‑7 (MQ=255)

                                                                                          aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa        >  2:2633824‑M1/1‑7 (MQ=255)

                                                                                           tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat       <  1:1844085‑M1/99‑94 (MQ=255)

                                                                                           tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat       <  1:1600641‑M1/99‑94 (MQ=255)

                                                                                            aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg      >  1:2022902‑M1/1‑5 (MQ=255)

                                                                                               tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga   <  1:916718‑M1/99‑98 (MQ=255)

                                                                                                gtataagtcatacttttgttttgggtgtatgtcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat  <  2:2890764‑M1/99‑99 (MQ=255)

TACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCC  >  NC_000913/1978406‑1978600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`