New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	2247 =	75 (0.930)	5 (0.010)	4/264	9.9	1.2%	intergenic (+27/+141)	USA300HOU_pUSA300HOUMR0003/USA300HOU_pUSA300HOUMR0004	hypothetical protein/hypothetical protein
	?	NC_012417	2073 =	719 (0.890)					intergenic (+306/+20)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAATTAGATAAACAAGTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAA  >  CP000731/2107‑2387                                                                                                                                             |                                                                                                                                             cAATTAGATAAACAGGATAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATTCCGAAAAAAt                                                                                                                                              >  2:186644/1‑141 (MQ=255)    ttAGATAAACAAGTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTa                                                                                                                                           >  1:53832/1‑141 (MQ=255)         tAAACAAGTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGAt                                                                                                                                      <  1:95231/141‑1 (MQ=255)           aaCAAGTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGt                                                                                                                                    <  1:5393/141‑1 (MQ=255)           aaCAAGTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGt                                                                                                                                    >  2:142565/1‑141 (MQ=255)            aCAAGTTAATATGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATAACGCGTGATATATTTTATGTTTCATGTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGtt                                                                                                                                   <  2:215610/141‑1 (MQ=255)              aaGTTAATAGGTTTTTAAAGAATGATATTTATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTga                                                                                                                                 <  2:142692/141‑1 (MQ=255)               aGTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTgag                                                                                                                                >  2:34559/1‑141 (MQ=255)               aGTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTgag                                                                                                                                >  1:218970/1‑141 (MQ=255)                gTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTgaga                                                                                                                               <  1:258587/141‑1 (MQ=255)                gTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTgaga                                                                                                                               >  1:124067/1‑141 (MQ=255)                  tAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGagaag                                                                                                                             <  2:124770/141‑1 (MQ=255)                   aaTAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGTACATCGTATTTATGCCGACAAAATTTATTGATGTTGagaaga                                                                                                                            >  2:118706/1‑141 (MQ=255)                   aaTAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGagaaga                                                                                                                            >  1:237814/1‑141 (MQ=255)                   aaTAGGATTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTGGagaaga                                                                                                                            >  1:1072/1‑141 (MQ=255)                    aTAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACATAGTAAGTTGTAATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAgaagaa                                                                                                                           >  1:130489/1‑141 (MQ=255)                    aTAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAgaagaa                                                                                                                           >  1:122404/1‑141 (MQ=255)                    aTAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAgaagaa                                                                                                                           >  1:264882/1‑141 (MQ=255)                     tAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAAc                                                                                                                          >  1:53808/1‑141 (MQ=255)                       ggTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAAccc                                                                                                                        >  1:213235/1‑141 (MQ=255)                        gTTTTTAAAGAATGATATTTATGTATTAGAAATTCAAATACAAAGTAATTGGTTAGATTTTTTAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCt                                                                                                                       <  2:122540/141‑1 (MQ=39)                         tgtttAAAGAATGATATTCATGTATTAGAAATTCAACTACACCGCAATTTGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCtt                                                                                                                      <  1:9892/139‑1 (MQ=255)                             tAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGATGAACCCTTAACt                                                                                                                  >  2:50380/1‑141 (MQ=255)                              aaaGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTa                                                                                                                 >  2:80375/1‑141 (MQ=255)                                aGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGTACAAATTTATTGATGTTGATAAGAACCCTTAACTaaa                                                                                                               >  2:27861/1‑141 (MQ=255)                                aGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaa                                                                                                               >  1:231368/1‑141 (MQ=255)                                 gAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATTCCGAAAAAATTTATTGATTTTGAGAAGAACACTTAACTAAAc                                                                                                              >  2:285800/1‑141 (MQ=255)                                 gAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTaaaa                                                                                                              >  2:285801/1‑140 (MQ=255)                                 gAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAAc                                                                                                              >  1:293248/1‑141 (MQ=255)                                 gAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAAc                                                                                                              >  2:118100/1‑141 (MQ=255)                                     gATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGc                                                                                                          >  2:273081/1‑141 (MQ=255)                                        atTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTCTTATGAGGACAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGa                                                                                                       <  2:86496/141‑1 (MQ=255)                                         atCATGTATTAGAGATTCAAATACAAGGTAATTTGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGAc                                                                                                      <  2:12016/140‑1 (MQ=255)                                                     aaaTTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                          <  1:130000/141‑1 (MQ=255)                                                     aaaTTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCAt                                                                                          <  1:242461/141‑1 (MQ=255)                                                        ttCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGCCGCATGTCGGccggtc                                                                                       >  1:111915/1‑136 (MQ=255)                                                          cAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGTATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACACTTAACTAAACTTGCAGTCGAATGTCGTCATAGcct                                                                                     >  2:4203/1‑139 (MQ=255)                                                            aaTACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGTATAAATAAGGAACATCGTATTTCTGCCTAAAAAATTTATTTATTTTCAGAAGAACCCTTAACTATACTTCCAGAACAATTCCGGCATCTCGTGa                                                                                   >  2:297004/1‑141 (MQ=255)                                                                 acaGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                              >  1:127141/1‑141 (MQ=255)                                                                 acaGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                              >  1:132184/1‑141 (MQ=255)                                                                 acaGTAATTAGTTATAGATTTCAGCTATTGTTTTGTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                              <  2:288514/141‑1 (MQ=255)                                                                      aaTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTGACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                         >  1:254226/1‑141 (MQ=255)                                                                      aaTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                         >  1:281713/1‑141 (MQ=255)                                                                      aaTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                         >  2:188912/1‑141 (MQ=255)                                                                      aaTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                         >  1:162760/1‑141 (MQ=255)                                                                      aaTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                         >  2:154453/1‑141 (MQ=255)                                                                      aaTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCCTCAGCTATTatac                                                                         >  2:119405/1‑138 (MQ=255)                                                                      aaTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTACGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGc                                                                         >  1:16704/1‑141 (MQ=255)                                                                       aTTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGTAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCACAGCGTTAGCTCTTACGcc                                                                        >  2:291413/1‑141 (MQ=21)                                                                         tGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAACGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                                                      <  1:289013/141‑1 (MQ=255)                                                                         tGGTTATATATTTCAGCTATTGTTTTACATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGa                                                                      <  2:147218/141‑1 (MQ=255)                                                                           gTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                    <  2:179989/141‑1 (MQ=255)                                                                            ttATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACTCTTAACTAAACTTGCAGACGAATGTCTGCATAGCGTGAGCTATTAACCCAACCa                                                                   >  2:120333/1‑141 (MQ=255)                                                                                 tatTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                              <  1:230866/141‑1 (MQ=255)                                                                                     tCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAg                                                          >  1:170351/1‑141 (MQ=255)                                                                                     tCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAg                                                          >  1:275601/1‑141 (MQ=255)                                                                                     tCAGCGATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAg                                                          <  1:126591/141‑1 (MQ=255)                                                                                         cTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAACCTAGAAGGCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGtttt                                                      <  1:11414/141‑1 (MQ=255)                                                                                             tGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATTTCGAAAAACGTTGTGGAGGTTGAGAAGAACCCTTAAATAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                                  <  2:182319/141‑1 (MQ=17)                                                                                             tGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGa                                                  <  2:57251/141‑1 (MQ=255)                                                                                                 ttttATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                              >  1:195902/1‑141 (MQ=255)                                                                                                   ttATGAGGATAAATAAGGCACATCGTATTTATTCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCTTCAAGTTTTGGGATTGTTa                                            >  2:153255/1‑141 (MQ=255)                                                                                                      tGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGATTTGGGATTGTTAAgg                                         >  2:11871/1‑141 (MQ=255)                                                                                                         ggATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGtt                                      >  1:96442/1‑141 (MQ=255)                                                                                                            aaaataaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCg                                   <  1:281374/140‑1 (MQ=255)                                                                                                              aataaGGAACATCGTATTTATGCCGGATAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                 <  2:121374/141‑1 (MQ=255)                                                                                                               ataaGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGATTGGCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                >  1:143221/1‑141 (MQ=255)                                                                                                                 aaGGAACATAGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCt                              <  2:41382/141‑1 (MQ=37)                                                                                                                  aGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTc                             <  1:13450/141‑1 (MQ=38)                                                                                                                       cATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                        >  1:24968/1‑141 (MQ=34)                                                                                                                         tCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCa                      >  1:175409/1‑141 (MQ=32)                                                                                                                          cGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCAGCTGAGCGTGAAATCTTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTAAACGTCaa                     >  2:228196/1‑141 (MQ=11)                                                                                                                           gTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt                    <  1:246930/141‑1 (MQ=31)                                                                                                                           gTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt                    >  1:295316/1‑141 (MQ=31)                                                                                                                           gTATTGATGCCGAAAAGATTTATTGATGTTGAGAAGAACCCTTAACTAAACGTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt                    <  2:143988/141‑1 (MQ=9)                                                                                                                                             tttATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATaaaa  <  1:134607/141‑1 (MQ=33)                                                                                                                                             |                                                                                                                                             CAATTAGATAAACAAGTTAATAGGTTTTTAAAGAATGATATTCATGTATTAGAAATTCAAATACACAGTAATTGGTTATATATTTCAGCTATTGTTTTTTATGAGGATAAATAAGGAACATCGTATTTATGCCGAAAAAATTTATTGATGTTGAGAAGAACCCTTAACTAAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAACAATTGGAATAAAA  >  CP000731/2107‑2387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.