New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 388065539 (0.710)6 (0.120) 6/276 3.3 14.9% coding (567/1074 nt) recF gap repair protein
?NC_000913 = 3880717 32 (0.630)coding (505/1074 nt) recF gap repair protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

TCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAA  >  NC_000913/3880506‑3880801
                                                                                                                                                     |                                                                                                                                                  
tCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGc                                                                                                                                                   <  1:310827/151‑1 (MQ=255)
tCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGc                                                                                                                                                   <  1:414258/151‑1 (MQ=255)
     aTTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGAtt                                                                                                                                              >  2:577066/1‑151 (MQ=255)
           ttCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTc                                                                                                                                         >  1:310468/1‑150 (MQ=255)
           ttCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTc                                                                                                                                         >  2:860595/1‑150 (MQ=255)
                   ccTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCgg                                                                                                                                <  2:518587/151‑1 (MQ=255)
                   ccTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCgg                                                                                                                                >  2:178766/1‑151 (MQ=255)
                              tCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCtt                                                                                                                     <  2:742778/151‑1 (MQ=255)
                                 gTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTAt                                                                                                                  >  2:351458/1‑151 (MQ=255)
                                 gTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTAt                                                                                                                  >  1:567495/1‑151 (MQ=255)
                                    tctTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATccc                                                                                                               <  1:577060/151‑1 (MQ=255)
                                     ctTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGctc                                                                                                                       <  1:96120/142‑1 (MQ=255)
                                     ctTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGctc                                                                                                                       >  2:96120/1‑142 (MQ=255)
                                                ccGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGc                                                                                                    <  2:827456/150‑1 (MQ=255)
                                                ccGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCt                                                                                                   <  1:537124/151‑1 (MQ=255)
                                                       ggAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTa                                                                                            >  1:779585/1‑151 (MQ=255)
                                                       ggAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTa                                                                                            >  1:691024/1‑151 (MQ=255)
                                                       ggAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTa                                                                                            >  1:779583/1‑151 (MQ=255)
                                                         aaaGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAAc                                                                                          <  1:259800/151‑1 (MQ=255)
                                                                   tCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCAcc                                                                                  <  1:352500/149‑1 (MQ=255)
                                                                                   gagaAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACAGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCCCGGGCGTAGCTGTTCGTAACGTGTCACCTGgcgcgcggagtatag                                                                 <  1:61544/150‑12 (MQ=255)
                                                                                    agaAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGgcgcgcggagtatagc                                                                <  1:442858/150‑13 (MQ=255)
                                                                                      aaaTTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGgcgcgcggagtatagcgc                                                              <  2:425458/150‑15 (MQ=255)
                                                                                      aaaTTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTgcgc                                                             <  1:814408/151‑1 (MQ=255)
                                                                                        aTTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTgcg                                                              >  1:215530/1‑148 (MQ=255)
                                                                                              tACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAg                                                     <  1:476743/151‑1 (MQ=255)
                                                                                                   gTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAAt                                                 <  2:691031/150‑1 (MQ=255)
                                                                                                         gCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTga                                          >  2:825802/1‑151 (MQ=255)
                                                                                                             tatCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGAtt                                      >  2:626673/1‑151 (MQ=255)
                                                                                                                      cgATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGc                             <  2:347219/151‑1 (MQ=255)
                                                                                                                      cgATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGc                             <  2:52074/151‑1 (MQ=255)
                                                                                                                      cgATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCACTTGAGATTGCTCCAgg                              <  2:800589/150‑1 (MQ=255)
                                                                                                                              gcgcTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGaaaa                     >  2:51502/1‑151 (MQ=255)
                                                                                                                              gcgcTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGaaaa                     >  2:540240/1‑151 (MQ=255)
                                                                                                                                gcTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAAt                   >  2:775060/1‑151 (MQ=255)
                                                                                                                                gcTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAAt                   >  2:511982/1‑151 (MQ=255)
                                                                                                                                gcTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAAt                   >  1:121692/1‑151 (MQ=255)
                                                                                                                                   ataCTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCg                >  2:90689/1‑151 (MQ=255)
                                                                                                                                         cgcgcgCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCGCGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCg          <  1:858622/151‑1 (MQ=255)
                                                                                                                                             cgcCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTtgt      >  2:223433/1‑151 (MQ=255)
                                                                                                                                              gcCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTtgtg     >  2:383955/1‑151 (MQ=255)
                                                                                                                                                 aGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGaaa  >  1:514969/1‑151 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
TCAAAATTACGTTCCAGCACCTCAGCATATTCTGTCTCTTTCTCCCAGCCGCGCTGGAAAGAGAAAGTCAGAGAAAACTCAGGGAGAAATTGCTTACAGGTATCAGCCATATCGGCCGCGATACCGGCGCTATACTCCGCGCGCCAGGTGCTGATTTGCTCCGCCAGCGGGATCAGCTCTTTATCCCACGGGCGTAGCTGTTCGTAACGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAA  >  NC_000913/3880506‑3880801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.