New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3060398 =	32 (0.790)	6 (0.160)	6/282	2.6	14.8%	coding (646/894 nt)	argP	transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
	?	NC_000913	3060457 =	39 (1.010)					coding (705/894 nt)	argP	transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
Rejected: Frequency below cutoff threshold.

TTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCATGATGCGTAAAGTCACTGATG  >  NC_000913/3060308‑3060605                                                                                                                                                      |                                                                                                                                                     ttACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCAACAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGcacca                                                                                                                                                     >  1:376725/1‑151 (MQ=255)   tcgttgaaatagcccaggcgttaagtcaatcagttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtggtgccctggcgagcaagttgtacgaacgcttctgaagaattaacgatatggcagggcaccacc                                                                                                                                                   <  2:248844‑M2/4‑1 (MQ=255)        aaGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACctgctg                                                                                                                                              <  1:474457/151‑1 (MQ=255)        aaGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACctgctg                                                                                                                                              <  1:254800/151‑1 (MQ=255)           cgcCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATTGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTa                                                                                                                                            <  1:276186/150‑1 (MQ=255)             ccAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGa                                                                                                                                         <  1:465521/151‑1 (MQ=255)               cccaggcgttaagtcaatcagttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtggtgccctggcgagcaagttgtacgaacgcttctgaagaattaacgatatggcagggcacCACCTGCTGTATGa                                                                                                                                         <  1:263239‑M2/14‑1 (MQ=255)                gTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATc                                                                                                                                       >  1:612279/1‑150 (MQ=255)                ccaggcgttaagtcaatcagttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtggtgccctggcgagcaagttgtacgaacgcttctgaagaattaacgatatggcagggcacCACCTGCTGTATGATcc                                                                                                                                      <  1:483062‑M2/17‑1 (MQ=255)                 tGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCGTATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGAt                                                                                                                                        <  1:221873/148‑1 (MQ=255)                 tGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGAt                                                                                                                                        <  2:343165/148‑1 (MQ=255)                 tGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGAt                                                                                                                                        <  1:34369/148‑1 (MQ=255)                   ggcgttaagtcaatcagttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCg                                                                                                                                    <  1:51103‑M1/78‑1 (MQ=255)                               atcagttcaccgctggccagctctttctcgatttgcaggtgcgggatcatacagcaggtggtgccctggcgagcaagttgtacgaacgcttctgaagaattaacgatatggcagggcacCACCTGCTGTATGATCCCGCACCTGCAAATCg                                                                                                                       <  2:427305‑M2/32‑1 (MQ=255)                                aTCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCga                                                                                                                      >  2:484083/1‑151 (MQ=255)                                       cGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAagag                                                                                                               >  1:495678/1‑151 (MQ=255)                                         atatGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAagag                                                                                                               >  2:505307/1‑149 (MQ=255)                                         atatGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAagag                                                                                                               >  1:26113/1‑149 (MQ=255)                                             ggccagctctttctcgatttgcaggtgcgggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGc                                                                                                          <  1:4683‑M1/104‑1 (MQ=255)                                             gCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGc                                                                                                          >  1:15865/1‑150 (MQ=255)                                              gccagctctttctcgatttgcaggtgcgggatcatacagcaggtggtgccctggcgagcaagttgtacgaacgcttctgaagaattaacgatatggcagggcacCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGcc                                                                                                         <  1:4683‑M2/46‑1 (MQ=255)                                              cACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGcc                                                                                                         <  2:81960/150‑1 (MQ=255)                                                       tttttGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAAc                                                                                               <  1:327774/151‑1 (MQ=255)                                                           cgatttgcaggtgcgggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGAt                                                                                           <  2:427305‑M1/119‑1 (MQ=255)                                                                       tCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGcc                                                                               <  1:288242/151‑1 (MQ=255)                                                                        cgggatcatacagcaggtggtgccctggcgagcaagttgtacgaacgcttctgaagaattaacgatatggcagggcacCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGcc                                                                               <  1:51103‑M2/72‑1 (MQ=255)                                                                          ggatcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTgg                                                                            <  1:483062‑M1/134‑1 (MQ=255)                                                                             tcatacagcaggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTggg                                                                           <  1:263239‑M1/135‑1 (MQ=255)                                                                                  ccAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTc                                                                    <  1:478987/151‑1 (MQ=255)                                                                                  ccAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTc                                                                    <  2:615062/151‑1 (MQ=255)                                                                                       ggtgGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAacga                                                               <  2:248844‑M1/147‑1 (MQ=255)                                                                                                CTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGctc                                                      >  1:597324‑M1/1‑151 (MQ=255)                                                                                                  GCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTa                                                    <  2:450689‑M1/151‑1 (MQ=255)                                                                                                     atatCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTg                                                 <  1:39938/151‑1 (MQ=255)                                                                                                         cGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCAc                                             <  2:26113/151‑1 (MQ=255)                                                                                                         cGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCAc                                             <  1:618577/151‑1 (MQ=255)                                                                                                               ttcttcAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCttt                                       >  1:149691/1‑151 (MQ=255)                                                                                                                 cttcAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTg                                      >  2:172199/1‑150 (MQ=255)                                                                                                                 cttcAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTg                                      >  2:185949/1‑150 (MQ=255)                                                                                                                 cttcAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTg                                      >  1:196349/1‑150 (MQ=255)                                                                                                                 cttcAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTg                                      >  2:518290/1‑150 (MQ=255)                                                                                                                 cttcAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTg                                      >  1:509827/1‑150 (MQ=255)                                                                                                                 cttcAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCATTg                                      >  2:92102/1‑150 (MQ=255)                                                                                                                       aaGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTcc                                  <  1:35018/148‑1 (MQ=255)                                                                                                                          cGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGaaa                             <  1:495112/150‑1 (MQ=255)                                                                                                                          cGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGaa                              <  1:244152/149‑1 (MQ=255)                                                                                                                             tCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCg                         >  2:89661/1‑151 (MQ=255)                                                                                                                              cGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCg                         >  1:131373/1‑150 (MQ=255)                                                                                                                               gTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCa                       >  2:463679/1‑151 (MQ=255)                                                                                                                                  cAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCatga                    <  2:571377/151‑1 (MQ=255)                                                                                                                                  cAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCatga                    >  1:148509/1‑151 (MQ=255)                                                                                                                                   aaCTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAATTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCatgat                   >  2:406937/1‑151 (MQ=255)                                                                                                                                           cGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCATGATGCGTAAAg           >  1:258870/1‑151 (MQ=255)                                                                                                                                                     cCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCATGATGCGTAAAGTCACTGATg  >  2:31788‑M2/2‑150 (MQ=255)                                                                                                                                                     cCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCATGATGCGTAAAGTCACTGATg  >  1:123986‑M2/2‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TTACTGAAAGCGCCAGTGGTCGCGTTTGACCATCTTGACGATATGCACCAGGCCTTTTTGCAGCAAAACTTCGATCTGCCTCCAGGCAGCGTGCCCTGCCATATCGTTAATTCTTCAGAAGCGTTCGTACAACTTGCTCGCCAGGGCACCACCTGCTGTATGATCCCGCACCTGCAAATCGAGAAAGAGCTGGCCAGCGGTGAACTGATTGACTTAACGCCTGGGCTATTTCAACGACGGATGCTCTACTGGCACCGCTTTGCTCCTGAAAGCCGCATGATGCGTAAAGTCACTGATG  >  NC_000913/3060308‑3060605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.