| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,042,789 | T→C | 5.6% | intergenic (+19/+70) | tagE_3 → / ← catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,042,789 | 0 | T | C | 5.6% | 492.8 / 12.5 | 164 | intergenic (+19/+70) | tagE_3/catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Reads supporting (aligned to +/- strand): ref base T (74/80); new base C (4/6); total (78/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.10e-01 | |||||||||||
Only 100 of 167 total aligned reads displayed.
TTCAGCTTGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGATATGTAT > USA300TCH1516_ALE/1042649‑1042927 | ttCAGCTTGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTAt < 3:423222/141‑1 (MQ=255) tCAGCTTGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTAtt > 1:562337/1‑141 (MQ=255) ttGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGa < 1:442177/141‑1 (MQ=255) gTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGaat < 1:810485/141‑3 (MQ=255) ttAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa > 1:302774/1‑141 (MQ=255) taataaTGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc > 4:597313/1‑141 (MQ=255) aataatGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAcc < 2:469196/141‑1 (MQ=255) ataatGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:7644/141‑1 (MQ=255) aatGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAg > 1:936734/1‑141 (MQ=255) aatGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAAAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGACAAAATCCTAGGTATTCATGAGTACCTAg < 4:122234/141‑1 (MQ=255) gatgTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGTAAAAATCCTAGGTACTCATGAATACCTAGGAt < 1:1105699/141‑1 (MQ=255) gatgTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAt < 1:1118275/141‑1 (MQ=255) ggaTTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATATAAAAATATTCAACGGAATTAATATAAGAAAAATGGTTAAATCTTTTCAATAGCCAAATGAAACAAGACTAGGCACTCATGGGTACATAGGaagtt > 4:474180/3‑137 (MQ=255) gTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtttt > 1:1231814/1‑141 (MQ=255) aTTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAGAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTa > 2:237959/1‑141 (MQ=255) aTTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTa > 1:1491192/1‑141 (MQ=255) ttAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAc > 1:1054238/1‑141 (MQ=255) ttAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAc < 1:1330321/141‑1 (MQ=255) ttAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAACTAAGATTTTTaa > 2:38828/1‑140 (MQ=255) tAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACg < 1:587509/141‑1 (MQ=255) agcagcGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGc > 1:1079917/1‑141 (MQ=255) cGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGAt > 3:183129/1‑141 (MQ=255) cGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATg > 2:1540306/1‑116 (MQ=255) cGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATg < 1:1540306/116‑1 (MQ=255) aGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATATTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACATAGGATTTTTACGCATAATaaa > 3:575541/1‑141 (MQ=255) gTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 1:1621645/141‑1 (MQ=255) gTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 2:1310414/141‑1 (MQ=255) gTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 1:274290/141‑1 (MQ=255) gTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 1:426906/141‑1 (MQ=255) tttGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa > 1:51787/1‑141 (MQ=255) ttgggTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa < 2:467014/138‑1 (MQ=255) ggTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaa < 1:774509/141‑1 (MQ=255) ggTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaa < 3:578533/141‑1 (MQ=255) gAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaaaa < 3:303675/141‑1 (MQ=255) aaaGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAag > 4:267712/1‑141 (MQ=255) gaAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAg > 1:122448/1‑141 (MQ=255) aaaaCATAATAGAAAAATATAAAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGAAAAAAAAAAAAAAAAAAAGAGAGGATAGt < 2:1384077/141‑1 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGACAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATCCAAAAAAAGAGAGGATAGTCct > 1:493284/1‑141 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGactatcct < 1:945284/141‑8 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCct > 2:540528/1‑141 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAACGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAAGCATGATAAATACAAAAAAAGAGAGGATAGTCct > 2:1046319/1‑141 (MQ=255) aTTAAAGAAAAAGATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCctct < 2:1086062/141‑1 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTATGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAAACAAAAAAAGAGAGGATAGTCCtctc < 2:1640025/141‑1 (MQ=255) tataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCa < 3:536902/141‑1 (MQ=255) tataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCa < 3:147574/141‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaaa > 2:191330/1‑141 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaaa < 2:873718/141‑1 (MQ=255) taGAAAAAAACATAACGGAATCAATATTAGAAAAATGGGTAAACCATTGCAATAGCTAAAAGAAAAAAACATAGGTATTCATGAATACCTACGATTATTACGCGCGATAAAGACAAAAAAAGATAGGATAGTCCACTCcaa > 2:591839/1‑141 (MQ=255) aaaaaaaaaaaTCAACGAAATCAATATTAAAAAAATGGATAAATATTTACAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAAAAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCaaa < 2:986990/138‑1 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAAc > 2:1450986/1‑141 (MQ=255) aaaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAAt > 2:849975/1‑141 (MQ=255) atTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 2:825550/1‑141 (MQ=255) atTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 4:208892/1‑141 (MQ=255) atTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 2:317254/1‑141 (MQ=255) ttCAACGAAATCAACATTAGAAAAATGGTTAAATCTTATCAATAGCTAAATGAAAAAATGCTAGGTATCCATGAGTACCTAGGATTTTAACACATGCGAAATACAAAAAAAGATAGGATCGTGCTCTGAAACCATAGttca > 4:197286/1‑139 (MQ=255) taaaCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAAGAAAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaat < 4:563243/139‑1 (MQ=255) tCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaat < 3:508724/141‑1 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaata < 1:1225600/141‑1 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaata > 3:611097/1‑141 (MQ=255) aaaCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATAATAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaata < 2:782853/140‑1 (MQ=255) aCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa > 2:1017086/1‑141 (MQ=255) gaaaTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAt < 3:581051/139‑1 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGt < 1:165464/141‑1 (MQ=255) aaTATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAGGCATGATAACTACAAAAAAAGAGAGGAAAGTCCTCTCAAACAATAGTCAATAAAATTGTAGc > 2:1290899/1‑141 (MQ=255) atatTAGATAAATGGTTAAATCTTTTCAATAGCTAAATGAAATAATCCTAGGTATTCATGAGTAACTAGGATTTTTACGAAAAAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGcc < 2:1582438/141‑1 (MQ=255) atTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCGTAAGAAAGACAAAAAAAGAGAGGATAGTCCTCTCAAACAATCATTCATAAAATTGCAGCCAt > 3:365948/1‑141 (MQ=255) atTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt < 1:1017086/141‑1 (MQ=255) aaaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttcttc > 4:410610/1‑141 (MQ=255) aaaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttcttc > 3:34020/1‑141 (MQ=255) aaaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttcttc > 2:1414765/1‑141 (MQ=255) aTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAg > 1:127168/1‑141 (MQ=255) tGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGc < 4:183129/141‑1 (MQ=255) aggTAAAATCATATCAAAAGCTAAAAGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAAAAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGc < 4:513659/140‑1 (MQ=255) ttAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGt > 1:677301/1‑141 (MQ=255) aaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAac < 3:365238/141‑1 (MQ=255) tCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAacta < 4:346971/141‑1 (MQ=255) tCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAacta < 1:200884/141‑1 (MQ=255) ttCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTaa > 1:1425921/1‑141 (MQ=255) tgaaTAANTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGAAAAATAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAAt < 2:1246278/139‑1 (MQ=255) tCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAAt < 2:690582/141‑1 (MQ=255) gCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGc > 1:1198928/1‑141 (MQ=255) gCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGc > 3:228535/1‑141 (MQ=255) tAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTa < 1:1371873/141‑1 (MQ=255) aaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTaac > 4:483698/1‑140 (MQ=255) aaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAg > 1:247970/1‑141 (MQ=255) aaaaaaaaaTCCTAGGTATACATGAGTACCTAAGAATGTTACGAATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGt < 2:995458/138‑1 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATATATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATCCAAGCTAAGt > 1:1250844/1‑141 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGt > 1:1250858/1‑141 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGt > 3:324394/1‑141 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATAATAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGt < 2:1061889/141‑1 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCAtt > 2:1495582/1‑141 (MQ=255) aaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCACGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTAc > 2:291994/1‑141 (MQ=255) aTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACg > 3:688487/1‑141 (MQ=255) aTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACg > 1:792319/1‑141 (MQ=255) tCCTAGGTATTTATTAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTGTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGa < 1:945831/141‑1 (MQ=255) tCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGa < 3:267712/141‑1 (MQ=255) ccTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGat > 4:450217/1‑141 (MQ=255) tAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGatat > 3:687973/1‑141 (MQ=255) tAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGatat > 1:802689/1‑141 (MQ=255) aGGTACTCATGAGTACCTAGGAGTCTTACTCATGATAAATAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGAtatg < 4:575541/141‑1 (MQ=255) | TTCAGCTTGTTAATAATGATGTATTAGCAGCGGAGTTTGGTTCGAAAGCGAGAGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAGCTGTAACTACTAATACAAGCTAAGTTCATTACGATATGTAT > USA300TCH1516_ALE/1042649‑1042927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |