New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2057387137 (0.750)7 (0.040) 4/232 NT 5.2% intergenic (+144/+148) USA300HOU_RS10370/USA300HOU_RS10375 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE = 2057403 132 (0.790)intergenic (+160/+132) USA300HOU_RS10370/USA300HOU_RS10375 hypothetical protein/hypothetical protein

Only 100 of 179 total aligned reads displayed.

TATCTAGATATGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTG  >  USA300TCH1516_ALE/2057247‑2057527
                                                                                                                                             |                                                                                                                                            
tATCTAGATATGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCA                                                                                                                                              <  1:1045978‑M1/141‑1 (MQ=255)
tATCTAGATATGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCA                                                                                                                                              >  1:816363‑M1/1‑141 (MQ=255)
 aTCTAGATATGATTAAGTAAACTATTAATCTTATTAAAGCTCTCTATTAAG‑AAAAAATTTCATGCTATAAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCat                                                                                                                                             <  4:218594/141‑1 (MQ=255)
  tCTAGATATGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCata                                                                                                                                            >  1:96602/1‑141 (MQ=255)
   cTAGATATGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCatat                                                                                                                                           <  2:1184320/141‑1 (MQ=255)
    tAGATATGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATg                                                                                                                                          <  4:273771/141‑1 (MQ=255)
    tAGATATGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATg                                                                                                                                          <  1:1451469/141‑1 (MQ=255)
       atatGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTATTATAAAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCtt                                                                                                                                       <  4:400456/141‑1 (MQ=255)
         atGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTta                                                                                                                                     >  3:96787/1‑141 (MQ=255)
         atGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTta                                                                                                                                     >  4:302458/1‑141 (MQ=255)
          tGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTtat                                                                                                                                    >  3:199114/1‑141 (MQ=255)
             ttAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTtatata                                                                                                                                 >  2:4418/1‑141 (MQ=255)
               aaGTAAACTATTAATCTTATTAAAGGGCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGc                                                                                                                               <  1:1318248/141‑1 (MQ=255)
                aGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAGTATTAAGAACCCCCAGCATATGCTTTATATAGCt                                                                                                                              <  2:44579/141‑1 (MQ=255)
                aGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCAagctatataaagcata                                                                                                                              <  3:85971‑M1/141‑17 (MQ=255)
                aGTAAACTAGTAATCTTATAAAAAGTCTCTAAGAAG‑AAAAAATGTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATAGAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCAagctatataaagcata                                                                                                                              <  4:576190‑M1/141‑17 (MQ=255)
                aGTAAACGAGTAATCTTATTAAAGGACTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCt                                                                                                                              <  3:389574/141‑1 (MQ=255)
                 gTAAACTATTAATCTTATTAAAGGTCTCTAGGAAGAAAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCAagctatataaagcata                                                                                                                              <  2:1294669‑M1/141‑17 (MQ=255)
                  tAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTtg                                                                                                                            >  4:191536‑M2/1‑139 (MQ=255)
                    aaCTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTtgct                                                                                                                          <  4:520106‑M2/141‑5 (MQ=255)
                     aCTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTtgctg                                                                                                                         <  1:747518‑M2/141‑6 (MQ=255)
                        aTTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTtgctgggg                                                                                                                      >  3:501721‑M2/1‑133 (MQ=255)
                            aTCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGttt                                                                                                                  <  2:1031250/141‑1 (MQ=255)
                            aTCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGttt                                                                                                                  <  2:1509096/141‑1 (MQ=255)
                             tCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTtc                                                                                                                 >  1:1127812/1‑141 (MQ=255)
                              cTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTtct                                                                                                                <  1:728027/141‑1 (MQ=255)
                                 attaAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCAt                                                                                                             >  2:1290630/1‑141 (MQ=255)
                                  ttaAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATa                                                                                                            >  2:213916/1‑141 (MQ=255)
                                  ttaAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATa                                                                                                            >  1:1430634/1‑141 (MQ=255)
                                   taAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATAc                                                                                                           <  2:38371/141‑1 (MQ=255)
                                     aaGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTTTTTTAGAAAAAGCGACAAGAGAGATAATCTTAGAATAATTGGTAAAATATTAAGAACCCCCGGCATATGCTTTATATAGCTGGCTGGGGGTTTCTCATACaa                                                                                                         >  3:530596/1‑141 (MQ=255)
                                      aGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAat                                                                                                        >  1:471326/1‑141 (MQ=255)
                                       ggTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAata                                                                                                       <  2:866550/141‑1 (MQ=255)
                                       ggTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATACAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAata                                                                                                       >  1:1384249/1‑141 (MQ=255)
                                        gTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAatat                                                                                                      >  2:889468/1‑141 (MQ=255)
                                        gTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAAGCGAACAATAATGTGTAAAATATTAAGGACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTGCTCATACAatat                                                                                                      >  1:1242456/1‑141 (MQ=255)
                                          ctctAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATgg                                                                                                    >  2:1449908/1‑141 (MQ=255)
                                           tctAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGa                                                                                                   >  1:1169098/1‑141 (MQ=255)
                                            ctAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCCCATACAATATGGAt                                                                                                  >  2:1603268/1‑141 (MQ=255)
                                             gaGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATc                                                                                                 <  2:475911/140‑1 (MQ=255)
                                              aGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCg                                                                                                >  1:187282/1‑141 (MQ=255)
                                                 aag‑aaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGc                                                                                             <  4:201262/141‑1 (MQ=255)
                                                 aag‑aaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGc                                                                                             >  2:355744/1‑141 (MQ=255)
                                                  ag‑aaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCa                                                                                            >  2:929218/1‑141 (MQ=255)
                                                  ag‑aaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCa                                                                                            <  4:708926/141‑1 (MQ=255)
                                                  ag‑aaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCa                                                                                            >  2:105912/1‑141 (MQ=255)
                                                   g‑aaAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCAt                                                                                           <  1:1636994/141‑1 (MQ=255)
                                                         aaTTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGc                                                                                      <  1:40849/141‑1 (MQ=255)
                                                             tCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGt                                                                                  >  3:331227/1‑141 (MQ=255)
                                                               aTGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGtat                                                                                >  1:1375489/1‑141 (MQ=255)
                                                                 gCGATGGGATTGTTTGAGAAAAAGCGACGATATATATAATCTAACCATAATTTGTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaa                                                                              <  2:1553010/141‑1 (MQ=255)
                                                                 gCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaa                                                                              <  2:1336801/141‑1 (MQ=255)
                                                                 gCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATaa                                                                              <  3:626764/141‑1 (MQ=255)
                                                                  cGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTGATATAGCTTGCTGGGGGATTATCATACAATATGGATCGAGCATCTTGCATGTATaaa                                                                             >  2:648588/1‑141 (MQ=255)
                                                                     tGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACaa                                                                          <  1:1426485/141‑1 (MQ=255)
                                                                       ggaTTGTTTTAGAAAAAGCGACGATATATATAATCTAACGATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCGTCTTGCATGTATAAACAAAt                                                                        <  2:1424659/140‑1 (MQ=255)
                                                                       agaTTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGtat                                                                                >  2:1142787/1‑133 (MQ=255)
                                                                        gaTTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATa                                                                       >  2:234877/1‑141 (MQ=255)
                                                                          ttGTTTTAGAAAAGGCGACGCGATATATTATCTAACAGTAATTGTTAAAATATTCAGAACGCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTGCTCATACCATATGGATCGAGCATCTTGCATGTATAAACAAATAgg                                                                     <  2:1231788/141‑1 (MQ=255)
                                                                          ttGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAgg                                                                     <  1:883472/141‑1 (MQ=255)
                                                                          ttGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAga                                                                     <  3:27420/141‑2 (MQ=255)
                                                                           tGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGc                                                                    <  3:130631/141‑1 (MQ=255)
                                                                                    aaaaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAg                                                           >  1:363185/1‑141 (MQ=255)
                                                                                     aaaGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGt                                                          <  1:469813/141‑1 (MQ=255)
                                                                                       aGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTaa                                                        >  4:132386/1‑141 (MQ=255)
                                                                                        gCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCAtatgctttatatagcttgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatct                                                       >  3:367651‑M1/1‑54 (MQ=255)
                                                                                            cgaTATATATCATCTAACAAAAATTATTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGATTCTCATACAATATGGATCGAGCATATTGCATGTATCAAAAAATAGGCTATCAAAAGTaaacaaa                                                   >  2:756803/1‑137 (MQ=255)
                                                                                            cgaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTa                                                   >  3:469356/1‑141 (MQ=255)
                                                                                            cgaTATATATAATCTAACAATAACTTTTAAAATATTAAGAACCCCCAGCATATGCTCTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATACGCTATTCAAAGTAAAATTa                                                   >  2:1013742/1‑141 (MQ=255)
                                                                                             gaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAc                                                  <  3:211018/141‑1 (MQ=255)
                                                                                             gaTATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAc                                                  <  1:343170/141‑1 (MQ=255)
                                                                                                atatataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCa                                               <  2:1127812/141‑1 (MQ=255)
                                                                                                   tataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAc                                            >  2:929578/1‑141 (MQ=255)
                                                                                                   tataATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAAc                                            >  3:593668/1‑141 (MQ=255)
                                                                                                        tCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCaaa                                             <  1:44554/135‑1 (MQ=255)
                                                                                                          tAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAAt                                     <  1:1234858/141‑1 (MQ=255)
                                                                                                             cAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGc                                  >  1:319808/1‑141 (MQ=255)
                                                                                                                taatTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCtt                               >  2:962912/1‑141 (MQ=255)
                                                                                                                 aatTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCttt                              >  3:258922/1‑141 (MQ=255)
                                                                                                                   tttttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTcc                            >  1:549205/1‑141 (MQ=255)
                                                                                                                   tttttAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTcc                            <  3:523177/141‑1 (MQ=255)
                                                                                                                       tAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCtt                        >  2:674659/1‑141 (MQ=255)
                                                                                                                          aaTATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa                     <  2:618665/141‑1 (MQ=255)
                                                                                                                            tatTAAGAACCCCCAGCAtatgctttatatagcttgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctt                      <  2:955453‑M1/138‑121 (MQ=255)
                                                                                                                            tatTAAGAACCCCCAGCAtatgctttatatagcttgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctt                      >  1:955453‑M1/1‑18 (MQ=255)
                                                                                                                            tatTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAAt                   <  1:641130/141‑1 (MQ=255)
                                                                                                                            tatCAAGACACCCAAGAATATGCTTTCTCTACACTGCTGGCGGTTTATCATACCATATGGATCGAGCATCTTGCATGTAAAAACACATAGGCTATTCAACGTAAAATTACCCAAACATTGAATAGCCTCTCCTCCACAAAt                   <  4:530596/141‑1 (MQ=255)
                                                                                                                             atTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATa                  <  3:302458/141‑1 (MQ=255)
                                                                                                                             atTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATa                  >  1:1179247/1‑141 (MQ=255)
                                                                                                                              ttAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAg                 >  1:1585806/1‑141 (MQ=255)
                                                                                                                                    aCCCCCAGCAagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagatta           >  1:967656‑M1/1‑10 (MQ=255)
                                                                                                                                     cccccAGCAagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaa          >  1:273317‑M1/1‑9 (MQ=255)
                                                                                                                                        ccAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttattta       >  4:179147/1‑141 (MQ=255)
                                                                                                                                         cAGCAagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaatagt      <  1:747518‑M1/141‑137 (MQ=255)
                                                                                                                                         cAGCAagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaatagt      <  1:215540‑M1/141‑137 (MQ=255)
                                                                                                                                          aGCAagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaatagtt     >  2:618183‑M1/1‑4 (MQ=255)
                                                                                                                                          aGCAagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaatagtt     <  4:520106‑M1/141‑138 (MQ=255)
                                                                                                                                           gCAagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaatagttt    >  2:1518586‑M1/1‑3 (MQ=255)
                                                                                                                                           gCAagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaatagttt    >  2:1517799‑M1/1‑3 (MQ=255)
                                                                                                                                             aagctatataaagcatatgctgggggttcttaatattttaaaaattattgttagattatatatatcgtcgctttttctaaaacaatctcatcgcatgaaattttttcttcctagagacctttaataagattaatagtttac  <  1:1312990‑M1/141‑141 (MQ=255)
                                                                                                                                             |                                                                                                                                            
TATCTAGATATGATTAAGTAAACTATTAATCTTATTAAAGGTCTCTAGGAAG‑AAAAAATTTCATGCGATGAGATTGTTTTAGAAAAAGCGACGATATATATAATCTAACAATAATTTTTAAAATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTG  >  USA300TCH1516_ALE/2057247‑2057527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.