| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2085296 = | 37 (0.910) | 6 (0.170) | 5/232 | NT | 17.4% | coding (173/201 nt) | hlb_1 | Phospholipase C |
| ? | USA300TCH1516_ALE | = 2128343 | 24 (0.660) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
GTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTA > USA300TCH1516_ALE/2085163‑2085435 | cgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtaaaaaatttagagacagaaaaaaaactccaaacccaataaatactgttgttacaaggtttctaTGTATCCa < 1:214668‑M1/8‑1 (MQ=255) ttattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAAc > 1:103339‑M1/131‑141 (MQ=255) tattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt > 1:400276‑M1/130‑141 (MQ=255) catcacTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACt < 1:86481/138‑1 (MQ=255) ttctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCTACCTgg < 1:375703‑M1/14‑1 (MQ=255) ttctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTgg < 1:88837‑M1/14‑1 (MQ=255) cacgagCATTAGCAAATTTATTATTAGTTGTGGCACTGACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGCCCGTTTTGTATCCAAACTGga < 2:62257/136‑1 (MQ=255) cacTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCAAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGga < 2:337751/141‑1 (MQ=255) ctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGgag > 1:374982‑M1/126‑141 (MQ=255) aTTAGCAAATTTATTATTAGTTGTTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACtttt < 1:392126/141‑1 (MQ=255) tattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGACGATAGCGAAGCTAAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTCAACATAAAATTACt > 1:116181/1‑141 (MQ=255) taGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAt > 2:483706/1‑141 (MQ=255) atgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacacgccacacacgaagattacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc < 1:364484‑M1/40‑1 (MQ=255) atgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggaaccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc > 2:157816‑M1/102‑141 (MQ=255) gCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAATATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaa < 2:469873/141‑1 (MQ=255) cTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaaaa > 2:433399/1‑140 (MQ=255) ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt < 1:178853/141‑1 (MQ=255) tACTGACAATAGTGGCAAAGCGGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTa < 2:253164/141‑1 (MQ=255) cTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATAATTCAAAAAGTaaa > 2:148145/1‑141 (MQ=255) cTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTCTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAATaaa > 2:150979/1‑141 (MQ=255) gtcAATAGGGGAAAAGGCGAATTTGAGGAAGATGAGACTGATTTGAAGTTAGTTAGTCATAACGTTTAGATGTTATCGACCGTTTTGTAGCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAAc < 2:410693/139‑1 (MQ=255) ccactaaaattttataaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAg > 2:341117‑M1/84‑141 (MQ=255) tAGTGCCAAAGCCGAATCTAAGAAAGATGACACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat < 1:285221/141‑1 (MQ=255) gTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataa > 1:292215/1‑141 (MQ=255) tgacAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataat < 2:96981/138‑1 (MQ=255) gCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataata > 2:250804/1‑141 (MQ=255) gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg > 1:62117/1‑141 (MQ=255) gCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg < 1:25861/141‑1 (MQ=255) ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt < 2:209743/141‑1 (MQ=255) gAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGttt < 1:447450/141‑1 (MQ=255) aaaTCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACGTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGttt < 1:446059/140‑1 (MQ=255) tgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTAACCAAACTGGAGACTTTTAACATAAAATTAAAAATAAAAAAAAAAGTAAAACAGCATAATATCAAGGTTTATAAc > 2:138937‑M1/63‑141 (MQ=255) atttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta < 1:316332‑M1/83‑1 (MQ=255) atttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta < 1:418154‑M1/83‑1 (MQ=255) aagaTGATACTTATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttat < 2:469810/141‑1 (MQ=255) tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCTTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatt < 1:183064/141‑1 (MQ=255) tgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAACTTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATCACTttatcatt > 2:7728/1‑141 (MQ=255) tttGAAGATAGTTATCTATAGCTTTGATATGTGATCGCCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat < 1:158027/141‑1 (MQ=255) agttagttAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAGCTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTc > 1:354804/1‑141 (MQ=255) agttagttAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCACAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATCCCTc > 2:333050/1‑141 (MQ=255) agttagttAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTc > 2:360162/1‑141 (MQ=255) agttagttAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTc > 1:298134/1‑141 (MQ=255) taagcATAACGTATATATGTTATCAAAAGTTCTGTATCCAAACTGGAGAGTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaa < 2:325715/137‑1 (MQ=255) ttATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttag > 1:390625/1‑141 (MQ=255) atatGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTCAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggg < 2:116181/141‑1 (MQ=255) atatGTTATAGACGGTTTTGTAGGCAAACTGGAGACGTTTAGGATAAAATTACTTATCATTCGAAAAGTAAAACAGCATGATATCAAGGTTTATAACGTTTTGATTATCAATAATACCTCATATAAAATAAAAttttaggg < 2:458480/141‑1 (MQ=255) cGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaa > 2:484024/1‑140 (MQ=255) gACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCCAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAAGAAAAttttagggactttttagg < 2:275627/141‑1 (MQ=255) ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga < 1:438006/141‑1 (MQ=255) ttGTATCCAAACTGGAGACTTTTAACATAAAATTTCTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGAGACTTTTTAGGGACttta > 1:318668/1‑141 (MQ=255) aTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTTTAAGTTAATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGCCTTATTAGGGACttta < 2:431604‑M1/140‑1 (MQ=255) | GTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTA > USA300TCH1516_ALE/2085163‑2085435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |