| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 618,588 | G→A | 5.2% | S1230S (TCG→TCA) | sdrD → | Serine‑aspartate repeat‑containing protein D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 618,588 | 0 | G | A | 5.2% | 935.4 / 2.5 | 403 | S1230S (TCG→TCA) | sdrD | Serine‑aspartate repeat‑containing protein D |
| Reads supporting (aligned to +/- strand): ref base G (178/179); new base A (25/14); total (205/198) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.51e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.68e-01 | |||||||||||
Only 100 of 408 total aligned reads displayed.
CAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCG > USA300TCH1516_ALE/618455‑618721 | gattcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGa < 1:2366505/134‑1 (MQ=255) attcagatagagatgaagaTTCAGATAGTGATGCAGACTGAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGAc < 2:1505677/134‑1 (MQ=14) attcagacagcgactcagaCTCAGATAGTGATTCAGACTCAGATAGTGACTCAGATTTATATAGCGAATCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGAc < 1:7668/134‑1 (MQ=17) acagcgactcagaCTCAGATATTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGAt < 1:2035737/134‑1 (MQ=255) agcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTTAGACATCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTc < 2:1734698/134‑1 (MQ=255) gcgactcagaCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGTGATTCa > 1:1169298/1‑134 (MQ=255) tcatgctcagaTAGGGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTc < 2:2037952/129‑1 (MQ=255) tcagactcagaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGAAAGTGACTCAGATTCAGATAGCCACTCAGACTCGGCCAGCGATTCAGCCTc > 1:1204333/1‑134 (MQ=14) agactcagaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAACGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAg > 1:975527/1‑134 (MQ=255) cagaTAGTGATTGAGACTCAGATAGCGGCTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGc < 1:1095490/134‑1 (MQ=255) gaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGa < 1:525457/134‑1 (MQ=255) aGTGATTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACACAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtc < 2:1129062/134‑1 (MQ=255) gATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGCCTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcaga > 1:1373810/1‑134 (MQ=255) tCATACTCAGATAGTGTCTCGGAAGCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattc < 2:1147873/134‑1 (MQ=14) cAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattca < 2:2710329/134‑1 (MQ=255) gattCAGATAGCGACTTAGATTAAGACAGCGACTCAGACTCAGACAGTGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcaga < 2:1774816/131‑1 (MQ=255) gACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcaga > 2:2772987/1‑134 (MQ=255) gACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACGCAGATTCAGATAGCGACTCAGATTCGGACAGAGATTCAGACTCATATAGCGACtcagattcaga < 1:558975/134‑1 (MQ=255) aCTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcagat > 1:862141/1‑134 (MQ=255) aCTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACACAGATACGGACAGCGATTCAGACTCAGATAGCGACtcagattcagat > 1:1685558/1‑134 (MQ=255) cTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATa > 1:2306332/1‑134 (MQ=255) aaaacaGCGAATCAGATTTAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGc < 1:2527623/129‑1 (MQ=255) aGATAGCGACTCAGATTCCGACAGCGATTCAGACTCAGACATCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCg < 1:445611/134‑1 (MQ=255) gATAGCGACTTAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGa < 2:2687478/134‑1 (MQ=255) agggACTGAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTc < 2:1442018/131‑1 (MQ=255) aGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGACTCAGATAGCGACTCAGATTCAAACAGCCATCTATTCATATTTAGCGACTCAGATTCAGATAGCGAtac > 2:599762/1‑132 (MQ=14) aGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGAATCAGATAGCGAATCAAACTCAGACAGCGAATCAGACACAAATAGCGACTCAGATTCAGAGAGAGACTc > 2:2376962/1‑134 (MQ=11) gCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCg < 1:2452450/134‑1 (MQ=255) gACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGa < 1:1323270/134‑1 (MQ=255) aCTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGAc < 1:1764984/134‑1 (MQ=255) aTTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGAt > 1:2052678/1‑134 (MQ=255) aTTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGAt < 1:1430401/134‑1 (MQ=255) ttCATACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATa < 1:371315/134‑1 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa > 1:1003564/1‑134 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa > 1:2559412/1‑134 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa > 1:1702488/1‑134 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa > 1:1158070/1‑134 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa < 1:1854286/134‑1 (MQ=255) acagcgactcagactcagacagcgactcagactcagATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGAc < 1:2772987/134‑1 (MQ=255) gcgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACtca > 2:1254412/1‑134 (MQ=255) cgactcagactcagacagcgactcagactcagaTAGTGACTTTGATTCAGATAGCGACTAAGATTCGTACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcag < 1:2716469/134‑1 (MQ=255) cgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATACAGACTCAGAAACAGACtcaa > 2:1401066/1‑133 (MQ=14) actcagactcagatagcgactcagactcagaTAGTGACTCAGATTCAGATAGTGATTTAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagat < 1:1655400/134‑1 (MQ=255) actcagactcagacagcgactcagactcggtTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagat < 1:1480239/134‑1 (MQ=255) cagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGTCTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattca < 1:943500/134‑1 (MQ=255) cagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGAATCAGATAGCGATTCGGACTCAGATAGCGACacagattca > 1:2496982/1‑134 (MQ=255) cagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGAATCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATATCGACtcagattca > 2:256576/1‑134 (MQ=255) agactcaggcagcgactcagattcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattcag < 2:1940439/134‑1 (MQ=255) aggcagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTg < 2:1527702/131‑1 (MQ=255) agacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCATATTCGGAAAGAGAGTTAAACTCAGATAGCGACTCAGATCAAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGAAAGTg > 2:1035491/1‑134 (MQ=17) gacagcgactgagacacagaTAGTGTGTCATTTTGAGATAGCGTCTCACATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGa < 2:1565991/134‑1 (MQ=17) gacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGa < 1:822094/134‑1 (MQ=255) gacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCCGATAGCGACTCAGATTCAGATAGTGa > 1:241006/1‑134 (MQ=255) acagcgattcatactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGAt < 1:1052681/134‑1 (MQ=255) tagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGAtt < 2:1659694/133‑1 (MQ=255) cagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGAtt < 1:912865/134‑1 (MQ=255) cagcgactcagactcagaTAGTGACTCAGATGCAAATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAAAGAAACAGACACAGATAGAGACTCAGAGTCACATAGTGAtt > 2:626741/1‑134 (MQ=14) cgctactcagactcagaGAGAGACGCAGATTCAGCTAGCCATGCACATGCAGATAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTTATTc < 2:1293939/130‑1 (MQ=14) ctcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGCACTCAGATAGCGACTCAGATTCAGATAGTGATACAGAca > 2:1801837/1‑133 (MQ=255) tcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCACACTc > 1:308335/1‑134 (MQ=255) tcagactcagaTAGTGACTCAGAGTCAGATAGCGAATCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAATGATGCAGACTc > 1:420020/1‑134 (MQ=255) cagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCa < 1:2840129/134‑1 (MQ=255) cagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCa < 1:1728924/134‑1 (MQ=255) tgcagaGAGGGATTCAGATTTCGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATa < 2:2454831/132‑1 (MQ=14) tcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAg < 1:637858/134‑1 (MQ=255) tcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAg < 2:1188434/134‑1 (MQ=255) cagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCACATAGCGACACGCACTCAGATAGCGACCCAGATTCAGATAGCGATTCAGACTCAGATaca > 2:216329/1‑132 (MQ=14) gaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGa > 1:2343371/1‑134 (MQ=255) gaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATACCGATTCGGACTCAGATAGCGACTCAGATTCAGAAAGTGATTCAGACTCAGATAGCGa > 2:476371/1‑134 (MQ=255) agggcttcagattcagatAGCGACTGAGATTCAGACAGCGATTCAGACTCAGAAAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTc < 2:333307/128‑1 (MQ=17) aGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCTGACTCAGATAGCTACTCAGATTAAGATAGTGATTCAGACTCAGATAACAACTc > 1:1943674/1‑134 (MQ=14) aGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCACATTAAGAGAGTTACTCAGACCCAAATAGCGAATc > 2:315120/1‑134 (MQ=14) gTGATTCAGATTAAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCa < 1:2748884/134‑1 (MQ=255) tGACTCTGATTCAAAGAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAg < 1:1791136/134‑1 (MQ=255) gACTCCGATTCAGATAGCGACTCAGATTCTGACAGCGTTTTAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGa < 2:853515/134‑1 (MQ=255) cTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGAACTCAGATAGAGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGAtt > 1:2204934/1‑134 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGAGTCAGATTCAGAc > 1:1603932/1‑134 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGAc > 2:2316715/1‑134 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGAc < 1:2003735/134‑1 (MQ=255) ttcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTGAGACTCAGATAGCGACTCAGATTCAGACa > 2:820515/1‑134 (MQ=255) tcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAg > 2:1849172/1‑134 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCCAATACTGATTCAGACTCAGATAGCGAATCAGACTCAGACAACGa > 2:531039/1‑134 (MQ=14) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGa > 1:548456/1‑134 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGa > 1:34918/1‑134 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGa > 1:2176084/1‑134 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGa > 2:2227329/1‑134 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGAATCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGa > 1:153707/1‑134 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTACGACTCAGCTAGCGACTCAGATACAGATAGTGATTCAGACTCCGCTACCTAGTCAGAGTCAGACAGCGa > 2:732195/1‑134 (MQ=14) aaaGCGATGCAGATTCAGACAGTGTCGCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGATTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAc < 2:2623732/132‑1 (MQ=11) cGACTCAGATTCGGACAGCTATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAg < 1:138890/134‑1 (MQ=255) cGACACAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAg < 1:2643329/134‑1 (MQ=255) tCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTc > 1:2122672/1‑134 (MQ=255) tCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGAATCAGATCCAGATACCGACACAGACCCCGATCCCGACTCAGACTCCGAAAACAACTCAGaccc > 2:673066/1‑131 (MQ=11) tCAGATTCGGACAGCGATTCAGACGCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGAGTCAGATAGCGACTCAGATTCAGACAGCGAGTCaaaatg > 2:2510329/1‑129 (MQ=14) gATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGa > 1:485206/1‑134 (MQ=255) aTTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGAt > 1:1248606/1‑134 (MQ=255) aTTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGAGTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGAAAGCGACTCAGAATCGGAt > 2:789917/1‑134 (MQ=255) tCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAg > 1:2149968/1‑134 (MQ=255) cGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGc > 1:713251/1‑134 (MQ=255) ggACAGCGATTCAGACTAAGATAGCGAATCAGATTCAGATAGCGATTCGGACTGAGATAGCGAATCAGATACAGATAGTGATTAAGAATAAGAAAAAGAATCAGAATCAGAAAGCGAATAAGATTAGGATAGCg > 1:2265355/1‑134 (MQ=14) | CAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCG > USA300TCH1516_ALE/618455‑618721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |