| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2085296 = | 25 (0.830) | 7 (0.260) | 7/252 | 2.2 | 24.4% | coding (173/201 nt) | hlb_1 | Phospholipase C |
| ? | USA300TCH1516_ALE | = 2128343 | 21 (0.780) | coding (1/825 nt) | hlb_2 | Phospholipase C | |||||
CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAA > USA300TCH1516_ALE/2128204‑2128480 | cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAACATTTTAGAAAGTCTGTAATTCAGATACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAt < 1:13063‑M2/141‑2 (MQ=255)cTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAt < 1:190112‑M2/141‑2 (MQ=255) aCATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGAACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACACATTAGGGACTCCAAAACCAATAAATACTGTTGTTACAAGGTTTCTAtgt < 2:69044‑M2/141‑4 (MQ=255) cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAATGTTTCTAtgta < 1:215560‑M2/141‑5 (MQ=255) cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgta > 2:306674‑M2/1‑137 (MQ=255) cATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAACTTTAGAAAGTATGTAATTTAGGGACCCATTAGAGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgta < 2:185220‑M2/141‑5 (MQ=255) tcgTGTATTCTCATTTGTTAGAAGAAAAATTTGATGAAGAGGACAATAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAGATACTGTTGTTACAAGGTTTCTAtgtatcc > 1:275044‑M2/2‑134 (MQ=255) gtgtATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGAGACTCCAAACCCAATAAATACACTTGTTACAAGGTTTCCAtgtatccaa < 2:14842‑M2/141‑10 (MQ=255) tATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaact > 2:51247‑M2/1‑129 (MQ=255) aTTCACATGTGGTAGGAGAAAAAGTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactg > 1:45726‑M2/1‑128 (MQ=255) tttGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCaa < 1:229608/141‑1 (MQ=255) ttgattAGAAGAAAAATTTAATGATTTTGATAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCaa < 2:225812/137‑1 (MQ=255) agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATaaa > 1:76328/1‑141 (MQ=255) agaagaAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGAGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATaaa > 2:311855/1‑141 (MQ=255) gaagaaAAATTTAAGGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATCAGCTGGTCCAAACCCAATAAATACTGTTGCTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAAc < 1:270399/141‑1 (MQ=255) agaaAAATTTAATGAAGAGGAAAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataa > 2:91517‑M2/1‑112 (MQ=255) aaTGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTaa > 1:194578/1‑141 (MQ=255) gAAGAGGATAAAAAAACAACTAAAATTTTATAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTTTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCg < 2:282068/141‑1 (MQ=255) gAAGAGGACAAAAAAACAACTAAAATTGTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCg < 1:30371/141‑1 (MQ=255) aaaaagaaCAAAAAAACAACAAAAATTATAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCg < 2:160391/134‑1 (MQ=255) agGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaa > 2:190112‑M2/1‑95 (MQ=255) aaaaaaaCAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattaaaaaagt < 2:238322‑M2/141‑52 (MQ=255) aacTAAAATTTTAGAAAGTATGTAATTTAGGGACCAATTAGGGACTCCGAACCCAAGAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATAtt < 2:298181/141‑1 (MQ=255) acTAAAATTTCAGAAAGTATGTAATTTAGGGACACATAAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATCTATCCAAACTGGGGCCAATATAAACGCGCTGATTTAATCAAACAAGACTCTTATATTa > 2:127076/1‑141 (MQ=255) gTACGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGt < 1:340332/141‑1 (MQ=255) aGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcat < 1:222740‑M2/141‑88 (MQ=255) gACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaacttactaatcactcaaaaagtaaaacagcataatatcaaggtttataactttatcattat < 1:327290‑M2/141‑91 (MQ=255) gggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATa < 1:207103/141‑1 (MQ=255) gggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATa < 1:273614/141‑1 (MQ=255) gggACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATa < 1:209691/141‑1 (MQ=255) aaaCCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCa > 1:182751/1‑141 (MQ=255) aaCCCAATAAATACTGTTGTTACAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcattaatacctcatataa < 2:187662‑M2/141‑109 (MQ=255) aataaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGaa > 2:200114/1‑140 (MQ=255) aataaataCTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAACAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGAc < 1:30560/141‑1 (MQ=255) aaataCTGTTGTTACAAGTTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTTATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACaaa < 1:69044/141‑1 (MQ=255) ataCTGTTGTTACAAGGTTTCTATGTATCTAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAatt < 2:289836/141‑1 (MQ=255) aCAAGGTTTCTAtgtatccaaactggagacttttaacataaaattacttatcattcaaaaagtaaaacagcataatatcaaggtttataactttatcattatcaataatacctcatataaaataaaattttagggactttt < 1:174352‑M2/141‑130 (MQ=255) tCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGaaaaaa < 2:215560/141‑1 (MQ=255) | CTACATCCGTGTATTCTCATTTGTTAGAAGAAAAATTTAATGAAGAGGACAAAAAAACAACTAAAATTTTAGAAAGTATGTAATTTAGGGACCCATTAGGGACTCCAAACCCAATAAATACTGTTGTTACAAGGTTTCTATGTATCCAAACTGGGGGCAATATAAACGCGCTGATTTAATCGGACAATCTTCTTATATTAAAAATAATGATGTCGTAATATTCAATGAAGCATTTGATAATGGTGCATCAGACAAATTATTAAGTAATGTGAAAAAA > USA300TCH1516_ALE/2128204‑2128480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |