| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | 100% | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 46 (0.830) +TCTCCAGGCACTTGTGCATATTCTGAAA |
32/204 | NT | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
ACTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCGC > CP000731/6415‑6693 | tcattccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATc > 1:155107‑M2/139‑141 (MQ=255)tcattccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATc > 2:186656‑M2/139‑141 (MQ=255) attccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCa > 2:34660‑M2/137‑141 (MQ=255) tccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCAcc < 2:70216‑M2/7‑1 (MQ=255) tccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCAcc < 1:180450‑M2/7‑1 (MQ=255) atttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTAt < 2:112598‑M2/12‑1 (MQ=255) aaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcat > 1:128755‑M2/115‑141 (MQ=255) aattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatc > 2:237206‑M2/114‑141 (MQ=255) gtggttatgctgccgtaaaaccggctttgccatatcccatagactctttaatagacatttcttggggaataggaacaatccactcgccaggcacttttgcatattctgaaaATCCACCTGTATGTGTCTCGTCAActtcat < 2:220175‑M2/30‑1 (MQ=255) gctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTa > 2:4913‑M2/104‑141 (MQ=255) gctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTa > 2:112893‑M2/104‑141 (MQ=255) gtacatccggctgtgccatataccatagactctttactagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGGCACGCCAACATCATAACCAGTAACTAAt < 1:9036‑M2/44‑1 (MQ=255) gtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAAt < 1:238611‑M2/44‑1 (MQ=255) aaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATAc > 2:35653‑M2/96‑141 (MQ=255) aaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAt < 1:178533‑M2/48‑1 (MQ=255) aaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAt < 1:71662‑M2/48‑1 (MQ=255) aaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAt < 1:34660‑M2/48‑1 (MQ=255) accggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATATAtt > 2:5395‑M2/93‑141 (MQ=255) accggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAtt > 2:230623‑M2/93‑141 (MQ=255) cggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTAt > 1:3458‑M2/91‑141 (MQ=255) atataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCttt > 2:229624‑M2/81‑141 (MQ=255) atataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCttt > 2:163154‑M2/81‑141 (MQ=255) taccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTACTACATTATCGCCTTCTTTaaa < 2:171505‑M2/64‑1 (MQ=255) taccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTaaa > 1:179784‑M2/78‑141 (MQ=255) taccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTaaa > 1:59330‑M2/78‑141 (MQ=255) ttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTATTTGGACTTATCATTCGaa > 1:80705‑M2/65‑141 (MQ=255) taatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAAc < 2:127201‑M2/78‑1 (MQ=255) taatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAAc < 2:190295‑M2/78‑1 (MQ=255) aatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACt > 1:96578‑M2/63‑141 (MQ=255) aatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACt < 2:235431‑M2/79‑1 (MQ=255) agacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGACCTTGa > 2:179919‑M2/60‑141 (MQ=255) agacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGa < 2:186600‑M2/82‑1 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt > 1:245394‑M2/59‑141 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt > 2:41691‑M2/59‑141 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt > 2:7690‑M2/59‑141 (MQ=255) atttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTca < 2:109711‑M2/86‑1 (MQ=255) ttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaac > 1:128602‑M2/54‑141 (MQ=255) cttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaacaa > 1:171188‑M2/52‑141 (MQ=255) tggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATa > 2:29208‑M2/50‑141 (MQ=255) gggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATAcc < 1:203069‑M2/94‑1 (MQ=255) ggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCt > 1:213232‑M2/47‑141 (MQ=255) gaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTg < 1:168703‑M2/96‑1 (MQ=255) ggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCaaaa < 2:179784‑M2/101‑1 (MQ=255) ggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCaaaa < 2:59330‑M2/101‑1 (MQ=255) gaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAAt < 2:90545‑M2/102‑1 (MQ=255) gaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAAt > 2:191476‑M2/40‑141 (MQ=255) atccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCtata < 1:29208‑M2/107‑1 (MQ=255) atccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCtata < 1:193965‑M2/107‑1 (MQ=255) atccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCtata < 1:16404‑M2/107‑1 (MQ=255) tccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATAc < 2:67444‑M2/108‑1 (MQ=255) tccactctccaggcacttgtgcatattctgaaaACCCACCTGTATGTGTCACGCCAACAGCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTAACAATCGAACTAGTTTCAACAGTTCCTGCAAATTCTCTAc < 2:94355‑M2/108‑1 (MQ=255) cactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAATTCTATACCa < 1:229624‑M2/110‑1 (MQ=255) actctccaggcacttgtgtatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAg > 1:63227‑M2/31‑141 (MQ=255) actctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAg < 2:122548‑M2/111‑1 (MQ=255) gcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAg < 1:227162‑M2/120‑1 (MQ=255) ttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAACCTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATa > 1:38215‑M2/18‑141 (MQ=255) ttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATa > 2:98147‑M2/18‑141 (MQ=255) ttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATa < 1:21199‑M2/124‑1 (MQ=255) ttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATa > 2:152798‑M2/18‑141 (MQ=255) gcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAAtct > 1:54603‑M2/14‑141 (MQ=255) aATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCg > 2:253135‑M2/2‑141 (MQ=255) aATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCg > 1:388‑M2/2‑141 (MQ=255) atccacCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATATATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCGc < 1:5395/141‑1 (MQ=255) atccacCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCGc < 1:178311/141‑1 (MQ=255) atccacCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCGc < 1:230623/141‑1 (MQ=255) | ACTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCGC > CP000731/6415‑6693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |