Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,435,071 C→T 11.8% T143I (ACT→ATT)  dapH → 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,435,0710CT11.8% 444.7 / 13.1 203T143I (ACT→ATT) dapH2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase
Reads supporting (aligned to +/- strand):  ref base C (80/91);  new base T (24/5);  total (104/99)
Fisher's exact test for biased strand distribution p-value = 4.56e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 205 total aligned reads displayed.

CGTTTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTT  >  USA300TCH1516_ALE/1434939‑1435204
                                                                                                                                    |                                                                                                                                     
 gTTTATTAAAGAACAAGTAATGATTGAAGTTGGTGGTGTCGTTATGGTGGGGGCAAAAGTTAATATGGGCGTAGTGGTTGGGGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTg                                                                                                                                     <  2:1367921/134‑1 (MQ=255)
  tttATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATACTACTCTCGGTGGTCGCGGTATAACtaa                                                                                                                                    >  2:2190969/1‑132 (MQ=255)
   ttattaGAGAGCAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGt                                                                                                                                   <  1:751529/134‑1 (MQ=255)
     attaGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGACGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTaa                                                                                                                                 >  1:722111/1‑134 (MQ=255)
       taGATAACAAGCCATTATTGAAGATGGTGTTGTCTTTATGATGTGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTaaaa                                                                                                                               <  1:974739/134‑1 (MQ=255)
            aaCAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTa                                                                                                                          >  1:1641190/1‑134 (MQ=255)
              cAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCCTACAATTCAAAAAAATATACa                                                                                                                        >  2:2658062/1‑134 (MQ=255)
               aaGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTGTAGGTAGTCGTGCTACAACTGGTAAAAATGTACAt                                                                                                                       >  1:1952298/1‑134 (MQ=255)
               aaGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTCCTACAACTAATAAAAATGTACAt                                                                                                                       >  2:2015004/1‑134 (MQ=255)
               aaGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTAGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACAt                                                                                                                       >  1:110315/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGGTATAACTGGTAAAAATGTatctttt                                                                                                                    >  2:1710565/1‑128 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGGTACAATTAATAAAAATGTACAAGTa                                                                                                                    >  2:2692783/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAACAATGTACATGTa                                                                                                                    >  1:2537883/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                    >  1:612483/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                    >  1:1783087/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTa                                                                                                                    >  1:1527636/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTCGTACCACTAATAAAAATATACATGTa                                                                                                                    >  2:1344741/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTAAAACTAGAAAAAATATACATGTa                                                                                                                    >  2:576014/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACACTCGGTGGTTGTGCTACAACTGATAAAAATGTACATGTa                                                                                                                    >  1:1804619/1‑134 (MQ=255)
                  ccATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTAGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCGCTACAATTAATAAAAATATATATTTa                                                                                                                    >  2:2864803/1‑134 (MQ=255)
                   cATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACACTTAATATTGGCGCAGTCGTTGACGAAGGTACAATGATAGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAg                                                                                                                   >  1:1022504/1‑134 (MQ=255)
                     ttattGAAGATTGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTTGTTGGCGAAGGTATAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAggg                                                                                                                 <  1:2198038/134‑1 (MQ=255)
                     ttattGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAggg                                                                                                                 >  1:2174020/1‑134 (MQ=255)
                       attGAAGATGGTGCTGTCGTTATGATGGGCGCAATAATTAATATTGGCGCAGTCGTTGGAGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGc                                                                                                               <  1:2579172/134‑1 (MQ=255)
                       attGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGc                                                                                                               <  1:1864281/134‑1 (MQ=255)
                        ttGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCt                                                                                                              >  1:321966/1‑134 (MQ=255)
                         tGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTg                                                                                                             >  2:1575219/1‑134 (MQ=255)
                          gAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTCCAATGATTGATATGAATGCTACTCTCGGTGGTCCCCCTACCATTAGTACAAATCTAACTGTAGCGGCTgg                                                                                                            >  2:778080/1‑134 (MQ=255)
                             gATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGgcgc                                                                                                         >  1:2469106/1‑134 (MQ=255)
                             gATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGATGATCGTGCTAAAACATGGAAAAATGTACATGTAGGGGCTTgcgc                                                                                                         >  1:784844/1‑134 (MQ=255)
                             gATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGACAAAGGAAAAAAGATTAATAAGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGgcgc                                                                                                         >  1:286396/1‑134 (MQ=255)
                               tGGTGCTGTCGTTATTATTGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAg                                                                                                       <  1:2694718/134‑1 (MQ=255)
                                  tGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCGACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTAt                                                                                                    <  1:1273416/134‑1 (MQ=255)
                                      gTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGc                                                                                                >  1:1296958/1‑134 (MQ=255)
                                           tATGATGGGCGCAACAATTAATATTGGCGCAGTGGTTGGCGAAGGTACAATGATTGATATGCCTGTTCATTGCAAATGTCGTGCTCCCCCTGATAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGgtg                                                                                           <  1:2113465/134‑1 (MQ=255)
                                            atgatgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTCCTACCACTGGTAAAAATGTACATATCGGGGCTGACCCAGTCTTAGCAAgtgt                                                                                          >  2:495377/1‑134 (MQ=255)
                                             tgatgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCATTAAAAAAAAAACACATGAAGGGCCTGGCGCAGTATTAGCAGGtgtg                                                                                         >  2:737517/1‑134 (MQ=255)
                                              gatgGGCGCAACAATTAATATTGGTGCAGTCTTTTGCGAAGGTACAATGATTGATATGAATGCTACTCGCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGa                                                                                        <  1:688353/134‑1 (MQ=255)
                                               atgGTCGCAACAATTAATATTGGCGCAGTCGTTGTCGAAGGTACAATGATTGTTATGAATGCTTCTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  1:2274787/134‑1 (MQ=255)
                                               atgGGCGCAACAATTAATATTGGCGCAGTTGTTAGCGAAGGTATAATGATTGATATGAATGTTACTGTCGGTGGTCGTGTTACAACTGGTAAAGATGTACATGTAGTGGCTGGAGCAGTATTAGCAGGTGTGAt                                                                                       <  2:1075584/134‑1 (MQ=255)
                                               atgGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  1:1977785/134‑1 (MQ=255)
                                               atgGGCGCAACAAGTGAGATTGGCGCAGTCGTCGGCGAAGGTACAATGATTGATATGACTGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  2:1775108/134‑1 (MQ=255)
                                               aagggCGGAACAATTAATGTTGGCGCAGGCGTTGGCGAAGGTACAATGATTGATATGAAGGCTACTCTCGGTGGTCGTGCTACAACTTGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAt                                                                                       <  1:1325865/132‑1 (MQ=255)
                                                tttgcgcAACAATTAATATTGGCGCAGTTGTTGGAACAGTAACAATGATGGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGAtt                                                                                      <  1:532919/131‑1 (MQ=255)
                                                     gcAATAATTAGTAATGGGTCTGTATTTGTCGAAGGTACAATGATTGATATGAATGATACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCCGTATTAGCAGGTGTGATTGAAcc                                                                                 <  2:2292996/134‑1 (MQ=255)
                                                          aaTTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGGTATCACTAAAAAAAAAAAACATGTAAAGGCAGGCACAGCATTAGCCAGTAAGATTGAAaccccaa                                                                            >  2:2485415/1‑132 (MQ=255)
                                                           aTTAATTTTTGTGCATTCGTTGGTGAATGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAg                                                                           <  1:1991383/134‑1 (MQ=255)
                                                            ttAATATTGGCGCAGTCGTTGGCGAAGGTACAATGGTTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGt                                                                          >  1:805811/1‑134 (MQ=255)
                                                              aataatGGCGCATTCGTTGGAGAAATGACAACAATTGATATGAATGCTACTCTCGGTGGTCGTCGTATCACTAAAAAAAAAAAACATGTAGGGGCAGGCGCAGTATTAGCAGGTGTGATTGAACGCCCTATTGc                                                                        >  2:1320591/1‑134 (MQ=255)
                                                              aaTATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTATATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGc                                                                        <  1:116145/134‑1 (MQ=255)
                                                               atatTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGTATTCTACTCTCTGTTGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCt                                                                       <  1:236823/134‑1 (MQ=255)
                                                                tatTGGCTCAGTCGTTGGCGAATTTACAATGATTGATATTAATGCTTCTCTCGGTTGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCtt                                                                      <  1:599293/134‑1 (MQ=255)
                                                                tatTGGCGCATTTGTTGACGAAGGTACAATGATTGATATGATTGCTTCTTTTTGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCtt                                                                      <  1:479345/134‑1 (MQ=255)
                                                                   tGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCAc                                                                   <  2:1102876/134‑1 (MQ=255)
                                                                   gcgctcAGTCGTTGGCGAAGGTACAATGATTAATATGAAGTCTTCTCTCGGTGGTCGTGCTATAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCAc                                                                   <  1:1715056/129‑1 (MQ=255)
                                                                    ggCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCAcc                                                                  >  1:1740718/1‑134 (MQ=255)
                                                                    ggCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTAAATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCAcc                                                                  >  1:244009/1‑134 (MQ=255)
                                                                    gacgcAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACCATTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCAcc                                                                  >  2:2825105/3‑134 (MQ=255)
                                                                    agagtaGTCGTAGGTGAAAGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCAcc                                                                  <  2:1700872/129‑1 (MQ=255)
                                                                      cgcAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCgg                                                                >  1:2784858/1‑134 (MQ=255)
                                                                       gcAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTTCTACTTGTTAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGt                                                               <  1:138850/134‑1 (MQ=255)
                                                                          gTCGTTGGCGAAGGTACAATTATTGATATGAATGCTACTCTCGGTGGTCGTGTTATAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTtat                                                            <  1:2643498/134‑1 (MQ=255)
                                                                           tCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACTTGTTGGGTTCGCCACAAAAATAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTtata                                                           >  1:662375/1‑134 (MQ=255)
                                                                             gTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAGTACATGTAGGGGCTGGCGCAGTATTAGCAAGTGTGATTGAACCCACTCGTGCTTCACCGGTtatact                                                         >  2:1694792/1‑132 (MQ=255)
                                                                             gTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCATTAAAAAAAAAATACATGTAGGGGCTGGCACAATATTAGAAGGAGAGATTGAACCCCCTAGTGCTTCACCGGTTATAAt                                                         >  2:1155330/1‑134 (MQ=255)
                                                                              ttGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATc                                                        <  1:1366639/134‑1 (MQ=255)
                                                                              ttGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTACCACTGAAAAAAATGCACATGTAGGGGCTGGCGCAGTATTAGCAGGAGTGATTGAACCCCCTAGTGCTTCACCGGTTATACTc                                                        >  2:254979/1‑134 (MQ=255)
                                                                              atagagAAAGTACAAAGAGTGATAAGAATGCAACCCGCGGTGGTCGTGCTACAACTGGTAAAAATGGACATGGAGGCGCTGGCGCAGTATTAGCAGGTGTGATTGAATCCCCTAGTGCTTCACCGGTTATAATc                                                        <  2:1247613/129‑1 (MQ=255)
                                                                               tGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTTGTCGTGATAACTTTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCg                                                       <  1:944909/134‑1 (MQ=255)
                                                                               tGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGTTAAAAATGTACATGTAGGGGCTGGAGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCg                                                       <  1:2250492/134‑1 (MQ=255)
                                                                                 gCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAg                                                     <  1:1575219/134‑1 (MQ=255)
                                                                                  cGAAGGTACAATGTTTGATATGAATGCTTTTCTTGGTGGTCGTGCTAAAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAgg                                                    <  1:313558/134‑1 (MQ=255)
                                                                                  cGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAATTAATGCAGGTGCTCGCGCAGTATTAGCAGGTGTGATTGAACCCCCTATTCCTTCACCGGTTATACTCGAgg                                                    >  2:878203/1‑134 (MQ=255)
                                                                                    aaGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATAACTAAAAAAAAAGTACATGTAGGGACTGGCGCAGTATTAGCAGGAGTGATTGAACCCCCTAGTGCTTCACCGGTGAAAATCGAggcg                                                  >  2:1490243/1‑132 (MQ=255)
                                                                                      ggTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGATGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGgatga                                                >  1:1409366/1‑134 (MQ=255)
                                                                                        tACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAATTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAAACCCGTAGTGCTTCACCGGTTATAATCGAGGatgatg                                              <  1:2118159/134‑1 (MQ=255)
                                                                                           aaTGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTAt                                           <  2:2265710/134‑1 (MQ=255)
                                                                                            aTGATTGATATGAATGCTACTCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAATATATGAGATAGCGCAATATTAGAAGGTATAATTGAACACAATAGTAATTAATCGAATATAATCGAGGATGatatata                                          >  2:1639896/1‑133 (MQ=255)
                                                                                              gattgatATGAATGCTACTCTCGGTGGTCGTGGTATCATTAATAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTAACCGGTTATAATAGGAGATGATGTATTaa                                        >  2:452163/1‑134 (MQ=255)
                                                                                                  gatATGAATTCTACTCTCGGTGGTCGTGCTACAACTTGTAAAAATGTATTTGTTGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCgg                                    <  1:2710514/134‑1 (MQ=255)
                                                                                                  aatatGAATGCTAGTCTCGGTGGTCGTGCTAGAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCgg                                    <  2:2174020/133‑1 (MQ=255)
                                                                                                    tatGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTg                                  >  1:390257/1‑134 (MQ=255)
                                                                                                      tGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTCTTAATCGGTGCa                                >  1:1603882/1‑134 (MQ=255)
                                                                                                      tGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCACTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCa                                >  1:231871/1‑134 (MQ=255)
                                                                                                      tGAATGCTACTCTCGGTGGTCGCGGTATAATTAAAAAAAAAATACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAACCGATgaa                                >  2:934699/1‑132 (MQ=255)
                                                                                                       gAATGCTACTCTCGGTGGTCGCCGTATAATTGAAAAAAATATACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATAGAGGATGAAGTATTAATCGGTGCaa                               >  2:2744996/1‑134 (MQ=255)
                                                                                                           gCTACTCTCGGTGGTCGTCGTATCATTAAAAAAAAAATACATGTAGGGGCTGGAGCAGTATTAGAAGGTGAGATTGAACCACCTAGAGCTTAACCGGATATAACAGAGGAGAATGTATTAATCGATCCAAACGc                           >  2:2363824/1‑134 (MQ=255)
                                                                                                             tACTCTCGGTGGTCGTGCTACAACTTGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAg                         <  1:721594/134‑1 (MQ=255)
                                                                                                              aCTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGTTATGATTGAAACCAATAGTGATTCACCGGATATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGt                        >  1:837321/1‑134 (MQ=255)
                                                                                                               ctctCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGAAAATGCAGtt                       >  1:208074/1‑134 (MQ=255)
                                                                                                                tctcGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTa                      <  1:1557875/134‑1 (MQ=255)
                                                                                                                actcGGGGGGCGTGCTACAAGTGGTAAAAATGGACTGGTAGGGGGTGGCGCAGTATTAGCAGGTGTGATTGAACTCCCTAGTGCTTCACGGGTTATAATCGAGGATGATGTATTAATCGGTGCGAATGCAGTTa                      <  2:62346/133‑1 (MQ=255)
                                                                                                                  tcGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGTGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTAtt                    <  1:2305089/134‑1 (MQ=255)
                                                                                                                    ggtggtCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATAGGTGCAAATGCAGTTAtttt                  >  1:76252/1‑134 (MQ=255)
                                                                                                                      tggtCGTGCTACAACTGGTAAAAATATAGCTCTGTGTGCTGGCTTAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAg                <  1:1220957/134‑1 (MQ=255)
                                                                                                                      tagtCGTGATACAACTCGTATAAATGTATATTTAATGGCTGGCTTAGTATTAGCAGGTGTGATTGATCCCCCTAGTGCTTCACCGGTTATAATCGAGTATGATGTATTAATCTGTTCTTATGCAGTTATTTTac                <  2:1928745/132‑2 (MQ=255)
                                                                                                                      aggtAGTGCTACAACTGGTGATACTTCACATGTGTGGTCTGGTGTAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGTTGTATTAATCGGTGCAAATGCAGTTATTTTAg                <  2:1397838/133‑1 (MQ=255)
                                                                                                                           gTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGgt           >  1:1879889/1‑134 (MQ=255)
                                                                                                                              cTACAACTGGTAAAAATGTTTTTGTAGGGGTTGGTGTAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACAGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTa        <  1:1500895/134‑1 (MQ=255)
                                                                                                                                  aaCTGGTAAAAATGTACGTGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACgtg    <  2:1430724/134‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                     
CGTTTATTAGAGAACAAGCCATTATTGAAGATGGTGCTGTCGTTATGATGGGCGCAACAATTAATATTGGCGCAGTCGTTGGCGAAGGTACAATGATTGATATGAATGCTACTCTCGGTGGTCGTGCTACAACTGGTAAAAATGTACATGTAGGGGCTGGCGCAGTATTAGCAGGTGTGATTGAACCCCCTAGTGCTTCACCGGTTATAATCGAGGATGATGTATTAATCGGTGCAAATGCAGTTATTTTAGAAGGTGTACGTGTT  >  USA300TCH1516_ALE/1434939‑1435204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: