New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 326549 =44 (0.810)8 (0.160) 8/276 2.7 16.0% coding (699/1671 nt) betA choline dehydrogenase, a flavoprotein
?NC_000913 326652 = 43 (0.840)coding (596/1671 nt) betA choline dehydrogenase, a flavoprotein
Rejected: Frequency below cutoff threshold.

TATCAAACTCCGCCAGCAGTTCAGCGTTGCCGACGCCGGAGCGTTGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAA  >  NC_000913/326401‑326698
                                                                                                                                                    |                                                                                                                                                     
ccaaacccggcgtcaatccgctgtttgaagcgatgattgaagcgggcgtgcaggcgggctacccgcgcacggacgatctcaacggttatcagcaggaaggttttggtccgatggatcgcaccgtcacgccgcagggccgtcgcgccagCAc                                                                                                                                                     >  2:44082‑M1/149‑151 (MQ=255)
ccaaacccggcgtcaatccgctgtttgaagcgatgattgaagcgggcgtgcaggcgggctacccgcgcacggacgatctcaacggttatcagcaggaaggttttggtccgatggatcgcaccgtcacgccgcagggccgtcgcgccagCAc                                                                                                                                                     >  2:59024‑M1/149‑151 (MQ=255)
ccaaacccggcgtcaatccgctgtttgaagcgatgattgaagcgggcgtgcaggcgggctacccgcgcacggacgatctcaacggttatcagcaggaaggttttggtccgatggatcgcaccgtcacgccgcagggccggcgcgccagCa                                                                                                                                                      <  1:27115‑M1/2‑1 (MQ=255)
  aaacccggcgtcaatccgctgtttgaagcgatgattgaagcgggcgtgcaggcgggctacccgcgcacggacgatctcaacggttatcagcaggaaggttttggtccgatggatcgcaccgtcacgccgcagggccgtcgcgccagCACcg                                                                                                                                                   >  2:283596‑M1/147‑151 (MQ=255)
    acccggcgtcaatccgctgtttgaagcgatgattgaagcgggcgtgcaggcgggctacccgcgcacggacgatctcaacggttatcagcaggaaggttttggtccgatggatcgcaccgtcacgccgcagggccgtcgcgccagCACcgcg                                                                                                                                                 >  2:863681‑M1/145‑151 (MQ=255)
                              cGACGCCGGAGCGTTGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATc                                                                                                                       <  1:371335/151‑1 (MQ=255)
                                         cGTTGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                                                                             <  1:248722/150‑1 (MQ=255)
                                         cGTTGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                                                                             <  1:445515/150‑1 (MQ=255)
                                         cGTTGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                                                                             <  1:513134/150‑1 (MQ=255)
                                         cGTTGCAGGATCTGCGGTGAGGCAATCGCGCCGGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCg                                                                                                             <  1:223014/150‑1 (MQ=255)
                                           ttGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGa                                                                                                          >  2:42562/1‑151 (MQ=255)
                                           ttGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGa                                                                                                          >  2:411743/1‑151 (MQ=255)
                                           ttGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGa                                                                                                          >  2:831853/1‑151 (MQ=255)
                                            tGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGTGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAg                                                                                                         >  2:310898/1‑151 (MQ=255)
                                               gtgcaggcgggctacccgcgcacggacgatctcaacggttatcagcaggaaggttttggtccgatggatcgcaccgtcacgccgcagggccgtcgcgccagCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTa                                                                                                       <  2:113751‑M1/49‑1 (MQ=255)
                                                 gATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTa                                                                                                       <  1:498873/148‑1 (MQ=255)
                                                 gATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGa                                                                                                    >  2:830303/1‑151 (MQ=255)
                                                 gATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGa                                                                                                    >  2:551762/1‑151 (MQ=255)
                                                 gATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGa                                                                                                    >  2:14525/1‑151 (MQ=255)
                                                 gATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGa                                                                                                    >  2:117236/1‑151 (MQ=255)
                                                 gATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGa                                                                                                    >  1:843501/1‑151 (MQ=255)
                                                 gATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGa                                                                                                    >  1:38942/1‑151 (MQ=255)
                                                      gCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGt                                                                                               >  1:126769/1‑151 (MQ=255)
                                                      gCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGt                                                                                               >  1:61029/1‑151 (MQ=255)
                                                         gTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAg                                                                                            >  1:77540/1‑151 (MQ=255)
                                                              gCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGtt                                                                                         <  1:745594/149‑1 (MQ=255)
                                                                 aTCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGAc                                                                                    <  1:789132/151‑1 (MQ=255)
                                                                          gCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTgg                                                                           >  1:259052/1‑151 (MQ=255)
                                                                            tctcaacggttatcagcaggaaggttttggtccgatggatcgcaccgtcacgccgcaggaccgtcgcgccagCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGc                                                                          <  2:197982‑M1/78‑1 (MQ=255)
                                                                            acaTAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGcc                                                                         <  1:82093/151‑1 (MQ=255)
                                                                             ctcaacggttatcagcaggaaggttttggtccgatggatcgcacctccacgccgcagggccttcgcgccagCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGGGAGTACGAATGGTCAGGTTAGGACGCGATTTGGc                                                                          <  2:421899‑M1/78‑1 (MQ=255)
                                                                              aTAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGGTTGCCGGCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGcc                                                                         <  1:728203/149‑1 (MQ=255)
                                                                               tAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGACGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGa                                                                      >  2:720083/1‑151 (MQ=255)
                                                                                  cAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCg                                                                   >  2:489191/1‑151 (MQ=255)
                                                                                       cttcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATa                                                              >  1:343897/1‑151 (MQ=255)
                                                                                       cttcttTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATa                                                              >  1:613168/1‑151 (MQ=255)
                                                                                              gttgGCCGGTGCGCGGGTTGGGATGGAGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTAAACACTGATGGGATCGGTACTAGCGTGAGTACGCATGGTCCGCTTACTACGCGCTATGGACTGATCGAGATAGcctag                                                        >  1:589852/1‑147 (MQ=255)
                                                                                                   gttttggtccgatggatcgcaccgtcacgccgcagggccgtcgcgccagCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGCGATAGCCACGCGCGGt                                                  <  2:59995‑M1/102‑1 (MQ=255)
                                                                                                    cGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTg                                                 <  1:752970/151‑1 (MQ=255)
                                                                                                      ttGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGc                                                <  2:38942/150‑1 (MQ=255)
                                                                                                      ttGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAACGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGc                                                <  2:311596/150‑1 (MQ=255)
                                                                                                             ggTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGa                                        >  1:869814/1‑151 (MQ=255)
                                                                                                             ggTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGa                                        >  1:652974/1‑151 (MQ=255)
                                                                                                                 gggATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACgg                                     >  1:252552/1‑150 (MQ=255)
                                                                                                                  ggATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGc                                    >  1:298549/1‑150 (MQ=255)
                                                                                                                        tGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTgcgg                             <  2:343899/151‑1 (MQ=255)
                                                                                                                        ccgtcacgccgcagggccgtcgcgccagCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTgcgg                             <  1:167747‑M1/123‑1 (MQ=255)
                                                                                                                            gTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTg                         >  2:748436/1‑151 (MQ=255)
                                                                                                                              cgccgcagggccgtcgcgccagCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGa                        <  1:481137‑M1/128‑1 (MQ=255)
                                                                                                                              cGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGAc                       <  1:326537/151‑1 (MQ=255)
                                                                                                                                ccTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGAc                       <  2:545180/149‑1 (MQ=255)
                                                                                                                                ccTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGAc                       >  1:545174/1‑149 (MQ=255)
                                                                                                                                       gCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGAt               >  2:383459/1‑150 (MQ=255)
                                                                                                                                           ttCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCAt           >  2:324629/1‑150 (MQ=255)
                                                                                                                                           ttCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCAt           >  1:665101/1‑150 (MQ=255)
                                                                                                                                              cgccagCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGa       <  2:434014‑M1/145‑1 (MQ=255)
                                                                                                                                                   gCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCaaa  <  2:182940‑M1/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TATCAAACTCCGCCAGCAGTTCAGCGTTGCCGACGCCGGAGCGTTGCAGGATCTGCGGTGAGGCAATCGCGCCTGCACATAACAGCACTTCTTTGTTGGCCGTTGCGCGGGTTGGGATGGTGCTGTCGCCTTCCAGCCATTCGACGCCCACCGCGCGTTTGCCGTCAAAAATGATGTGATCGGTCATAGCGTGAGTACGAATGGTCAGGTTAGGACGCGATTTGGCCTGATCGAGATAGCCACGCGCGGTGCTGGCGCGACGGCCCTGCGGCGTGACGGTGCGATCCATCGGACCAAA  >  NC_000913/326401‑326698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.