Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 2,530,791 C→T 5.1% intergenic (‑42/+231) yefM ← / ← bdbD Antitoxin YefM/Disulfide bond formation protein D

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,530,7910CT 5.1% 548.3 / 12.2 169intergenic (‑42/+231)yefM/bdbDAntitoxin YefM/Disulfide bond formation protein D
Reads supporting (aligned to +/- strand):  ref base C (80/80);  new base T (5/4);  total (85/84)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01

Only 100 of 173 total aligned reads displayed.

ATCAGTAGATGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCATACATTAA  >  USA300TCH1516_ALE/2530651‑2530931
                                                                                                                                            |                                                                                                                                            
   aGTAGATGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAGATATTTGt                                                                                                                                           <  3:370769/141‑1 (MQ=255)
   aGTAGATGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGCCGGGCGTATGAACAATTTTTAATAATCATACTTATCGCCTCCTTTTAGCTCACCTCAATTGTACAAATATTTGt                                                                                                                                           <  2:688410/141‑1 (MQ=255)
    gTAGATGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAGATATTTGTa                                                                                                                                          <  4:372617/141‑1 (MQ=255)
       gATGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACaa                                                                                                                                       <  2:239292/141‑1 (MQ=255)
       gATGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACaa                                                                                                                                       <  4:265027/141‑1 (MQ=255)
        aTGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAAt                                                                                                                                      <  1:1184040/141‑1 (MQ=255)
        aTGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAAt                                                                                                                                      <  1:1184187/141‑1 (MQ=255)
          gTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATaa                                                                                                                                    >  4:406656/1‑141 (MQ=255)
           ttACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATaaa                                                                                                                                   >  1:1391318/1‑141 (MQ=255)
            tACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATaaaa                                                                                                                                  >  2:441934/1‑141 (MQ=255)
             aCAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAAc                                                                                                                                 >  4:480729/1‑141 (MQ=255)
              cAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAGATATTTGTACAAttgaggc                                                                                                                                >  1:962062/1‑135 (MQ=255)
                    ccATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGac                                                                                                                          >  1:458733/1‑141 (MQ=255)
                      aTAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGacac                                                                                                                        <  1:857573/141‑1 (MQ=255)
                        aaCATTATCACCATTTACTTTTATCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAg                                                                                                                      <  2:61357/141‑1 (MQ=255)
                         acacTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGa                                                                                                                     <  1:1258932/141‑1 (MQ=255)
                         acacTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGa                                                                                                                     >  3:664837/1‑141 (MQ=255)
                         acacTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGa                                                                                                                     <  3:186160/141‑1 (MQ=255)
                         acacTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGa                                                                                                                     <  2:770189/141‑1 (MQ=255)
                          cacTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGaa                                                                                                                    <  2:455121/141‑1 (MQ=255)
                             tATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGaaaaa                                                                                                                 <  2:1601508/141‑1 (MQ=255)
                              atcatcATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGaaaaaa                                                                                                                >  2:188153/1‑141 (MQ=255)
                               tcatcaTTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGaaaaaaa                                                                                                               >  2:698627/1‑141 (MQ=255)
                                   catTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAactac                                                                                                           <  1:787009/141‑1 (MQ=255)
                                   catTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAactac                                                                                                           <  4:196739/141‑1 (MQ=255)
                                      ttACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTaa                                                                                                        >  1:55807/1‑141 (MQ=255)
                                       tACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAAt                                                                                                       <  1:272997/141‑1 (MQ=255)
                                         cTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCa                                                                                                     >  2:33068/1‑141 (MQ=255)
                                          ttttGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCaa                                                                                                    <  1:1133867/141‑1 (MQ=255)
                                             tGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGAt                                                                                                 <  2:914202/141‑1 (MQ=255)
                                             tGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCACAATTGAACAAATATCTGTACAATAAAACAAACGACACAGAAAAAAACTACTAATCAAGAt                                                                                                 <  4:66543/141‑1 (MQ=255)
                                              ggcATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACAACTAATCAAGAtt                                                                                                >  2:922480/3‑141 (MQ=255)
                                              gTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGAtt                                                                                                >  2:1479573/1‑141 (MQ=255)
                                              gTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGAtt                                                                                                >  1:1116261/1‑141 (MQ=255)
                                              gTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGAtt                                                                                                <  1:713018/141‑1 (MQ=255)
                                                 aTAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCg                                                                                             <  1:1110625/141‑1 (MQ=255)
                                                        ccTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACgggg                                                                                      <  1:696441/141‑1 (MQ=255)
                                                         ctgtAAATTCTGTCGACCGAACGAATACTTTTTAATACGCAAATTTATCGCGTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAATAACACTACTAACCAAGATTTCGCACGAGga                                                                                     >  4:612254/4‑141 (MQ=255)
                                                         cTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAATACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGga                                                                                     <  4:505049/141‑1 (MQ=255)
                                                         cTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGga                                                                                     <  1:1602200/141‑1 (MQ=255)
                                                           ttAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGgaag                                                                                   <  1:175415/141‑1 (MQ=255)
                                                           ttAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAAAAAAAAAAAAAAAAACTACTAATCAAGATTTCGCACGGGgaag                                                                                   <  2:372149/141‑1 (MQ=255)
                                                            tgaagccTGCCGAGCGTAGGAATACTGCTTAATTTTCATGTCTATCGCCTCCTTGTAACAGCCCTCAATTGTACAAATATCTGTAAAATACAACAGGCGAGACAGAATAACACTACTGATCAACAGTTCGCCCTGGgcaga                                                                                  >  4:114446/7‑141 (MQ=255)
                                                             aaaTTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGgaagaa                                                                                 <  1:1630475/141‑1 (MQ=255)
                                                             aaaTTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGAAAAAGAAAAAAACTACTAATCAAGATTTCGCACGGGgaagaa                                                                                 <  2:1139064/141‑1 (MQ=255)
                                                                ttCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCCACACAGAAAAGAACTACTAATCAAGATTTCGCACGGGGAAGAATCa                                                                              <  1:1447300/141‑1 (MQ=255)
                                                                  cTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAAt                                                                            <  1:1319108/141‑1 (MQ=255)
                                                                  cTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAAt                                                                            >  1:112166/1‑141 (MQ=255)
                                                                  cTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAAt                                                                            >  3:350308/1‑141 (MQ=255)
                                                                   tGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATa                                                                           <  3:223862/141‑1 (MQ=255)
                                                                      cGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCt                                                                        >  1:756643/1‑141 (MQ=255)
                                                                      cGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTCTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCt                                                                        <  2:1606848/141‑1 (MQ=255)
                                                                       gAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTa                                                                       <  1:1318203/141‑1 (MQ=255)
                                                                         gCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATGAATACCTATc                                                                     >  2:100085/1‑141 (MQ=255)
                                                                         gCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATc                                                                     >  2:1011315/1‑141 (MQ=255)
                                                                           gTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATGAAGATTTCGCACGGGGAAGAATCAATACCTATCCt                                                                   <  1:1447833/141‑1 (MQ=255)
                                                                                 ataatTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTg                                                             <  1:622816/141‑1 (MQ=255)
                                                                                 ataatTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTg                                                             >  2:267674/1‑141 (MQ=255)
                                                                                  taatTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGa                                                            <  2:126561/141‑1 (MQ=255)
                                                                                         taataaTCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCcta                                                     <  1:22385/141‑1 (MQ=255)
                                                                                          aataatCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCctac                                                    >  1:121810/1‑141 (MQ=255)
                                                                                           ataatCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCctact                                                   <  2:278645/141‑1 (MQ=255)
                                                                                              atCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTaaa                                                >  1:561120/1‑141 (MQ=255)
                                                                                               tCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAAc                                               >  1:1504389/1‑141 (MQ=255)
                                                                                                cATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACa                                              <  1:331411/141‑1 (MQ=255)
                                                                                                 atatTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACaa                                             <  1:100085/141‑1 (MQ=255)
                                                                                                   atTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATg                                           >  1:915463/1‑141 (MQ=255)
                                                                                                    tttATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGa                                                            >  1:1045169/1‑123 (MQ=255)
                                                                                                        tCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTAc                                      >  2:308016/1‑141 (MQ=255)
                                                                                                        tCGCCTCCTTTTAACACACCTCAATTGTACAAATATCCGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTAc                                      <  2:1434898/141‑1 (MQ=255)
                                                                                                          gCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACAt                                    <  1:535185/141‑1 (MQ=255)
                                                                                                            ctcctTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGa                                  <  2:1572283/141‑1 (MQ=255)
                                                                                                               ctTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATaa                               <  3:562344/141‑1 (MQ=255)
                                                                                                                 tttAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAAtt                             >  2:643515/1‑141 (MQ=255)
                                                                                                                   tAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGt                                                                 >  1:316258/1‑103 (MQ=255)
                                                                                                                   tAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGAt                                 <  1:1549367/135‑1 (MQ=255)
                                                                                                                   tAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGAt                                 >  2:1549367/1‑135 (MQ=255)
                                                                                                                    aaCACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTcc                          >  3:665334/1‑141 (MQ=255)
                                                                                                                     acacccCTCAATTGTACAAATATCTGTACAATAAAACAAGAGACACCGAAAACACCGGCTCATAAAGATTAAGCACGGGGAAGAAGCAATACCTATCCTGTACGGATTCCCTACTAAACAATGTTTACATGATAATTTCCa                         <  1:328652/141‑1 (MQ=255)
                                                                                                                     acacacCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCa                         >  2:411473/1‑141 (MQ=255)
                                                                                                                     acacacCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCa                         >  2:1370885/1‑141 (MQ=255)
                                                                                                                      cacacCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCAc                        >  1:1027073/1‑141 (MQ=255)
                                                                                                                        cacCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCt                      >  3:109723/1‑141 (MQ=255)
                                                                                                                        cacCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCt                      >  4:182585/1‑141 (MQ=255)
                                                                                                                         acCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTa                                                                >  3:413689/1‑98 (MQ=255)
                                                                                                                         acCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTa                                                                <  4:413689/98‑1 (MQ=255)
                                                                                                                         acCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTa                     >  3:280211/1‑141 (MQ=255)
                                                                                                                             cAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTa                 >  2:1060842/1‑141 (MQ=255)
                                                                                                                               aTTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAATCTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGa               <  2:868924/141‑1 (MQ=255)
                                                                                                                                ttGTACAGATATTTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGAc              >  2:306081/1‑141 (MQ=255)
                                                                                                                                ttGTACAGATATTTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGAc              >  4:458433/1‑141 (MQ=255)
                                                                                                                                ttGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGAc              <  2:1330538/141‑1 (MQ=255)
                                                                                                                                    aCAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCa          >  2:526806/1‑141 (MQ=255)
                                                                                                                                     cAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCAt         >  2:58747/1‑141 (MQ=255)
                                                                                                                                     cAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCAt         >  2:1416551/1‑141 (MQ=255)
                                                                                                                                        atatCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCATACa      <  1:915697/141‑1 (MQ=255)
                                                                                                                                          atCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCATACAtt    >  1:3514/1‑141 (MQ=255)
                                                                                                                                           tCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCATACATTa   <  3:255102/141‑1 (MQ=255)
                                                                                                                                            cTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCATACATTaa  >  2:1325596/1‑141 (MQ=255)
                                                                                                                                            cTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCATACATTaa  >  4:616533/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATCAGTAGATGTTACAGTTACCATAACACTATCATCATTTACTTTTGTCATAAGTGCCTTTAAATTCTGTCGAGCGTATGAATAATTTTTAATAATCATATTTATCGCCTCCTTTTAACACACCTCAATTGTACAAATATCTGTACAATAAAACAAGCGACACAGAAAAAAACTACTAATCAAGATTTCGCACGGGGAAGAATCAATACCTATCCTGTACTGATTCCCTACTAAACAATGTTTACATGATAATTTCCACCTATTTAGACTTCATACATTAA  >  USA300TCH1516_ALE/2530651‑2530931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: