| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 512620 = | 48 (1.890) | 12 (0.730) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC |
11/170 | NT | 31.5% | intergenic (+688/‑6075) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 517814 | 32 (1.260) | intergenic (+5882/‑881) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
GAATGTATAAATTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAA > USA300TCH1516_ALE/517675‑517947 | gAATGTATAAATTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCaa > 1:166984/1‑141 (MQ=32) aaTTAGCTTCATATGTCTTGGTACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaat > 2:222683‑M2/1‑131 (MQ=255) aTTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGGAACAAATGGAGGCGGTg > 2:244110/1‑141 (MQ=255) ggttagTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCAGAACACAGAAGTTAAGTTCCTTAGCGTCGAGGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCAt < 1:129996/136‑1 (MQ=255) tGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTga > 1:70227/1‑141 (MQ=32) gTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTgcga > 1:8052/1‑141 (MQ=17) aCTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTCCGTTCCGCTAGAGTCGAACGTTGCCAGGCAgtttcttaatcaaattttgggtaaaaaatcaa < 2:175715‑M2/141‑33 (MQ=255) cTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTACATGCCTTCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGc > 1:292881/1‑141 (MQ=11) aggaggTCACACATGTTCCAATGACGAAGACAGAAGTTAAGCTCCTTAGCGTCGAGGGTAGTCGAAATTACGATCCGCTAGAGTAGAACGTTGACAGGCAgttttataatcaaattttggttaaaaaataaaatggacaag > 2:264798‑M2/1‑100 (MQ=255) ggTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGAAGTCGAACTTACGTTCCGCTAGAGAAGAACGTTGCAAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCACAAGGTCTCtttt > 1:32899/1‑141 (MQ=255) gTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCCAGAGCAGCACGTTGCCAGGCAgtttcttaatcaaattttggttaaaaactaaactggccaagctagc < 2:262919‑M2/141‑47 (MQ=255) gTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGCAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGGCACGTAgttttgtaagcaaactttgcttgaaaactaaaaaagacaagataaa < 2:267922‑M2/141‑47 (MQ=255) tCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaa > 1:255208‑M2/1‑94 (MQ=255) tCAAACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGAATGGGATGACACGCATTGAGAAAGAAAGATCTCattttt > 2:63403/1‑141 (MQ=11) acCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTCGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTCTg > 1:92001/1‑141 (MQ=17) ccTGGTTCCATGCCGAACACAGAAGTTAAGCGCCTGAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCTAGGTCTCTTTTTTTATGt < 2:211788/141‑1 (MQ=255) tCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTaaaa > 1:289236/1‑141 (MQ=33) aTGACGAAAAAAGAAGTTAAGATCCTTAGAGTCGATGGTAGTCGAACTTACGTTACGCTAGAATAGAACGTTGACAGGCAgttttttaataaaattttggttaaaaaataaaatggacaagataaaaaaagttattgactt > 2:263040‑M2/1‑80 (MQ=255) tGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgactta > 1:259481‑M2/1‑79 (MQ=255) cGAAGACAGAAGTTAAGCACCTTAGCGTCGATGGTAGTCGAACTTATGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATAAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCaaa < 2:59838/141‑1 (MQ=255) cGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCaaa > 2:209984/1‑141 (MQ=32) caGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATaaaa < 1:235277/141‑1 (MQ=32) aGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTATATTAAGGGCTAAACCGTCAAAATaaaaa > 2:12083/1‑141 (MQ=11) aaGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGACAAAATAAAAAGCAAaca > 1:269469/1‑141 (MQ=18) aaGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGACTAGAACGTCAAAATAAAAAGCAAaca > 1:275442/1‑141 (MQ=18) aGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtat < 1:263360‑M2/141‑81 (MQ=255) cttcttAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataa > 1:111218‑M2/1‑59 (MQ=255) ccTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGTGCCGCATTGTGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAg < 1:233479/141‑1 (MQ=18) ccTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAg < 1:91148/141‑1 (MQ=33) cTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGa > 1:210141/1‑141 (MQ=33) gCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattc < 1:230505‑M2/141‑90 (MQ=255) cGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattct > 1:280601‑M2/1‑51 (MQ=255) ggTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggt < 2:72648‑M2/141‑98 (MQ=255) ggTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggt > 1:288900‑M2/1‑44 (MQ=255) gTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggta < 1:233087‑M2/141‑99 (MQ=255) gTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGc > 1:53520/1‑141 (MQ=33) aGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGa > 1:263087/1‑141 (MQ=33) gacgaACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaatataaaaaaagttattgacttaaatgttgataaaatgtataattaagtcttgtcggtaaga > 1:122786‑M2/3‑40 (MQ=255) gTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGaa > 1:133695/1‑141 (MQ=33) cGAACTTACGTGCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGt < 2:159378/141‑1 (MQ=18) cGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGt < 1:150586/141‑1 (MQ=33) gTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGtt < 1:289087/141‑1 (MQ=33) gTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGtt > 2:68353/1‑141 (MQ=33) agagTAGAACGTTGCCAGGCAAATTATGACCGCGAGGAGCCCCAATGAGCGCCCAAGGTGTCATTATTTATGTCCTAGGCGTAGATATCAAAGGCAAACACAAAGAAAAAAAACATGGCGAAGTGAAAACGTTAGAATCTg > 2:75172/1‑141 (MQ=2) gagTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGa > 1:284075/1‑141 (MQ=33) ggTAGAACGTGGGCAGGCAAAAAATGGATGTGATGAGCAGCATTGAGACGGAGAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGAc < 2:81763/140‑1 (MQ=11) gTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTTCCGAAGTGAAAACGTTTGAATTTGAca > 2:131776/1‑140 (MQ=255) tAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGa < 2:210141/141‑1 (MQ=33) cGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgtcttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgaacattgaaaactgaatgacaa > 1:166016‑M2/1‑12 (MQ=255) cGTTGCAAGGCAgttctttaatcaaattgtggttaaaaaataaaatggaaaagataaaaaaagttatttacttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgaacattgaaaactgaatgacaa > 2:9903‑M2/1‑12 (MQ=255) gCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGaaa > 1:298208/1‑141 (MQ=33) | GAATGTATAAATTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAA > USA300TCH1516_ALE/517675‑517947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |