| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3959502 = | 61 (1.500) | 6 (0.160) | 7/272 | 2.3 | 9.9% | intergenic (+57/+30) | ilvC/ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| ? | NC_000913 | 3959529 = | 54 (1.450) | intergenic (+84/+3) | ilvC/ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCAGGAGAAGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3959661‑3959502‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagaaggccttgCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCG > NC_000913/3959529‑3959678 TGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCTGGA < 1:207749/150‑1TGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCAGGAG < 1:223371/151‑1TGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCAGGAG < 2:402135/151‑1TGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCAGGAG < 2:530399/151‑1TGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCAGGAG < 2:536340/151‑1TGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCAGGAG < 2:569931/151‑1 AATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCAGGAGAA > 1:204090/1‑151 GTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCCGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG > 2:492896/1‑151 CCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCG > 2:236171/1‑151 TCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTT > 1:253788/1‑151 TTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTAT > 1:276859/1‑151 ACCGCAACTAATAGCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAA > 1:126319/1‑151 ACTAATAGCCCGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCAT > 1:248855/1‑149 GCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCG > 1:143783/1‑151 GCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCG > 2:442575/1‑151 TGAATTCCGCCAGGGTCAGATGGTTCCGGCGTTCGATAAAGTGGTTTTCTCTTGTCCGGTACTGGAGCCGACCGGCCCGCTGCACACCCAGTTCGGATATCACATCATTAAGGTGCTGTACCGCAACTAATAGCAAGGCCTTCTCCAGGAGAAGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3959661‑3959502‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagaaggccttgCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCAGTACCGGACAAGAGAAAACCACTTTATCGAACGCCGGAACCATCTGACCCTGGCGGAATTCACCTAAATCACCGCCGCG > NC_000913/3959529‑3959678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |