BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 515946	NA (NA)	7 (0.030)	6/146	NT	NA	intergenic (+4014/‑2749)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	?	USA300TCH1516_ALE	= 515981	NA (NA)	7 (0.030)	6/146	NT	NA	intergenic (+4049/‑2714)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

Only 100 of 240 total aligned reads displayed.

ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/515850‑515946

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctaagCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATATG  <  USA300TCH1516_ALE/515981‑515892

ACTAGTCGGGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGT                                                                                                  <  1:1685896/91‑1

ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGT                                                                                                  <  2:873448/91‑1

ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGT                                                                                                  >  1:739499/1‑91

ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGT                                                                                                  <  2:2436173/91‑1

ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGT                                                                                                  <  2:3032088/91‑1

ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGT                                                                                                  >  2:3104155/1‑91

ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGT                                                                                                  <  2:3382065/91‑1

 CTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTT                                                                                                 >  2:4411761/1‑91

 CTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTT                                                                                                 <  1:3496193/91‑1

 CTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTT                                                                                                 >  1:3232650/1‑91

 CTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTT                                                                                                 <  1:1089974/91‑1

  TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTC                                                                                                >  2:2363003/1‑91

  TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTC                                                                                                >  2:1804290/1‑91

  TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTC                                                                                                >  2:1420415/1‑91

  TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTC                                                                                                <  1:3068317/91‑1

  TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTC                                                                                                <  2:4839909/91‑1

  TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTC                                                                                                <  1:3261206/91‑1

  TAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTC                                                                                                <  1:369707/91‑1

   AGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT                                                                                               <  2:2923544/91‑1

   AGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT                                                                                               <  2:5225948/91‑1

   AGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT                                                                                               >  2:1767893/1‑91

   AGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT                                                                                               <  1:1061205/91‑1

   AGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT                                                                                               >  1:5038158/1‑91

   AGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT                                                                                               >  1:375944/1‑91

   AGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT                                                                                               <  2:354743/91‑1

   AGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCT                                                                                               <  1:366736/91‑1

    GTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTA                                                                                              >  2:2694251/1‑91

    GTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTA                                                                                              <  1:4755988/91‑1

     TCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAA                                                                                             >  1:582057/1‑91

     TCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAA                                                                                             >  1:660788/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  2:4221236/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  2:4124224/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  2:5545788/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  2:3806292/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  1:2976475/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  1:2454002/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  2:2165140/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  1:1659879/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  2:2507585/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  2:262883/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  1:1911860/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  2:2947595/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  2:5600871/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  2:761881/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  1:4522721/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  2:474519/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  2:4610183/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  1:536073/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  1:1478305/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  1:117222/91‑1

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  2:4225131/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            >  1:5443261/1‑91

      CGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  1:5468930/91‑1

      CGAGTGACACGGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG                                                                                            <  2:2153910/91‑1

                                         ACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCC                                                         <  1:3025645/91‑1

                                          CATATTACCAAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCC                                                        <  2:61094/91‑1

                                                                                          TTCTAAGCGCTCCACCTGTCCTTACGATCATGCTTCAACGCCATTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        <  2:3532400/91‑1

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        >  2:3023376/1‑91

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        <  1:1957509/91‑1

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        >  2:5005369/1‑91

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        <  1:4213220/91‑1

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        <  1:4937969/91‑1

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        <  2:1978975/91‑1

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        <  2:1644491/91‑1

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        <  2:1353994/91‑1

                                                                                          TTCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGT        <  1:872409/91‑1

                                                                                           TCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCGCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCTACAGCTTCGGTA       >  2:3603705/1‑91

                                                                                           TCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTA       >  1:4818826/1‑91

                                                                                           TCTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTA       >  1:5178970/1‑91

                                                                                            CTAAGCGCTCCAGATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAA      <  2:3730500/91‑1

                                                                                            CTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGGACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAA      <  2:5458987/91‑1

                                                                                            CTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAA      >  2:5191345/1‑91

                                                                                            CTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAA      <  1:132020/91‑1

                                                                                            CTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAA      <  2:3675791/91‑1

                                                                                            CTAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAA      <  1:2127735/91‑1

                                                                                             TAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAAT     <  2:4559072/91‑1

                                                                                             TAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAAT     >  2:4272538/1‑91

                                                                                             TAAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAAT     <  1:910241/91‑1

                                                                                              AAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATA    >  1:4049605/1‑91

                                                                                              AAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATA    >  1:3147372/1‑91

                                                                                              AAGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATA    <  1:2306389/91‑1

                                                                                               AGCGCTCCACTTGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   <  1:5618137/91‑1

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  1:3370723/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  2:5335720/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  2:103928/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  2:1168384/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  2:2039749/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   <  1:2261782/91‑1

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  2:2802597/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  1:2190919/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  2:3288485/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCCGTAATAT   >  1:4479515/1‑91

                                                                                               AGCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCCCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATAT   >  1:5481591/1‑91

                                                                                                GCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTGCCATTGTCCAAAGGACAATCCACAGCTTCGATAATATG  <  1:5430333/91‑1

                                                                                                GCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATATG  >  1:1043518/1‑91

                                                                                                GCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATATG  >  2:3984997/1‑91

                                                                                                GCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATATG  >  2:3234891/1‑91

                                                                                                GCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATATG  <  1:2609448/91‑1

                                                                                                GCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATATG  <  1:4002130/91‑1

                                                                                                GCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATATG  <  1:3455727/91‑1

ACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAATGGTAGGAGAGCGTTCTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/515850‑515946

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctaagCGCTCCACATGTCCTTACGATCATGCTTCAACGCCCTTAGAACGCTCTCCTACCATTGTCCAAAGGACAATCCACAGCTTCGGTAATATG  <  USA300TCH1516_ALE/515981‑515892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.