| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,987,374 | A→C | 6.7% | intergenic (‑437/+340) | USA300HOU_RS09895 ← / ← USA300HOU_RS09905 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,987,374 | 0 | A | C | 6.7% | 993.7 / 6.2 | 295 | intergenic (‑437/+340) | USA300HOU_RS09895/USA300HOU_RS09905 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (125/143); new base C (22/5); total (147/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.09e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 308 total aligned reads displayed.
ACAGACATTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCTTAAA > USA300TCH1516_ALE/1987284‑1987463 | aCAGACATTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCaaa > 2:1921276/1‑91 (MQ=255)aCAGACATTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCaaa > 1:4548457/1‑91 (MQ=255) cAGACATTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCaaaa > 1:4155677/1‑91 (MQ=255) aGACATTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAACAt > 2:1725006/1‑91 (MQ=255) aGACATTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAAt < 1:4821212/91‑1 (MQ=255) aTTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTg < 1:517870/91‑1 (MQ=255) aTTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTg < 1:2122340/91‑1 (MQ=255) ttGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTga < 2:1049133/91‑1 (MQ=255) tGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTgag < 2:2699148/91‑1 (MQ=255) gCAAATTGGGGAAACGGGCCACAAAGTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTgaga < 2:5221844/91‑1 (MQ=255) gCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAgagaaa > 2:2582600/1‑89 (MQ=255) gCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTgaga > 1:4080860/1‑91 (MQ=255) aaaTTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGGGGCCCCAAAATAGAGAAATc > 2:4306438/1‑91 (MQ=255) aaaTTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGAGAAATc > 2:2255829/1‑91 (MQ=255) aaTTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCg < 1:4529309/91‑1 (MQ=255) aaTTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCg < 1:1327445/91‑1 (MQ=255) aTTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCgg > 1:5412557/1‑91 (MQ=255) aTTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGAAAAATCgg > 2:5572640/1‑91 (MQ=255) tGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGat < 1:2314857/91‑1 (MQ=255) ggggAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatt > 1:2397615/1‑91 (MQ=255) ggggAAACGCGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatt < 2:5353059/91‑1 (MQ=255) gggAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGattt < 1:3628924/91‑1 (MQ=255) gggAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGattt > 1:761103/1‑91 (MQ=255) ggAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatttc > 1:1712887/1‑91 (MQ=255) ggAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatttc < 2:1960083/91‑1 (MQ=255) aaaCGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAACATAGTGAGATCGGatctcta > 2:235420/1‑91 (MQ=255) aaaCGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatttcta < 1:1392992/91‑1 (MQ=255) aaCGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatgtctaa > 1:3895726/1‑91 (MQ=255) aCGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatttctaat < 2:569310/91‑1 (MQ=255) aCGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatttctaat < 2:3182213/91‑1 (MQ=255) cGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGAGAGATCGGatctctaatt > 2:2641783/1‑91 (MQ=255) gCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGatttctaatttct < 2:3315398/91‑1 (MQ=255) cacaAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAACATAGAGAGATCGGATCTCTAATTTCTAc > 2:3224237/1‑91 (MQ=255) acaAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACa > 1:3080066/1‑91 (MQ=255) aaCTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGAc < 2:1067841/91‑1 (MQ=255) aCTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACa > 1:570471/1‑91 (MQ=255) cTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACAt < 2:2727839/91‑1 (MQ=255) cTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACAt < 2:3072649/91‑1 (MQ=255) cTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACAt < 1:3985371/91‑1 (MQ=255) tCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACAtt < 1:3868131/91‑1 (MQ=255) tCAGAAACTGGTGGAAAGTCAGCTGAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACAtt < 1:5350966/91‑1 (MQ=255) cAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTg > 1:4271257/1‑91 (MQ=255) cAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTg < 2:738317/91‑1 (MQ=255) cAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTAGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTg > 1:5582089/1‑91 (MQ=255) aGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAACATAGAGAGATCGGATTTCTAATTTCTACAGACATTgt > 2:399123/1‑90 (MQ=255) aGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGc > 1:2831474/1‑91 (MQ=255) gAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCa < 1:1877526/91‑1 (MQ=255) gAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCa < 2:1034217/91‑1 (MQ=255) gAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGAGAGATCGGATTTCTAATTTCTACAGACATTGCa > 2:1617465/1‑91 (MQ=255) aaaCTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCaa > 1:1018131/1‑91 (MQ=255) aaCTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCaaa > 1:379267/1‑91 (MQ=255) aaCTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCaaa < 1:2536815/91‑1 (MQ=255) ggtggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAACATAGAGAGATCGGATCTCTAATTTCTACAGACAATGTAAATTAg > 2:3691733/1‑91 (MQ=17) ggtggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAg < 1:459576/91‑1 (MQ=255) ggtggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAg < 1:1200677/91‑1 (MQ=255) ggtggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAg > 1:3579621/1‑91 (MQ=255) ggtggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATCTCTAATTTCTACAGACATTGCAAATTAg > 2:2999206/1‑91 (MQ=255) gtggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAgg < 1:826305/91‑1 (MQ=255) gaggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAACTAGAGAGACCGGATTTCTAATTTCTACAGACATTGTAAGTTCgg > 2:4716796/3‑91 (MQ=21) tggGAAGTCAGGTTAAAATAACATGCAAGTTGGTGAGGCTCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAggg < 2:348036/91‑1 (MQ=25) tggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAACATAGAGAAATCGGATCTCTAATTTCTACAGACAATGAAAATTAggg > 2:4079321/1‑91 (MQ=17) tggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAggg > 1:4244796/1‑91 (MQ=255) ggAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGa > 1:510406/1‑91 (MQ=255) ggAAAGGCAGCATAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGa < 2:3785240/91‑1 (MQ=255) gAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGaa < 2:1267055/91‑1 (MQ=255) tCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACggg < 1:3951079/91‑1 (MQ=255) cAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGc > 1:1652612/1‑91 (MQ=255) cAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGc > 1:368803/1‑91 (MQ=255) aGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGcc < 1:3506870/91‑1 (MQ=255) gCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGCAACGGGCca > 2:598497/1‑91 (MQ=255) gCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCca < 1:1366588/91‑1 (MQ=255) cTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCcac > 2:612032/1‑91 (MQ=255) tttaaaTAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCcaca < 2:3841978/88‑1 (MQ=255) ttAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCcaca < 1:4960833/91‑1 (MQ=255) aaTAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACt < 2:2834467/91‑1 (MQ=255) tAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCa < 2:352453/91‑1 (MQ=255) tAACATGCAAGGTGGCGAGGCCCAAAAATAGTGAGAGCGGATTTCAGATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACGCa < 2:5467353/91‑1 (MQ=21) aCATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGa < 1:5454234/91‑1 (MQ=255) cATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGaa > 1:3136600/1‑91 (MQ=255) cATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGACCACAAACTCAGaa > 1:4683647/1‑91 (MQ=255) aTGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAg > 1:3824959/1‑91 (MQ=255) tGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGt < 1:2682278/91‑1 (MQ=255) cAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTtg > 1:1123217/1‑91 (MQ=255) aGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTtggt > 1:1954858/1‑91 (MQ=255) aGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTtggt > 1:4308627/1‑91 (MQ=255) gTTGGCGAGGCCACAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTtggtg < 1:2255039/91‑1 (MQ=255) ttGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTtggtgg < 1:3454019/91‑1 (MQ=255) gCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGaaa < 1:1921276/91‑1 (MQ=255) cGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAg > 2:1508220/1‑91 (MQ=255) cGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACAATGCAAAATAGGGAAACGAACCACAAACTCAGAAGTTGGTGGAAAg > 2:5099703/1‑91 (MQ=38) ggagCCCCAAAATAGTGAAATTGGATTTCAAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGt < 2:851125/88‑1 (MQ=14) ccccAAAATAGTGGGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGc < 2:4472459/91‑1 (MQ=255) ccccAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGc < 1:3239364/91‑1 (MQ=255) cccAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCt < 1:853956/91‑1 (MQ=255) cccAAAATAGTGAGATCGGATTTCCAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCt < 2:5251538/91‑1 (MQ=255) cccAAAATAGTGAAATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCt < 2:1412560/91‑1 (MQ=255) ccAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCtt < 1:4402803/91‑1 (MQ=255) cAACATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCTTa < 2:1365138/91‑1 (MQ=255) cAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCTTa > 2:4131714/1‑91 (MQ=255) aaaaTAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCTTaa > 1:3362587/1‑91 (MQ=255) | ACAGACATTGCAAATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGCAAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAATTAGGGAAACGGGCCACAAACTCAGAAGTTGGTGGAAAGTCAGCTTAAA > USA300TCH1516_ALE/1987284‑1987463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |