Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 970,686 T→A 5.1% intergenic (+32/‑297) USA300HOU_RS04805 → / → USA300HOU_RS04810 Ureidoglycolate lyase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE970,6860TA 5.1% 615.3 / 14.3 186intergenic (+32/‑297)USA300HOU_RS04805/USA300HOU_RS04810Ureidoglycolate lyase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (83/92);  new base A (2/8);  total (85/101)
Fisher's exact test for biased strand distribution p-value = 1.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 195 total aligned reads displayed.

AGCAGGCGTTGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAAT  >  USA300TCH1516_ALE/970546‑970825
                                                                                                                                            |                                                                                                                                           
agcagGCGTTGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTtatat                                                                                                                                             >  2:1378034/1‑141 (MQ=255)
agcagGCGTTGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTtatat                                                                                                                                             >  2:771844/1‑141 (MQ=255)
  cagGCGTTGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAg                                                                                                                                           >  3:402803/1‑141 (MQ=255)
    ggCGTTGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGAt                                                                                                                                         >  3:177459/1‑141 (MQ=255)
        ttGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGt                                                                                                                                     >  4:121563/1‑141 (MQ=255)
        ttGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAACTAACCAATCTATATAAAGACTGGt                                                                                                                                     <  3:486621/141‑1 (MQ=255)
        ttGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGATGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGt                                                                                                                                     <  2:1280894/141‑1 (MQ=255)
        ttGGTGCAGGTATGAAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAACTAAACAATATATATAAAGACTGGt                                                                                                                                     <  2:341392/141‑1 (MQ=255)
        ttGGTGCAGGTACGCAACCCCCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCCCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGt                                                                                                                                     <  2:1403098/141‑1 (MQ=255)
         tGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGtt                                                                                                                                    <  1:219736/141‑1 (MQ=255)
          ggTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTa                                                                                                                                   <  2:269724/141‑1 (MQ=255)
           gTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAg                                                                                                                                  <  2:1199704/141‑1 (MQ=255)
               aGGTATGCAACCACCTAAATTACTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAATCTATATAAAGACTGGTTAGcttt                                                                                                                              <  1:783492/141‑1 (MQ=38)
                ggTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGttttt                                                                                                                             >  1:338656/1‑141 (MQ=255)
                ggTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGttttt                                                                                                                             >  1:1115034/1‑141 (MQ=255)
                ggTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCATTATATAGATTGGTTAGttttt                                                                                                                             >  3:5344/1‑141 (MQ=255)
                 gTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAACTAACCAATCTATATAAAGACTGGTTAGcttttt                                                                                                                            <  1:144047/141‑1 (MQ=38)
                  tATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTc                                                                                                                           <  1:604062/141‑1 (MQ=255)
                    tGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCtt                                                                                                                         >  1:597482/1‑141 (MQ=255)
                    tGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCtt                                                                                                                         >  1:741582/1‑141 (MQ=255)
                     gCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTACATAATTGTCATTTAAAAAGCTACGCAGTCTTTATATAGATTGGTTAGTTTTTTCTTg                                                                                                                        >  2:171574/1‑141 (MQ=255)
                     gCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAACTAACCAATCTATATAAAGACTGGTTAGctttttaaat                                                                                                                        <  4:549499/141‑5 (MQ=37)
                        accaccTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCtt                                                                                                                     >  3:237304/1‑141 (MQ=255)
                        accaccTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCATTATATCGATTGCTTTATTTTTTCTTGCtt                                                                                                                     >  1:509449/1‑141 (MQ=255)
                         ccaccTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAGAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCttt                                                                                                                    <  2:117947/141‑1 (MQ=255)
                         ccaccTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCttt                                                                                                                    <  2:251972/141‑1 (MQ=255)
                         acaccTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCttt                                                                                                                    <  2:1509672/140‑1 (MQ=255)
                          caccTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCtttt                                                                                                                   >  1:971514/1‑141 (MQ=255)
                               aaaTTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTaaa                                                                                                              >  1:1364516/1‑141 (MQ=255)
                                aaTTTTTACAACTAGGTGATTAAGTTAAAGTGACTATTGATTATATTGGAACGCTAACAAATTATATCGCTAAATAATTATCATTTAAAAAGCTAGCCATTCTTTATATAGATTGGTCAGTTTTTTCTTGCTTTTCTaaaa                                                                                                             <  2:1431313/141‑1 (MQ=255)
                                   ttttACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAgg                                                                                                          >  1:120403/1‑141 (MQ=255)
                                      tACAAGCAAGTGATGAAGTTAAAGTGACTATGGATAATATTGGAACGCTGACCACTGATATCGCTAAATAATTATCAGTTAAAAAGCTAACCAGACAGTAAATAGATCGGTTAGTTTTTGCGTGCTTGTCTAAAAAGgtgt                                                                                                       <  2:875718/141‑1 (MQ=255)
                                      tACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGgtgt                                                                                                       <  1:1655243/141‑1 (MQ=255)
                                       aCAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGtt                                                                                                      >  3:362103/1‑141 (MQ=255)
                                       aCAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGtt                                                                                                      >  2:926991/1‑141 (MQ=255)
                                       aCAACCAGGTGATGAAGATAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGtt                                                                                                      >  1:32206/1‑141 (MQ=255)
                                        cAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTa                                                                                                     >  2:987873/1‑141 (MQ=255)
                                           ccAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTCTATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAg                                                                                                  >  1:504436/1‑141 (MQ=255)
                                           ccAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAg                                                                                                  <  3:86680/141‑1 (MQ=255)
                                             aGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGAt                                                                                                <  1:1524758/141‑1 (MQ=255)
                                              ggTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGAATGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTGAAGATa                                                                                               >  2:1582426/1‑141 (MQ=255)
                                                 gatgaAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAat                                                                                            <  1:799617/141‑1 (MQ=255)
                                                 gatgaAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAat                                                                                            <  2:576027/141‑1 (MQ=255)
                                                  atgaAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAatt                                                                                           <  2:1325252/141‑1 (MQ=255)
                                                   tgaAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAatta                                                                                          >  1:932116/1‑141 (MQ=255)
                                                    gaAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAattat                                                                                         >  2:376105/1‑141 (MQ=255)
                                                    gaAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAattat                                                                                         >  1:359286/1‑141 (MQ=255)
                                                      aGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAAttattt                                                                                       >  3:64842/1‑141 (MQ=255)
                                                      aGTCAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATAGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTCTTAAAGATAACttattt                                                                                       >  2:620892/1‑141 (MQ=255)
                                                       gTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCGAAAAAGGTGTTAAAGATAAAttattta                                                                                      <  1:9035/141‑1 (MQ=255)
                                                            aGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATg                                                                                 <  2:1359650/141‑1 (MQ=255)
                                                              tGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGtt                                                                               <  1:1544261/141‑1 (MQ=255)
                                                               gaatATTGATAATATTTGATTGCTGACATCTTAGATCGCTAAATAATTATCTTTTAAAAAGCTAACAAATCTTTATATAGATTAGTTAGATTTTTCGTTCTTTTCTAAAAATCTGTTAAAGATAAATTATTTATAATGTTa                                                                              <  2:760401/138‑1 (MQ=255)
                                                               gACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGtt                                                                                                                                    <  1:535861/87‑1 (MQ=255)
                                                                aCTATTGATAATAGTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTAc                                                                             <  1:1574950/141‑1 (MQ=255)
                                                                 cTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTAcc                                                                            >  3:705693/1‑141 (MQ=255)
                                                                    ttGATAATATTGGAACGCTGACAAAATATATCGCTAAATAATTATCATTTAAAAAGCTAAACAGTTTTTATATAGATTGGTTAGTTTTTTTTTGATTTTCTAAAAAGGTGTTAAAGATAATTTATTTATAATGATATCAtt                                                                         >  2:351735/1‑141 (MQ=255)
                                                                      gATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGATAAACTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCAtttt                                                                       <  2:947012/141‑1 (MQ=255)
                                                                      gATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTCGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCAtatt                                                                       >  4:671995/1‑141 (MQ=255)
                                                                           tatTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTa                                                                                                                <  1:1268695/95‑1 (MQ=255)
                                                                            atTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATg                                                                 >  2:85840/1‑141 (MQ=255)
                                                                            atTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATg                                                                 <  1:1020996/141‑1 (MQ=255)
                                                                            atTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATg                                                                 >  1:1602544/1‑141 (MQ=255)
                                                                                 aaCGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGt                                                            <  3:375936/141‑1 (MQ=255)
                                                                                  aCGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTg                                                           <  1:306882/141‑1 (MQ=255)
                                                                                  aCGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTg                                                           <  2:738612/141‑1 (MQ=255)
                                                                                  aCGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTg                                                           <  1:825417/141‑1 (MQ=255)
                                                                                  aCGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTg                                                           <  3:687704/141‑1 (MQ=255)
                                                                                   cGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGa                                                          <  1:1334301/141‑1 (MQ=255)
                                                                                      tGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAat                                                       >  2:306206/1‑141 (MQ=255)
                                                                                         cAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATAtt                                                    <  3:121563/141‑1 (MQ=255)
                                                                                         cAACTTATATCGATAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCATTACAAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATAtt                                                    <  2:388713/141‑1 (MQ=255)
                                                                                           aCTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGa                                                  <  2:1169637/141‑1 (MQ=255)
                                                                                              tataTCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGatat                                               <  2:1115034/141‑1 (MQ=255)
                                                                                                tatCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTa                                             <  1:673381/141‑1 (MQ=255)
                                                                                                 atCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAACTTCTCTATAATGCTACAGCTATCACATGAAAGAGACCTCTTGATATTaa                                            >  1:1396081/1‑141 (MQ=255)
                                                                                                   cGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTaaga                                          <  4:246688/141‑1 (MQ=255)
                                                                                                   cGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTaaga                                          <  2:597482/141‑1 (MQ=255)
                                                                                                   cGCTAAATAATGATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTGTTCTAAACAGGTGATAAAGATAAATTATATATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATCTTaaga                                          <  4:339719/141‑1 (MQ=255)
                                                                                                     cTAAATAATTATCATTTAAAAAGCTAACCAGACTTTATATAGATTGGTTATTTTTTTCTTGCTTTCCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGATATGAAAGTGAAATATTTATTTTaagaat                                        >  4:286941/1‑140 (MQ=255)
                                                                                                        aataatTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAagtag                                     <  1:1063349/141‑1 (MQ=255)
                                                                                                         ataatTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAagtagt                                    <  2:1494360/141‑1 (MQ=255)
                                                                                                         ataatTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAagtagt                                    <  2:451276/141‑1 (MQ=255)
                                                                                                             ttATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGat                                >  2:684927/1‑141 (MQ=255)
                                                                                                              tATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGatt                               >  2:477219/1‑141 (MQ=255)
                                                                                                              tATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTGTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAAGTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTTatt                               >  1:1247481/1‑141 (MQ=255)
                                                                                                                  aTTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTAttt                           <  3:28058/141‑1 (MQ=255)
                                                                                                                           gCTAACCAGTCTTTATATAGATTGGTTAGTTTGTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGa                  <  3:266734/141‑1 (MQ=255)
                                                                                                                                ccAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTcac             <  1:808788/141‑1 (MQ=255)
                                                                                                                                  aGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCCGATTCACaa           <  1:1454879/141‑1 (MQ=255)
                                                                                                                                   gTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAat          <  1:730163/141‑1 (MQ=255)
                                                                                                                                   gTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAACAAGTAGTTGATTATTTTACAGCAGATTCACAat          <  3:338659/141‑1 (MQ=255)
                                                                                                                                    tCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAata         >  2:314726/1‑141 (MQ=255)
                                                                                                                                     cTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAatat        <  2:1260539/141‑1 (MQ=255)
                                                                                                                                      tttATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTAATCATAATAAGTAGTTGATTATTTTACAGCAGATTCACAATAtt       <  1:1621052/141‑1 (MQ=255)
                                                                                                                                        tatataGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAatta                                                                                          <  3:426710/56‑1 (MQ=255)
                                                                                                                                        tatataGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAatta                                                                                          >  4:426710/1‑56 (MQ=255)
                                                                                                                                        tatataGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCt     >  2:1036485/1‑141 (MQ=255)
                                                                                                                                         atataGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGa                                                  <  2:524671/95‑1 (MQ=255)
                                                                                                                                           ataGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCtaat  <  2:117776/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
AGCAGGCGTTGGTGCAGGTATGCAACCACCTAAATTTTTACAACCAGGTGATGAAGTTAAAGTGACTATTGATAATATTGGAACGCTGACAACTTATATCGCTAAATAATTATCATTTAAAAAGCTAACCAGTCTTTATATAGATTGGTTAGTTTTTTCTTGCTTTTCTAAAAAGGTGTTAAAGATAAATTATTTATAATGTTACCATTTTGAGATGAAAGTGAAATATTGATATTAAGAAGTAGTTGATTATTTTACAGCAGATTCACAATATTCTAAT  >  USA300TCH1516_ALE/970546‑970825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: