New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1285349	22 (0.500)	6 (0.150)	6/282	2.6	20.8%	coding (211/711 nt)	narJ	molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1
	?	NC_000913	= 1285396	25 (0.610)					coding (258/711 nt)	narJ	molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1

ATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTA  >  NC_000913/1285200‑1285488                                                                                                                                                      |                                                                                                                                            aTCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCG                                                                                                                                             >  2:295220‑M1/1‑150 (MQ=255)    aacaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCa                                                                                                                                          >  2:667581/1‑150 (MQ=255)             tGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGtt                                                                                                                                >  2:412425/1‑151 (MQ=255)                 tGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTg                                                                                                                            <  1:335460/151‑1 (MQ=255)                         ttGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACa                                                                                                                    <  1:294871/151‑1 (MQ=255)                                       aaTCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAAt                                                                                                      >  2:653567/1‑151 (MQ=255)                                            gCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCcg                                                                                                  >  2:497818/1‑150 (MQ=255)                                                          cccATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAgg                                                                                    >  2:253105/1‑150 (MQ=255)                                                          cccATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAgg                                                                                    >  1:399503/1‑150 (MQ=255)                                                           ccATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggt                                                                                  >  2:451352‑M2/1‑139 (MQ=255)                                                             aTGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAt                                                                                <  1:255199/151‑1 (MQ=255)                                                                          tttCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgt                                                                   >  2:145445‑M2/1‑124 (MQ=255)                                                                              cTGCGCGGTTTAGCGGCGATGGGTCCGCTCGATGCCCGGGCGCAGTACAGCGAACTGTTCGACCGGGGCAGCGCCACGTCGCAGGTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactg                                                               >  1:125586‑M2/1‑120 (MQ=255)                                                                               tGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactgc                                                              >  2:635572‑M2/1‑119 (MQ=255)                                                                                     aTTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGa                                                        >  2:166599/1‑151 (MQ=255)                                                                                      tttAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactgcgcctggg                                                       >  1:101994‑M2/1‑112 (MQ=255)                                                                                         aaCGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagcag                                                    <  2:656579/151‑1 (MQ=255)                                                                                             acgaTGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACg                                                >  2:147013/1‑151 (MQ=255)                                                                                              cgaTGGATCCGCTCGATGCCCAGGCGCAGTACAGCGACCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagc                                               >  1:532665‑M2/1‑104 (MQ=255)                                                                                                        gCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcaacagtgacgtggcgcggccacggtcgaacaggtcgctgtactgcgcctgggcatcgagcggatccatcg                                     >  1:532665‑M1/1‑47 (MQ=255)                                                                                                         cTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTa                                     <  2:374993/150‑1 (MQ=255)                                                                                                               gCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGc                               >  2:82349/1‑150 (MQ=255)                                                                                                                cccAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcaacagtgacgtggcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagcggatccatcgtcgttaaa                             >  1:101994‑M1/1‑39 (MQ=255)                                                                                                                 ccAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcg                             >  2:522592/1‑150 (MQ=255)                                                                                                                      cgcAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAAt                        <  1:28069/150‑1 (MQ=255)                                                                                                                       gcAGTACAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcaacagtgacgtggcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagcggatccatcgtcgttaaatcgcgca                      >  2:635572‑M1/1‑32 (MQ=255)                                                                                                                        cAGTACAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcacctgcgacgtggcgctgccccggtcgaacagttcgctgtactgcgcccgggcatcgagcggacccatcgccgctaaaccgcgcag                     >  1:125586‑M1/1‑31 (MQ=255)                                                                                                                        cAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTg                      >  2:547886/1‑150 (MQ=255)                                                                                                                        cAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTg                      >  2:629055/1‑150 (MQ=255)                                                                                                                            aCAGCGAACTGTTCGACCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcaacagtgacgtggcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagcggatccatcgtcgttaaatcgcgcaggaaa                 >  2:145445‑M1/1‑27 (MQ=255)                                                                                                                            aCAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGa                 >  2:571758/1‑151 (MQ=255)                                                                                                                            aCAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGa                 >  1:356631/1‑151 (MQ=255)                                                                                                                                    cTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTg          >  1:123267/1‑150 (MQ=255)                                                                                                                                       ttCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGc      <  2:123265/151‑1 (MQ=255)                                                                                                                                           aCCGTGGCCGCGgtcgcgggattcgccgtgcacatgttcaaacagcaacagtgacgtggcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcgagcggatccatcgtcgttaaatcgcgcaggaaaatgcccagcgcatgg  >  2:451352‑M1/1‑12 (MQ=255)                                                                                                                                                      |                                                                                                                                            ATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGCTGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCATCTGCCGCTGTA  >  NC_000913/1285200‑1285488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.