| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | 100% | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 41 (0.780) +TCTCCAGGCACTTGTGCATATTCTGAAA |
37/204 | NT | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
ACACTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAATTACACC > CP000731/6413‑6691 | ttttattctatattttgctagttgaaaaattgatgatgctgccgtaaaaccggctgtgccatataccatagactctttaatacacatttcttggcgaataggaacaatccactctccaggcacttgtgcatattctgaaaa < 2:5078‑M2/1‑1 (MQ=255)attcattccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaa < 1:170791‑M2/1‑1 (MQ=255) tcattccatatttttctatttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATc < 1:19457‑M2/3‑1 (MQ=255) tccatattttgctagttaaaaaaatgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCAcc < 2:1348‑M2/7‑1 (MQ=255) tttttgtatgtcaaaaattgataatgcggccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTAtg < 2:87032‑M2/13‑1 (MQ=255) tttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTgtagg > 1:223376‑M2/129‑139 (MQ=255) caaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcccttgtgcatatccgtgtaATCCACCTGTATGTGTCACGCCaa < 1:214194‑M2/24‑1 (MQ=255) aattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatc > 1:151786‑M2/114‑141 (MQ=255) ttgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatcat > 2:130980‑M2/112‑141 (MQ=255) atgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatcat < 1:192784‑M2/30‑1 (MQ=255) ctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaatagtaacaatccactctccggtcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTaa < 2:37604‑M2/39‑1 (MQ=255) aaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcgcttgtgcatattctgaaaATCCACATGTATGTGTCACGCCAACATCATAACCAGTAACTAacac > 1:35479‑M2/96‑141 (MQ=255) aaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATAc > 2:301692‑M2/96‑141 (MQ=255) aaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTCTGTGTCACGCCAACCTCATAACCAGTAACTAATACa > 2:193904‑M2/95‑141 (MQ=255) aaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAt < 2:254716‑M2/48‑1 (MQ=255) tgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGcc < 1:162459‑M2/55‑1 (MQ=255) tgggccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGcc < 1:175723‑M2/55‑1 (MQ=255) gccatataccatagtgtccatgatagacatttcttggggaataggaacaatccactctccaggcacctgtgcatattcttaaaATCCACCTGTATGTGGCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttc < 2:223804‑M2/58‑1 (MQ=255) ccatataccatagactctttaatagcactttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttct > 2:21976‑M2/83‑141 (MQ=255) atataccatatactctctaagcgacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCttt < 2:21121‑M2/61‑1 (MQ=255) atataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTCACTACTACATTATCACCTTCttt > 1:78501‑M2/81‑141 (MQ=255) tagactctttaatagacatttcttgtggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTAt < 2:212311‑M2/69‑1 (MQ=255) tagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTAt > 1:20649‑M2/73‑141 (MQ=255) actctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACAAGTAACTAATACATTATCGCCTTCTTTAAACTTATCAt > 2:148496‑M2/70‑141 (MQ=255) cactttaaaagacactgctggggaaatagaaacaatccattcaccaagcacttgtccatattctgaaaATCAACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAGTATCGCCTGCTTTAAACTTATCAtt < 2:257853‑M2/73‑1 (MQ=255) tctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTc > 1:232030‑M2/68‑141 (MQ=255) tctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTCTCACGCCAACATCATAACCAGTAACTAATACATCATCGCCTCCTTTCAACTCATCATTc > 2:298987‑M2/68‑141 (MQ=255) tttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATACCCTTCTTTAAACTTATCAttcta > 2:249024‑M2/66‑139 (MQ=255) agtagacatttcgtggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACt < 2:201067‑M2/79‑1 (MQ=255) atagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTACTACCTTATCGCCTTCTTTAAACTTATCATTCGAACtt > 1:132302‑M2/62‑141 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt > 1:207131‑M2/59‑141 (MQ=255) catttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTc > 1:304210‑M2/57‑141 (MQ=255) catttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATAAATTATCCCCTTCATTAAACTTATCATTCGAACTTGATTc > 2:218346‑M2/57‑141 (MQ=255) atttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTca < 1:130980‑M2/86‑1 (MQ=255) tcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaaca > 1:15546‑M2/53‑141 (MQ=255) tggggaatagtatcaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATa > 2:8482‑M2/50‑141 (MQ=255) ataggaacaatccactctccaggcacttgtgcatattctgaaaATCCATCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCa > 1:24263‑M2/44‑141 (MQ=255) aggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCaaa > 1:230829‑M2/42‑141 (MQ=255) gaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAAt < 1:21976‑M2/102‑1 (MQ=255) gaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCACACTTGATTCCACAATACCTccaaact > 2:259090‑M2/40‑139 (MQ=255) aacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATc < 2:154067‑M2/103‑1 (MQ=255) aacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATc > 1:191498‑M2/39‑141 (MQ=255) aatccactctccaggcacttgttcatattcgtaaaATGCACCTGTATGTTTCACGCCAACATCATAACCAGTAACTAATACATTATCGCATTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑tat < 2:35479‑M2/106‑1 (MQ=255) aatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑tat > 1:67628‑M2/36‑141 (MQ=255) tccactctccaggcacttgtgcatattctgaaaATCCATCTGTATGTGTCACGCCAATATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATAc < 2:125678‑M2/108‑1 (MQ=255) ccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTCACTAATACATTATCGCCTTCTTTAAACTTACACTTCGATATTGATTCATCAATACATGCAAAATC‑TATAcc > 2:77998‑M2/33‑141 (MQ=255) actctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAg < 1:20782‑M2/111‑1 (MQ=255) actctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAg < 2:67628‑M2/111‑1 (MQ=255) ctctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAgg > 1:260739‑M2/30‑141 (MQ=255) tctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGa > 1:221433‑M2/29‑141 (MQ=255) tccaggcacttgtttatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAAt < 1:290574‑M2/115‑1 (MQ=255) tccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAAt > 1:251682‑M2/27‑141 (MQ=255) ggcacttgtgcatattctgaaaATCGACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACATATCATTCGAACTTGATTCAACAATCCCTG‑AAAGTCTTCTTCCAGGAATCATa < 2:190934‑M2/119‑1 (MQ=255) ggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATATATTAGCTCCTTCTTTAAACTTCTCATTCAAACTTGATTCAACAATACCTGCAAAATC‑TATACCATgcatcatc > 2:78455‑M2/23‑140 (MQ=255) gcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAg < 1:81723‑M2/120‑1 (MQ=255) gcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGACACTCAGGCATTATCGCCTTCTTTCAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGTAATCATAGGATAAtct > 2:52901‑M2/14‑141 (MQ=255) caattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTAATTCAACAATACCTACACAATC‑TATCCCACGCATCATAAGATAATctct > 2:71089‑M2/12‑141 (MQ=255) ttctgaaaCTCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAAt < 2:166983‑M2/133‑1 (MQ=255) ttctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAAt > 1:300221‑M2/9‑141 (MQ=255) ttctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAAt < 1:218346‑M2/133‑1 (MQ=255) tctgaaaAGCGACCAGTATGTGGCACGTCAACATAATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAAtt < 2:184186‑M2/134‑1 (MQ=255) tatgaaaATCCACCTGTATGTGTCACGCCAACGTCATAACCAGTAACTAATACATTATCGCATTCTTTAAACTTATCATTCGAACTTGATTCAACAATACTTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAAtt < 2:29698‑M2/134‑1 (MQ=255) ctgaaaATCAACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAACTC‑TATACCAGCAATCATAGAATAATCTCTAATTa > 2:39463‑M2/7‑141 (MQ=255) tgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCACGAATCATAGGATAATCACTAATTac > 2:38737‑M2/6‑141 (MQ=255) tgaaaATCCACCTGTATGTGTCAAGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCCTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAATTac < 2:66199‑M2/136‑1 (MQ=255) aaaaATCCATCTGTATGTGTCACGCTAACATCATAATCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAATTaca < 2:262235‑M2/137‑1 (MQ=255) aaaATCCATCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATATATTATCTCCTTCGAAAATCTCACAGATCGAAGTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAATTacac < 2:78501‑M2/138‑1 (MQ=255) aaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAATTACAcc > 1:276937‑M2/3‑141 (MQ=255) | ACACTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATC‑TATACCAGGAATCATAGGATAATCTCTAATTACACC > CP000731/6413‑6691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |