| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 516988 = | NA (NA) | 32 (0.120) | 16/146 | NT | NA | intergenic (+5056/‑1707) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 517013 = | NA (NA) | intergenic (+5081/‑1682) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
Only 100 of 250 total aligned reads displayed.
TCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/517084‑516988‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaggcgCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG > USA300TCH1516_ALE/517013‑517102 TCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAG < 1:2329981/91‑1TCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAG > 2:315365/1‑91 CTCGCAGTCACGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGG < 2:3182414/91‑1 CTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGG < 1:3877459/91‑1 CTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGG > 1:1448/1‑91 CTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGG > 2:2849207/1‑91 TCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGA < 1:3634559/91‑1 TCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGA > 1:3686295/1‑91 TCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGA > 1:4224003/1‑91 TCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGA > 2:219601/1‑91 TCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGA < 1:2533820/91‑1 TCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGA > 2:2438036/1‑91 TCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGA < 2:4918812/91‑1 TCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGA > 2:552413/1‑91 CGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAG < 1:2294920/91‑1 CGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAG < 1:992054/91‑1 GCAGTCAGGCTCCCTTATGCCTTGACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGCGCGCCTCCGTTACCTTTTAGGAGG < 2:395460/91‑1 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG < 2:2318517/91‑1 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG < 1:2438036/91‑1 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG < 1:1315716/91‑1 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG < 1:2742398/91‑1 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG > 2:162692/1‑91 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG < 1:3528190/91‑1 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG > 1:726896/1‑91 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG < 1:321320/91‑1 GCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGG < 1:1162495/91‑1 CAGTCAAGTTCCCTTATGCTTTTACACTCTATGAATGATTTCCAACCATAATGAGGGAACCTTAGCGCGCCTCCGTTAAGTTTTAGGAGtc > 2:5630975/1‑89 CAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGC > 1:1052950/1‑91 CAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGC > 1:4961115/1‑91 CAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGC > 2:1137704/1‑91 CAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGC > 2:5080573/1‑91 CAGTCAAGCTCCCTTATGCCTTTACACGCTATGAATGATTTCCAACCATTCTGAGGGAACATTTGAACCCCTCCGTTACCTTTTAGGAGGC > 1:315999/1‑91 AGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG < 1:3475353/91‑1 AGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG < 2:348333/91‑1 AGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG < 1:1681934/91‑1 AGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG < 2:3991578/91‑1 AGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG < 2:1585693/91‑1 AGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG < 2:2024698/91‑1 AGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG < 2:1682045/91‑1 TCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCCTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGG > 1:4593618/1‑91 CTTTGAGCGCCTCCGTTACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAG > 2:2825335/1‑91 GCGCCTCCGTTACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGAC > 2:4156520/1‑91 GCCTCCGTTACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTG > 1:5447184/1‑91 CCTCCGTTACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTACCGGCATAAGGGAGCTTGACTGC > 2:648462/1‑91 CGTTACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGA > 1:1039407/1‑91 GTTACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGAC > 1:300199/1‑91 GTTACC‑TTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACC > 2:1530191/1‑91 TTACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACC > 2:1816324/1‑91 TACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCT > 1:1913636/1‑91 ACCTTTTAGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTA > 2:342760/1‑91 GGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTTCGAGACCTACAAGTCGA > 2:2417926/1‑91 GGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGA > 2:370729/1‑91 GGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGA > 1:1769822/1‑91 GGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGA < 1:1508059/91‑1 GGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGGAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGA < 1:4694102/91‑1 GAGGCGCTCAGAGGTTCCCTCAGAATGGTTGGAGATCATTCATAGAGTGTAAAGGCATACGGGAGCTTGACTGCGAGACCTACAAGTCGAG < 1:5159846/91‑1 GAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAG > 1:2599450/1‑91 GAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAG < 2:1485757/91‑1 GAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAG > 2:5332526/1‑91 GAGGCGCTCAAAGGGCCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAG < 1:1205934/91‑1 AGGCGCTCAATGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGC < 2:4494489/91‑1 AGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGATTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGC > 2:5444245/1‑91 AGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACACGTCGAGC > 2:87477/1‑91 AGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGC > 2:4891512/1‑91 AGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGC < 2:1163548/91‑1 AGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGC > 2:4021970/1‑91 AGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGC < 1:4944566/91‑1 AGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGC > 1:5202841/1‑91 ggtGCTTAAAGGTTCCCTAAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGCGCTTGACTGCGAGACCTACAAGTCGAGCA < 1:4728869/88‑1 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA < 2:1962908/91‑1 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA > 1:4258015/1‑91 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA < 2:4904495/91‑1 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA < 1:4451968/91‑1 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA > 2:4297642/1‑91 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA > 2:4257048/1‑91 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA > 1:1932510/1‑91 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA > 1:202225/1‑91 GGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCA < 1:2807543/91‑1 GCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAG > 1:3333057/1‑91 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG > 1:5388935/1‑91 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG > 1:3401287/1‑91 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG > 1:78710/1‑91 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG > 2:1855021/1‑91 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG < 1:2969807/91‑1 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG > 1:1279946/1‑91 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG > 1:2157368/1‑91 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG > 2:4762763/1‑91 CGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGG < 2:1367127/91‑1 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACTAGTCGAGCAGGG > 2:3619247/1‑91 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACACGTCGAGCAGGG < 2:5239472/91‑1 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG < 2:4774327/91‑1 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG < 1:4382749/91‑1 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG > 2:4446681/1‑91 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG > 2:1024590/1‑91 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG > 1:4747982/1‑91 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG < 1:4163815/91‑1 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG < 1:4114301/91‑1 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG < 1:3973470/91‑1 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG > 2:827997/1‑91 GCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG < 1:3097105/91‑1 TCTCGCAGTCAAGCTCCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGGAACCTTTGAGCGCCTCCGTTACCTTTTAGGAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/517084‑516988‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaggcgCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGG > USA300TCH1516_ALE/517013‑517102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |