Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000731 12,012 A→G 6.4% intergenic (+175/+48) USA300HOU_pUSA300HOUMR0014 → / ← USA300HOU_pUSA300HOUMR0015 recombinase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073112,0120AG 6.4% 1334.2 / 55.1 426intergenic (+175/+48)USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015recombinase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (199/198);  new base G (6/21);  total (205/221)
Fisher's exact test for biased strand distribution p-value = 5.12e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.94e-01

Only 100 of 431 total aligned reads displayed.

AAATAATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAA  >  CP000731/11872‑12151
                                                                                                                                            |                                                                                                                                           
    aatTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAAtt                                                                                                                                         <  3:207118/141‑1 (MQ=255)
    aatTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAAtt                                                                                                                                         >  4:443106/1‑141 (MQ=255)
      ttttATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCg                                                                                                                                       <  3:443106/141‑1 (MQ=255)
        ttATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTa                                                                                                                                     <  1:1282007/141‑1 (MQ=255)
        ttATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTa                                                                                                                                     >  2:302116/1‑141 (MQ=255)
         tatataTCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTAc                                                                                                                                    >  1:1447365/1‑141 (MQ=255)
          atatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACg                                                                                                                                   >  1:1475735/1‑141 (MQ=255)
          atatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACg                                                                                                                                   >  4:211879/1‑141 (MQ=255)
           tatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                                                                                                  <  1:100767/141‑1 (MQ=255)
           tatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                                                                                                  <  1:1404442/141‑1 (MQ=255)
           tatatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGc                                                                                                                                  <  2:472216/141‑1 (MQ=255)
            atatCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCt                                                                                                                                 <  3:554789/141‑1 (MQ=255)
                    aaCATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaat                                                                                                                         >  4:402806/1‑141 (MQ=255)
                      cATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatat                                                                                                                       <  1:289492/141‑1 (MQ=255)
                       aTACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatata                                                                                                                      >  1:1227714/1‑141 (MQ=255)
                        tACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataa                                                                                                                     <  3:621674/141‑1 (MQ=255)
                          cAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataata                                                                                                                   <  4:102192/141‑1 (MQ=255)
                           aaaGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                                                                                                  <  2:1514644/141‑1 (MQ=255)
                              gACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTg                                                                                                               >  3:343381/1‑141 (MQ=255)
                              gACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTg                                                                                                               >  1:994239/1‑141 (MQ=255)
                              aaCTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTg                                                                                                               <  1:708098/140‑1 (MQ=255)
                               aCTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTATAATCTCATAAGATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACTAATTCGTACGCTTTTTTAATATAATCCCTGt                                                                                                              <  2:265835/141‑1 (MQ=255)
                                cTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATCATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGtt                                                                                                             >  3:506005/1‑141 (MQ=255)
                                cTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGtt                                                                                                             >  3:695984/1‑141 (MQ=255)
                                cTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGtt                                                                                                             >  2:793125/1‑141 (MQ=255)
                                   tGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCa                                                                                                          >  2:658874/1‑141 (MQ=255)
                                   tGATTCAATGTCAATCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCa                                                                                                          <  4:653059/141‑1 (MQ=255)
                                    gATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCAc                                                                                                         >  4:527184/1‑141 (MQ=255)
                                    gATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCAc                                                                                                         <  3:277232/141‑1 (MQ=255)
                                     aTTCAATGTCACTCGATGTAAAAGAGACGTTCTAACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACt                                                                                                        <  2:1360494/141‑1 (MQ=255)
                                      ttCAATGTCACTCGATGTAAAAGAGACGATCTGACAGCGTCTAACATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTa                                                                                                       >  2:365470/1‑141 (MQ=255)
                                        cAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAAt                                                                                                     >  2:1250210/1‑141 (MQ=255)
                                        cAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAAt                                                                                                     <  1:580073/141‑1 (MQ=255)
                                          aTGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGa                                                                                                   >  1:524384/1‑141 (MQ=255)
                                          aTGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGa                                                                                                   <  1:167519/141‑1 (MQ=255)
                                           tGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGaa                                                                                                  >  2:716599/1‑141 (MQ=255)
                                            gTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAAc                                                                                                 <  1:1530806/141‑1 (MQ=255)
                                               aCTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGtt                                                                                              >  2:651906/1‑141 (MQ=255)
                                                cTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGttt                                                                                             <  1:655714/141‑1 (MQ=255)
                                                cTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGttt                                                                                             <  1:1547907/141‑1 (MQ=255)
                                                  cGATGTAAAAGAGACGTTCTGATTGCGTCTAAAATCTCATTATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATACCTACGATTTTTTAATAAAATACATGTTTCACTATTGAACGTATTa                                                                                           >  4:122447/1‑141 (MQ=255)
                                                  cGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTa                                                                                           >  1:401388/1‑141 (MQ=255)
                                                        aaaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                                                                                                  <  3:634830/112‑1 (MQ=255)
                                                         aaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCt                                                                                    >  2:1524918/1‑141 (MQ=255)
                                                          aaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataata                                                                                                                   >  1:838430/1‑109 (MQ=255)
                                                           agagACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtc                                                                                  <  1:940201/141‑1 (MQ=255)
                                                           agagACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtc                                                                                  <  1:1090825/141‑1 (MQ=255)
                                                                 gTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCAtt                                                                            >  2:410501/1‑141 (MQ=255)
                                                                   tCTGACAGCGTCTAATATCTCATAATATTGTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACCTTTTAAGTATCTTCATCATTaa                                                                          <  2:196231/141‑1 (MQ=255)
                                                                     tGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACt                                                                        <  3:168671/141‑1 (MQ=255)
                                                                      gACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTg                                                                       >  1:1580903/1‑141 (MQ=255)
                                                                      gACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTg                                                                       <  2:1111138/141‑1 (MQ=255)
                                                                           cGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACt                                                                  <  4:48481/141‑1 (MQ=255)
                                                                           cGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACt                                                                  <  1:1171673/141‑1 (MQ=255)
                                                                             tCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAg                                                                                         <  1:85563/116‑1 (MQ=255)
                                                                             tCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAg                                                                                         >  2:85563/1‑116 (MQ=255)
                                                                               tAAAATCTCATAATATTTTCCTGTTCTGAGATTTTAATAATAACACAAGAAAAAACCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACATTTTAAGTATCTTCATGATTAACTGAAACTACAg                                                              >  1:807380/1‑141 (MQ=255)
                                                                               tAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCtt                                                                                   >  4:37765/1‑120 (MQ=255)
                                                                               tAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAg                                                              >  4:189712/1‑141 (MQ=255)
                                                                               tAAAATCTCATAATATTGTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAg                                                              >  2:759410/1‑141 (MQ=255)
                                                                                 aaaTCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGta                                                            <  2:1555563/141‑1 (MQ=255)
                                                                                  aaTCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGtaa                                                           <  4:687818/141‑1 (MQ=255)
                                                                                   aTCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGtaat                                                          <  1:251215/141‑1 (MQ=255)
                                                                                    cctcaatatatTTACCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGtaata                                                         <  2:975153/134‑1 (MQ=255)
                                                                                        ataataTTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATAc                                                     >  2:1086442/1‑141 (MQ=255)
                                                                                        ataataTTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATAc                                                     >  2:1202008/1‑141 (MQ=255)
                                                                                           atatTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCg                                                  <  1:1349337/141‑1 (MQ=255)
                                                                                             atTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTc                                                >  2:173200/1‑141 (MQ=255)
                                                                                                   cTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAat                                          <  1:1612895/141‑1 (MQ=255)
                                                                                                   cTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAat                                          <  3:414110/141‑1 (MQ=255)
                                                                                                   atattATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTc                                                   <  4:162637/129‑1 (MQ=255)
                                                                                                     gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat                                        >  1:559551/1‑141 (MQ=255)
                                                                                                     gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat                                        >  1:765070/1‑141 (MQ=255)
                                                                                                     gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat                                        >  3:396709/1‑141 (MQ=255)
                                                                                                     gTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAatat                                        >  1:444903/1‑141 (MQ=255)
                                                                                                        aTGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAg                                     <  4:596085/141‑1 (MQ=255)
                                                                                                          gcgaTTTTAATAATAACACAAGACAAAAGCGTACAAATTCGTACGCTTTTTTCATATAATACCTGCTTCACTAATGACCGTTTTAAGTATCTTCATCATTAACTGAAACTACCGTAATAATACTCGTCAACAATATTAGta                                   <  2:556493/139‑1 (MQ=255)
                                                                                                          aaaaTTTTAATAATACCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTTAAACTACAGTGATAAAACTCGTCAACAATATTAGta                                   <  2:1325046/138‑1 (MQ=255)
                                                                                                            gaTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTCCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATAGTAGtata                                 >  4:242468/1‑141 (MQ=255)
                                                                                                             aTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAg                                <  1:630744/141‑1 (MQ=255)
                                                                                                             aTTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAg                                >  1:690458/1‑141 (MQ=255)
                                                                                                              ttttAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGt                               <  1:1141949/141‑1 (MQ=255)
                                                                                                              ttttAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGt                               <  1:920440/141‑1 (MQ=255)
                                                                                                              ttttAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGt                               >  3:130792/1‑141 (MQ=255)
                                                                                                               tttAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGtt                              >  1:467901/1‑141 (MQ=255)
                                                                                                                 taataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTaa                            <  4:615713/141‑1 (MQ=255)
                                                                                                                  aataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTaaa                           >  2:498500/1‑141 (MQ=255)
                                                                                                                    taataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAAt                         >  4:31803/1‑141 (MQ=255)
                                                                                                                    taataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAAt                         >  1:338543/1‑141 (MQ=255)
                                                                                                                      ataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAg                       <  2:346336/141‑1 (MQ=255)
                                                                                                                       taaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAGTATAATACCTGTTTCACTAACGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGa                      >  2:1428289/1‑141 (MQ=255)
                                                                                                                       taaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGa                      <  3:587405/141‑1 (MQ=255)
                                                                                                                           acaAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGACACTACAGTAGTAATACTCGTCAACAATATTAGTATAGTTAAAATAGaaaca                  >  2:1036798/1‑139 (MQ=255)
                                                                                                                               taaaaaaGCGTACGCATTTGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTa              >  2:569882/2‑141 (MQ=255)
                                                                                                                                   aaaGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGAc          <  2:1583415/141‑1 (MQ=255)
                                                                                                                                   aaaGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGAc          >  2:1450736/1‑141 (MQ=255)
                                                                                                                                     aGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTg        >  1:239661/1‑141 (MQ=255)
                                                                                                                                      gCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTgg       >  2:92112/1‑141 (MQ=255)
                                                                                                                                      gCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTgg       <  2:160502/141‑1 (MQ=255)
                                                                                                                                      gCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTgg       >  2:1143768/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                           
AAATAATTTTATATATCATTAACATACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATTAACTGAAACTACAGTAATAATACTCGTCAACAATATTAGTATAGTTAAAATAGAAAGACTTAGGACTGGCATAA  >  CP000731/11872‑12151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: