| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,309,800 | Δ1 bp | 5.9% | coding (69/1032 nt) | yfiZ_2 ← | putative siderophore transport system permease protein YfiZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,309,800 | 0 | C | . | 5.9% | 1042.2 / 62.0 | 287 | coding (69/1032 nt) | yfiZ_2 | putative siderophore transport system permease protein YfiZ |
| Reads supporting (aligned to +/- strand): ref base C (143/127); new base . (9/8); total (152/135) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01 | |||||||||||
Only 100 of 294 total aligned reads displayed.
GTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTT > USA300TCH1516_ALE/2309710‑2309890 | gTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATAc > 1:1169564/1‑91 (MQ=255)gTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATAc < 1:4471539/91‑1 (MQ=255)gTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATAc > 1:4959238/1‑91 (MQ=255) tGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACg < 2:2317359/91‑1 (MQ=255) tGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACg > 1:5407105/1‑91 (MQ=255) gAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGt < 1:4540576/91‑1 (MQ=255) gATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATAAACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAgt < 2:1565338/91‑1 (MQ=21) tatCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAgtgt > 2:5506875/1‑91 (MQ=255) tCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttg < 1:1742133/91‑1 (MQ=255) tCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttg > 2:3785778/1‑91 (MQ=255) tCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttg < 2:4457222/91‑1 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑Ttgtg < 1:3504933/91‑1 (MQ=25) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑Ttgtg < 2:4564216/91‑1 (MQ=25) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg > 1:2113409/1‑91 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg < 1:4654348/91‑1 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg > 1:3043542/1‑91 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg > 2:495725/1‑91 (MQ=255) cTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGc < 2:33122/91‑1 (MQ=255) cTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGct < 1:5298333/91‑2 (MQ=17) tAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑g < 1:2030781/91‑1 (MQ=255) aaaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gt > 2:2494540/1‑91 (MQ=255) aaaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGcttt < 2:2576281/91‑4 (MQ=12) aattaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtct < 2:593095/91‑1 (MQ=255) aattaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtct < 1:4368534/91‑1 (MQ=255) ttaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtcttt < 2:1228664/91‑1 (MQ=255) aattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtcttttt > 1:3667384/1‑91 (MQ=255) cttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGCGTGTTGTTA‑Gtctttttt > 2:2138588/2‑90 (MQ=255) attTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAATGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtctttttc < 1:4251260/91‑1 (MQ=255) attTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtctttttc > 1:1070597/1‑91 (MQ=255) ttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtctttttct > 1:406840/1‑91 (MQ=255) tttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtctttttctt > 1:689134/1‑91 (MQ=255) ttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtctttttcttt > 1:819351/1‑91 (MQ=255) tCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtctttttctttt < 2:3175863/91‑1 (MQ=255) tCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtctttttctttt > 2:1986738/1‑91 (MQ=255) tCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑Gtctttttctttt < 1:1660563/91‑1 (MQ=255) cGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTa > 2:3902351/1‑91 (MQ=255) cGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTa > 1:4855573/1‑91 (MQ=255) gaagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTAt < 2:117239/91‑1 (MQ=255) gaagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTAt > 2:4763275/1‑91 (MQ=255) agaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGa < 2:4165483/91‑1 (MQ=255) aaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATc > 1:133396/1‑91 (MQ=255) aCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCt < 2:1674588/91‑1 (MQ=255) aCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCt < 1:3999171/91‑1 (MQ=255) aaTCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATg < 2:129927/91‑1 (MQ=255) aaTCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATg < 1:3118356/91‑1 (MQ=255) aTCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATgg > 1:2621373/1‑91 (MQ=255) aTCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATgg > 2:312263/1‑91 (MQ=255) cGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCa < 1:552879/91‑1 (MQ=255) atatTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGAtt > 2:806399/1‑91 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGTCAGATTGGCTACt > 2:4286004/1‑91 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt < 1:3267959/91‑1 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt > 2:1712996/1‑91 (MQ=255) atatatACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACtt > 1:3751041/1‑91 (MQ=255) tatataCAAATAAAAAGAAAGCACAA‑TCTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTa < 2:5134129/91‑1 (MQ=255) atataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAt < 2:20838/91‑1 (MQ=255) tataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAtt < 1:2960700/91‑1 (MQ=255) ataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAttt > 2:1375752/1‑91 (MQ=255) taCAAATAAAACGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGCCTACTTAtttt > 2:5620159/1‑90 (MQ=255) aCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCt < 2:5217145/91‑1 (MQ=255) cAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtt > 1:3607070/1‑91 (MQ=255) cAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtt > 2:4675447/1‑91 (MQ=255) aaTAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtttt < 2:610230/91‑1 (MQ=255) aaTAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCtttt < 1:1535411/91‑1 (MQ=255) tAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTtat < 2:1865492/91‑1 (MQ=255) tAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTtat < 2:3410425/91‑1 (MQ=255) aaagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGc > 1:3307390/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc > 1:2251989/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc > 1:108254/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc < 2:2892950/91‑1 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc < 2:217649/91‑1 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc < 2:1481140/91‑1 (MQ=255) gaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAt > 2:2627382/1‑91 (MQ=255) gaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAt > 1:3192866/1‑91 (MQ=255) gaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAt > 2:4221106/1‑91 (MQ=255) aaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAtt < 1:3408039/91‑1 (MQ=255) aaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAtt > 2:4072550/1‑91 (MQ=255) aaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAtt < 1:2877907/91‑1 (MQ=255) aagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAttt > 2:4018884/1‑91 (MQ=255) cgCACAACACTCACGTATATA‑GTGAGT‑TTGTGCTTTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAttt > 1:1981090/2‑91 (MQ=17) agCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTa > 2:1924926/1‑91 (MQ=255) agCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTa > 2:3498575/1‑91 (MQ=255) gCACAACACTCACGTATATA‑GTGAGT‑TTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTAc > 1:3065506/1‑91 (MQ=25) cacaA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACt < 1:2529466/91‑1 (MQ=255) acaA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACtt > 1:2384523/1‑91 (MQ=255) caA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTc > 1:5137472/1‑91 (MQ=255) acaCTCACGTATATA‑GTGAGT‑TTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCa > 2:2359091/3‑91 (MQ=37) caCTCACGTATATA‑GTGAGT‑TTGTGC‑GTCTTTTTCTTTTATTATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAc > 2:4843801/2‑91 (MQ=37) aCTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAc < 1:4970698/91‑1 (MQ=255) cTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAcc > 2:2980235/1‑91 (MQ=255) tCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCt < 2:3751373/91‑1 (MQ=255) cAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCtt < 1:1286204/91‑1 (MQ=255) cAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCtt < 1:4754586/91‑1 (MQ=255) c‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 1:5081254/1‑91 (MQ=255) c‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 2:5300295/1‑91 (MQ=255) c‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 2:2727967/1‑91 (MQ=255) c‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 1:965765/1‑91 (MQ=255) ataCGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACtatt > 2:4997054/1‑91 (MQ=255) taCGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTg < 1:57374/91‑1 (MQ=255) taCGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTg < 2:3427093/91‑1 (MQ=255) aCGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGt < 1:880140/91‑1 (MQ=255) | GTGAATGATATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGC‑GTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTT > USA300TCH1516_ALE/2309710‑2309890 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |