| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2681949 = | 181 (0.990) | 5 (0.030) | 5/244 | NT | 2.8% | coding (873/1278 nt) | mvaA | 3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase |
| ? | USA300TCH1516_ALE | 2681984 = | 170 (0.970) | coding (838/1278 nt) | mvaA | 3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 216 total aligned reads displayed.
GAAGCTTTAGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAATACAGAAGCACGTTC > USA300TCH1516_ALE/2681809‑2682089 | cgagagaactggagaagaggttgccaaacgaatggaacgtgcttctgtattggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatac < 1:489249‑M1/1‑1 (MQ=255) aaGCTTTAGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcg < 4:226080/141‑1 (MQ=255) agagaactggagaagaggttgccaaacgaatggaacgtgcttctgtattggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgc < 4:560527‑M1/3‑1 (MQ=255) agagaactggagaagaggttgccaaacgaatggaacgtgcttctgtattggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgc < 1:1237750‑M1/3‑1 (MQ=255) aGCTTTAGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcgc < 2:1131251/141‑1 (MQ=255) gagaactggagaagaggttgccaaacgaatggaacgtgcttctgtattggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgcg < 1:841494‑M1/4‑1 (MQ=255) gagaactggagaagaggttgccaaacgaatggaacgtgcttctgtattggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgcg > 3:580977‑M1/138‑141 (MQ=255) gCTTGAGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcgcg > 4:307477/1‑141 (MQ=255) agaactggagaagaggttgccaaacgaatggaacgtgcttctgtattggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGt > 2:154985‑M1/137‑141 (MQ=255) tAGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCGTAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTatg < 1:940790/141‑1 (MQ=255) tAGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTatg < 1:1124949/141‑1 (MQ=255) tAGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTatg < 1:1078192/141‑1 (MQ=255) aGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCAATTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTatgc > 1:30786/1‑141 (MQ=255) gCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGTAATACCACGATACTGTCCGTCACGACTCGCGTatgca < 1:1194539/141‑1 (MQ=255) gCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTatgca > 3:221866/1‑141 (MQ=255) aaTTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCGCTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTatgcatg < 1:260566/141‑1 (MQ=255) aaTTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTatgcatg < 4:412150/141‑1 (MQ=255) ttGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATgcg > 3:388768/1‑141 (MQ=255) tGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATgcgc < 2:1386234/141‑1 (MQ=255) gTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCAc < 1:244634/141‑1 (MQ=255) gTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCAc < 4:638524/141‑1 (MQ=255) aTACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTATCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTg > 3:231733/1‑141 (MQ=255) ttgccaaacgaatggaacgtgcttctgtattggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGt < 1:1362975‑M1/5‑1 (MQ=255) cTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCtt < 3:349536/141‑1 (MQ=255) tttGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCt < 2:734655/141‑1 (MQ=255) tACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGcac > 1:1610018/1‑141 (MQ=255) accaccGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGcacc < 2:209563/141‑1 (MQ=255) accaccGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGcacc < 4:125717/141‑1 (MQ=255) accGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTTACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCAcg > 1:638898/1‑141 (MQ=255) accGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCAcg > 3:560527/1‑141 (MQ=255) accGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCAcg > 3:73884/1‑141 (MQ=255) accGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCAcg > 2:1302581/1‑141 (MQ=255) gaacgtgcttctgtattggcccaagtatatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTATGCATGCGCACTTGCTTCTGCACCAcgcg > 4:132236‑M1/107‑141 (MQ=255) cGCCAACGATTGACAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCCCGCCTCGCGTATGCATGCGCACTTGCTTCTGCACCAcgcg < 2:576478/141‑1 (MQ=255) ccAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGATGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTa < 1:1166607/141‑1 (MQ=255) aaCGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATc > 4:152366/1‑141 (MQ=255) aCGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCa < 2:1515981/141‑1 (MQ=255) cGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTatgcatg > 3:589962/1‑112 (MQ=255) cGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCGCGCGTATCAt < 2:1463296/141‑1 (MQ=255) gATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt > 3:445758/1‑141 (MQ=255) gATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt < 2:30786/141‑1 (MQ=255) gATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt < 1:35992/141‑1 (MQ=255) ttGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTc > 2:867042/1‑141 (MQ=255) gCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGAGGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCt < 2:1580847/141‑1 (MQ=255) cAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt < 1:1530136/141‑1 (MQ=255) tGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGc < 3:1234/141‑1 (MQ=255) tAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaaaa > 2:251273/1‑141 (MQ=255) tAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaaaa < 1:776512/141‑1 (MQ=255) tAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAACAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTgttttag < 1:525396/141‑7 (MQ=255) tAGGCACTTCAATTGTACCAATAAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCTCGCGTATCATTTCCTGTTGCTaaaa > 2:1659059/1‑141 (MQ=255) aGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaac < 1:679291/141‑1 (MQ=255) ggCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaaca < 4:497278/141‑1 (MQ=255) gCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaa < 1:46961/141‑1 (MQ=255) cACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaac < 1:392412/141‑1 (MQ=255) cTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAg < 2:1014354/141‑1 (MQ=255) cAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCAt < 3:26688/141‑1 (MQ=255) gTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATg > 4:264011/1‑141 (MQ=255) gTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATg > 2:789845/1‑141 (MQ=255) tACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGc < 1:1043924/141‑1 (MQ=255) aCCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGcc > 3:406499/1‑141 (MQ=255) aCCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGcc > 4:570853/1‑141 (MQ=255) caatcaatCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCAt < 1:774945/141‑1 (MQ=255) aatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATa < 1:1007799/141‑1 (MQ=255) atcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATaa > 3:111345/1‑141 (MQ=255) atcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATaa > 1:942459/1‑141 (MQ=255) gTTGACGATCTTGATCGTAACGCCATGTAGCAATACAACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac > 3:372627/1‑141 (MQ=255) tGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCt < 3:187373/141‑1 (MQ=255) aCGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCttt < 3:546808/141‑1 (MQ=255) gATCTTGATCGTAACGCCCTGTAGCAATACCACGATACTGTCCGTCACGACTCGAGTATGCATGCGCACTTGCTTCTGCCCCCCGCGTATCATTTCCTGTTGCTAAATCAACAGCACGTATGCCATTTATAAAACCTttat > 2:819500/1‑141 (MQ=255) tCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGCAGGTCATTCATAACACCTttatta > 2:68106/1‑141 (MQ=255) tGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTAtgt < 2:385284/141‑1 (MQ=255) aTCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATgtgt < 2:484875/141‑1 (MQ=255) aTCGTAACGCCAGGTAGCAATACCACGATACTGTCCGTCACGACGCGCGTATGCAGTCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGGATGCCATTCATAACAACTTTATTATgtgt > 4:699293/1‑141 (MQ=255) cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtg > 2:850632/1‑141 (MQ=255) cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtg < 4:406499/141‑1 (MQ=255) gTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCCGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgc < 2:247655/141‑1 (MQ=255) aaCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctg > 2:1256484/1‑141 (MQ=255) aaCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACAACTTTCTTATGTGAtgctg > 2:660282/1‑141 (MQ=255) aCGCCATGTAGCAATACCACGTTACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctgc < 1:9564/141‑1 (MQ=255) aCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctgc > 4:52634/1‑141 (MQ=255) aCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTcgctgc > 2:1252773/1‑141 (MQ=255) gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt > 2:18564/1‑79 (MQ=255) gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt < 1:18564/79‑1 (MQ=255) aTGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGAt < 1:461259/141‑1 (MQ=255) aGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAat > 2:701598/1‑141 (MQ=255) gCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCCCCACGCGTATCATTTCCGGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAata < 3:673504/141‑1 (MQ=255) gCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAata > 1:23468/1‑141 (MQ=255) cAATAGCACGCTACTGTCTGGTACGACTCGCGTATGCAAGCGCACTTGCTTCTGCACAACGCGTAACATTTACTGTTGCTCAAACGGCAGCATGCATGCGATTCATAACACCTTGATTCGGTGTACCTGCACGATGaggat > 4:107080/1‑137 (MQ=255) aCCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTAc > 1:1143378/1‑141 (MQ=255) ccACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAt < 4:340844/64‑1 (MQ=255) ccACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACt > 1:1287426/1‑141 (MQ=255) aTACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGc < 2:520974/141‑1 (MQ=255) tACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGcc < 2:964021/141‑1 (MQ=255) tGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAGACGACAGCTTTGATGTTAGCCTTAACAGTGTTGTTTTGTGTTGCTGCACGATGAAGATCTACTTGGGCCAAt > 3:65738/1‑141 (MQ=255) gTCCGTCACGACTCGCGCATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAATa > 3:628136/1‑141 (MQ=255) ccGTCACGACACGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAATACa < 2:1431205/141‑1 (MQ=255) aCTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAATACAGAAGCACg > 3:415755/1‑141 (MQ=255) CGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAATACAGAAGCACGTTc < 2:1184886‑M1/141‑1 (MQ=255) CGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAATACAGAAGCACGTTc > 4:251035‑M1/1‑141 (MQ=255) CGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAATACAGAAGCACGTTc > 2:1226094‑M1/1‑141 (MQ=255) | GAAGCTTTAGCAATTGGTAATACTTTTGTACCACCGCCAACGATTGCCAATGTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAATACAGAAGCACGTTC > USA300TCH1516_ALE/2681809‑2682089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |