| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 618,636 | G→A | 6.6% | S1246S (TCG→TCA) | sdrD → | Serine‑aspartate repeat‑containing protein D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 618,636 | 0 | G | A | 6.6% | 843.1 / 3.4 | 381 | S1246S (TCG→TCA) | sdrD | Serine‑aspartate repeat‑containing protein D |
| Reads supporting (aligned to +/- strand): ref base G (166/152); new base A (31/12); total (207/174) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.46e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.81e-01 | |||||||||||
Only 100 of 383 total aligned reads displayed.
GCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCAGACTCA > USA300TCH1516_ALE/618503‑618768 | gCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCg < 1:2452450/134‑1 (MQ=255) aCTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGAc < 1:1764984/134‑1 (MQ=255) tctgATTCAGACAGCGACTCAGACTCAGACAGCGGCTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTc < 2:1515714/131‑1 (MQ=255) tCAGATTCAGACAGCGACTCAGATTCAGACAGTGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTc < 1:539772/134‑1 (MQ=255) gATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGa > 1:434306/1‑134 (MQ=255) atgcagaaagcgactcagactcagacagcgactcagactCAGATAGTGATTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATGCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGAt < 1:2394149/131‑1 (MQ=255) aTTCAGGCCGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGAt < 2:1807991/134‑1 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGGCTGTCTATTGCTGATAGCGACTAAGATTCAGATAGCGATTCGGAATCAGATAGCGa > 1:1348891/1‑134 (MQ=17) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa > 1:1003564/1‑134 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa < 1:1854286/134‑1 (MQ=255) gacagcgactcagactcagacagcgactcagactcaGATAGAGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCCGATAGCGACACAGATTCACACAGCGACACCGACTCAGCCAGCGa > 2:1267218/1‑134 (MQ=11) atagcgattcagattcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAAATAGCGAc > 2:1896145/3‑134 (MQ=14) acagcgactcagactcagacagcgactcagactcagATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGAc < 1:2772987/134‑1 (MQ=255) agcgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtc < 1:1743347/134‑1 (MQ=255) agcgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtc < 1:1975288/134‑1 (MQ=255) agcgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtc < 1:2223419/134‑1 (MQ=255) cgactcagactcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGACTCCGAAAGCGATTCAGACTCAGATAGCGAATCAGACTCAGATAGAGAATCAAACTTAGAAAGCGaagcga > 2:116434/1‑129 (MQ=14) actcagactcagatagcgactcagactcagaTAGTGACTCAGATTCAGATAGTGATTTAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagat < 1:1655400/134‑1 (MQ=255) actcagactcagacagcgactcagactcggtTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagat < 1:1480239/134‑1 (MQ=255) tcagactaagacggcgactcagactcagaTAGTGACTTATATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattc < 2:643555/134‑1 (MQ=255) actcagacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACtcagattcagat > 1:1392717/1‑134 (MQ=255) agacagcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGTg > 1:2742867/1‑134 (MQ=255) gacagcgactgagacacagaTAGTGTGTCATTTTGAGATAGCGTCTCACATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGa < 2:1565991/134‑1 (MQ=17) acagcgattcatactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGAt < 1:1052681/134‑1 (MQ=255) cagcgactcagactcagaTAGTGAGTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGAtt < 2:2573010/134‑1 (MQ=255) agcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTc < 2:2353193/134‑1 (MQ=255) agcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTc > 1:950500/1‑134 (MQ=255) agcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGAAAGCGATTCGGAATAAGATAGCGACACAGAATCAGATAGCGAtta > 2:969998/1‑133 (MQ=14) acggactcagactcagaTAGTGAATCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGTGATTc < 2:2520186/131‑1 (MQ=255) gcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCa < 1:2292023/134‑1 (MQ=255) gcgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAACGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCa > 1:877032/1‑134 (MQ=255) cgactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCTGACTCAAATAGCGACTCAGATTCAGACAGTGATTCAg > 2:1536925/1‑134 (MQ=255) cgactcagactcagaTAGCGACTCACATTTAGATAGCGACTCAAAGACATACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAg < 2:318949/134‑1 (MQ=14) gactcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGCTTCAGATAGTGATTCAGa > 1:761101/1‑134 (MQ=255) ctcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACt > 1:1431885/1‑134 (MQ=255) tcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTc > 1:1540856/1‑134 (MQ=255) tcagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCACACTc > 1:308335/1‑134 (MQ=255) cagactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCa < 1:1728924/134‑1 (MQ=255) agactcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGCGTCAGATAGCGAATCAGACTTAGATAGCGACTCAGACTCGGATAGCGACTCAGAATCaa > 2:2736876/1‑133 (MQ=14) gactcggaTAGTGCTTCAGATGAAGATAGCGTCTCAGATTCGGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGa < 2:544614/134‑1 (MQ=14) gttagaTAGTGGCTGAGCGTCATATAGCGATTCAGATTCGAACAAGAATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATa < 2:2479774/131‑1 (MQ=14) tcagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAg < 1:637858/134‑1 (MQ=255) cagaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCACATAGCGACACGCACTCAGATAGCGACCCAGATTCAGATAGCGATTCAGACTCAGATaca > 2:216329/1‑132 (MQ=14) gaTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGa > 1:829230/1‑134 (MQ=255) aTAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGAc < 1:2504693/134‑1 (MQ=255) gTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCa < 1:2187710/134‑1 (MQ=255) tGACTCTGATTCAAAGAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAg < 1:1791136/134‑1 (MQ=255) gACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGAACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGa > 1:2117244/1‑134 (MQ=255) cTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCATATAGCGACTCAGATTCAGATAGTGATTTAAAATCAGATAGCGACTAAGAtt > 1:1158356/1‑134 (MQ=14) cagattcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAAATTCACATAGTTATTCAGACTCCAATACCAAATCAGATTCa > 2:79287/1‑134 (MQ=11) agattcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAg > 2:1452206/1‑134 (MQ=255) agattcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATATCGACTCAGATTCAg > 1:168900/1‑134 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGAGTCAGATTCAGAc > 1:1603932/1‑134 (MQ=255) attcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGAc > 1:391180/1‑134 (MQ=255) tcagatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAg > 2:1849172/1‑134 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCATATAGCGACTCAGATTCAGATAGCGATTCTGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACaacaa > 1:920573/1‑130 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGa > 1:34918/1‑134 (MQ=255) gatAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTACGACTCAGCTAGCGACTCAGATACAGATAGTGATTCAGACTCCGCTACCTAGTCAGAGTCAGACAGCGa > 2:732195/1‑134 (MQ=14) attgCGACTGAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGAc < 2:2690383/131‑1 (MQ=255) tAGCGACTGAGATTCAGACATCGATTCAGACTCAGATAGCGACTAAGATTCAGATAGAGATTCGGATTCAGATAGAGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACt < 1:1185652/134‑1 (MQ=17) cGACACAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAg < 1:2643329/134‑1 (MQ=255) tCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCTGACTCAGATAGCGACTCAGATTCAGATAGTGCTTCAGCATCATAGAGGGACTCAGATTCAGACAGCGACTCAGATTc < 1:555273/134‑1 (MQ=17) tCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGAATCAGATCCAGATACCGACACAGACCCCGATCCCGACTCAGACTCCGAAAACAACTCAGaccc > 2:673066/1‑131 (MQ=11) gATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGa > 1:485206/1‑134 (MQ=255) aTTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATACGGACTCACCTAGCGACTCAGATTGAAATAGTAATGAACCATCAGATAGCGAATCAGCTTCAGAAAAAGAATCAGAtaaaaaa > 2:393652/1‑128 (MQ=9) tCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAg > 1:2149968/1‑134 (MQ=255) cGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGc > 1:713251/1‑134 (MQ=255) cGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGc < 1:1227677/134‑1 (MQ=255) gACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGAt < 1:204804/57‑1 (MQ=40) tcattaaTTCTGACGCAGACAGCGACTCATACTCAGATAGTGATTCGGACTCAGATAGCGACTCAGATTCTGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGAc < 2:1757142/128‑1 (MQ=17) gCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATACAGATCGTGATTCAGACTCAGATAGCGACTAAGATTCAGACCGCGACTCATATTCGGAAACCGACTCa > 2:843619/1‑134 (MQ=17) cGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAg > 1:2822813/1‑134 (MQ=255) gATTCAGACTCAGAGTCCGACTTAGATTCAGATTGCTATTCCGATTCAGATAGCGACTCAGATTCAGATAGGGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGa < 2:2847021/134‑1 (MQ=14) acAGACTCAGATAGCGACTTAGATTCAGATAGCGATTCTGTCTCAGATAGTGACTTTGATTCAGATAGTGATGTGGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTc < 1:201173/133‑1 (MQ=14) cAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCa < 1:2066496/134‑1 (MQ=255) cAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCa < 1:2551224/134‑1 (MQ=255) gACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGATTTAGATAGCGACTCAGATTCAGAAAGCGACTCAGATTCGGAAAGAGGATAAGATTCata > 2:585100/1‑132 (MQ=14) gACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGa > 1:2515845/1‑134 (MQ=255) aGATCGCGGCTCAGATTCAGATAGCGATTAGGACTCTGATAGTGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGCCTCAGATTCGGATAGCGACTCAGATTCAGACAGCg < 2:1112163/134‑1 (MQ=14) gATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGTGACTCAGATTCAGATAGTGATTCAGACTCAGAGAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGa < 1:999224/134‑1 (MQ=255) tAGCGACTCAGATTCAGATAGCAATTCAGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACACAGATTCAGATAGCGACTCAGACTCAGACAGCGACt > 2:1197900/1‑134 (MQ=11) aGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCGGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTc < 1:1104811/134‑1 (MQ=255) gCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGCTGGCGACTCTGAGCCTGACATCGACGCCCACTCCTACAGCGACTCAGATTCCGCCAGCgcgtca > 2:1022449/1‑129 (MQ=9) cGACTCAGATTCAGATAGCGATTCGGACTCAGATATCGACTCAGATTCAGATACTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAg > 1:1710291/1‑134 (MQ=255) gACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCAACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGa > 1:2006066/1‑134 (MQ=255) tcagattcagatAGCGATTCGGACTCAGATAGCGATTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTc < 1:2598123/134‑1 (MQ=255) tcagattcagatAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTc < 1:1914031/134‑1 (MQ=255) tcagattcagatAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGACTCAGAcac > 2:2291194/1‑132 (MQ=255) tcagattcagatAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGATACGGATAGCGAATCAGATTCAGACAACGAACCAGAccc > 2:1983508/1‑132 (MQ=17) tcagattcagatAGCGATTCCGACTCAGATAGCGACTCAGATGCAGATAGTGATTCAGAATCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGAATAGAGACACAGATTCAGACAGCGACTCAGACTc > 2:2412259/1‑134 (MQ=17) gattctgatGGCGATTTGGATTCAGATTGCGACTTAGATTCAGATAGTGATTCAGACTCAGATAGCGACTGAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGa < 2:491889/134‑1 (MQ=18) gattcagatAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGCTAGCGACTCAGACTCAGACAGCGACTCAGACTCGGa > 2:1700742/1‑134 (MQ=255) gattcagatAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGa < 1:1316664/134‑1 (MQ=255) gattcagatAGAGATACAGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGa < 2:1318035/134‑1 (MQ=255) gatAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGa > 2:1645905/1‑134 (MQ=255) atAGCGATTTGTGATCAGATAGCGACTCAGATTCAGATAGTGATTTAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGAt < 1:818234/134‑1 (MQ=18) gCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCa > 1:2342156/1‑134 (MQ=255) cGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCCGATAGTGATCCAg > 2:1356779/1‑134 (MQ=255) cGATTCGAACTCAGTTTGGTACTCACATTCAGATTGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCAg < 1:519232/134‑1 (MQ=18) cGGACTCAGATAGCGACTCATATTCAGATTGTGCTTGACCTACAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCAGACTCa < 1:2705481/134‑1 (MQ=18) | GCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCAGACTCA > USA300TCH1516_ALE/618503‑618768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |