New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3529405	43 (1.060)	9 (0.240)	9/278	1.9	17.5%	coding (58/402 nt)	hslR	ribosome‑associated heat shock protein Hsp15
	?	NC_000913	= 3529461	45 (1.180)					coding (114/402 nt)	hslR	ribosome‑associated heat shock protein Hsp15
Rejected: Frequency below cutoff threshold.

CGCCGCCTGATCCCCTCGCTAATGTGAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAAGAGAC  >  NC_000913/3529311‑3529610                                                                                                                                                       |                                                                                                                                                      cgccgcCTGATCCCCTCGCTAATGTGAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTAc                                                                                                                                                       <  2:85627/151‑1 (MQ=255)              ccTCGCTAATGTGAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGgcagcgcg                                                                                                                                          <  1:180276/151‑2 (MQ=255)                   cTAATGTGAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagc                                                                                                                                      >  1:127016‑M2/1‑133 (MQ=255)                   cTAATGTGAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCaa                                                                                                                                      <  2:569384/150‑1 (MQ=255)                      aTGTGAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCg                                                                                                                                  >  2:609429/1‑151 (MQ=255)                        gtgAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAg                                                                                                                                >  2:553910/1‑151 (MQ=255)                         tgAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagccattta                                                                                                                                >  2:255447‑M2/1‑127 (MQ=255)                            aGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCaaa                                                                                                                            >  1:49292/1‑151 (MQ=255)                             ggAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCaaaa                                                                                                                           >  1:461442/1‑151 (MQ=255)                                         aaaGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagccatttatccagtcgaacctcaac                                                                                                               >  1:155317‑M2/1‑111 (MQ=255)                                           agagAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAAt                                                                                                             >  2:446676/1‑151 (MQ=255)                                             agaAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagccatttatccagtcgaacctcaacag                                                                                                             >  2:208797‑M2/1‑107 (MQ=255)                                                        gTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCAct                                                                                                 >  2:598184/1‑150 (MQ=255)                                                         ttGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCActc                                                                                                <  1:174269/150‑1 (MQ=255)                                                               ttCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGcc                                                                                          <  1:202093/150‑1 (MQ=255)                                                               ttCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGcc                                                                                          <  1:285873/150‑1 (MQ=255)                                                                   aCTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAggg                                                                                      <  2:206590/150‑1 (MQ=255)                                                                   aCTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGa                                                                                     <  1:280621/151‑1 (MQ=255)                                                                    cTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagccatttatccagtcgaacctcaacagcaggtttctctttcatggcgtctcc                                                                                    >  1:121799‑M2/1‑84 (MQ=255)                                                                      ggATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAAt                                                                                  >  2:101416/1‑151 (MQ=255)                                                                         tAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagccatttatccagtcgaacctcaacagcaggtttctctttcatggcgtctccttcac                                                                               >  2:205602‑M2/1‑79 (MQ=255)                                                                          aaaTGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACg                                                                              <  1:520080/151‑1 (MQ=255)                                                                          aaaTGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACg                                                                              <  1:233971/151‑1 (MQ=255)                                                                            aTGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGaa                                                                            <  2:194386/151‑1 (MQ=255)                                                                               gCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCaa                                                                                                                                      <  1:502633/90‑1 (MQ=255)                                                                               gCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCaa                                                                                                                                      >  2:502623/1‑90 (MQ=255)                                                                               gCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACg                                                                          >  1:279236/1‑150 (MQ=255)                                                                               gCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACg                                                                          >  2:336386/1‑150 (MQ=255)                                                                                cTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagccatttatccagtcgaacctcaacagcaggtttctctttcatggcgtctccttcacattagc                                                                         >  2:119186‑M2/1‑72 (MQ=255)                                                                                 tATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagccatttatccagtcgaacctcaacagcaggtttctctttcatggcgtctccttcacattagcga                                                                       >  2:525645‑M2/1‑71 (MQ=255)                                                                                          cccGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTg                                                               <  1:22636/150‑1 (MQ=255)                                                                                              tttttATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTaaa                                                           <  1:343368/150‑1 (MQ=255)                                                                                               ttttATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAgg                                                         <  2:73850/151‑1 (MQ=255)                                                                                               ttttATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAgg                                                         <  1:187351/151‑1 (MQ=255)                                                                                                 ttATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCg                                                       <  1:115665/151‑1 (MQ=255)                                                                                                  tataAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGa                                                      >  1:447782/1‑151 (MQ=255)                                                                                                  tataAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGa                                                      >  2:543196/1‑151 (MQ=255)                                                                                                       aaCCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACaacgggcagcccatagccatttatccagtcgaacctcaacagcaggtttctctttcatggcgtctccttcacattagcgaggggatcaggcggcggtagtca                                                 >  1:200273‑M2/1‑49 (MQ=255)                                                                                                           cgcgcgCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAAc                                             <  2:337291/151‑1 (MQ=255)                                                                                                           cgcgcgCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAAc                                             <  1:202423/151‑1 (MQ=255)                                                                                                           cgcgcgCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAAc                                             <  1:6773/151‑1 (MQ=255)                                                                                                           cgcgcgCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAAc                                             <  1:588508/151‑1 (MQ=255)                                                                                                                     cccGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGcc                                    >  2:279451/1‑150 (MQ=255)                                                                                                                     cccGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGcc                                    >  1:169483/1‑150 (MQ=255)                                                                                                                         tGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGc                                >  2:609504/1‑150 (MQ=255)                                                                                                                                          gTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGc               <  2:528835/150‑1 (MQ=255)                                                                                                                                               gTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATg         >  1:132189/1‑151 (MQ=255)                                                                                                                                               gTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATg         >  1:475187/1‑151 (MQ=255)                                                                                                                                                  cATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAag      <  1:146289/151‑1 (MQ=255)                                                                                                                                                  cATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAag      <  1:352447/151‑1 (MQ=255)                                                                                                                                                    ttACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAagag    >  2:325528/1‑151 (MQ=255)                                                                                                                                                      aCAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAAgaga   >  1:28392/1‑150 (MQ=255)                                                                                                                                                      aCAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAAgaga   >  1:102848/1‑150 (MQ=255)                                                                                                                                                      aCAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGAAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAAGAGAc  <  2:357650/151‑1 (MQ=255)                                                                                                                                                      aCAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACACACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAAGAGAc  <  1:162030/151‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                      CGCCGCCTGATCCCCTCGCTAATGTGAAGGAGACGCCATGAAAGAGAAACCTGCTGTTGAGGTTCGACTGGATAAATGGCTATGGGCTGCCCGTTTTTATAAAACCCGCGCGCTGGCCCGTGAAATGATTGAAGGCGGTAAGGTGCATTACAACGGGCAGCGCAGCAAGCCGAGCAAAATCGTCGAGCTGAATGCCACGCTCACTCTGCGCCAGGGAAATGACGAACGCACGGTGATTGTAAAGGCGATTACTGAACAGCGTCGCCCCGCCAGCGAGGCAGCCTTGCTGTATGAAGAGAC  >  NC_000913/3529311‑3529610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.